Typing tool
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Typing tool
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Complete norovirus genomes
| AB665364 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..5086
ORF2: 5067..6689
ORF3: 6689..7495
LOCUS AB665364 7542 bp RNA linear VRL 27-SEP-2016
DEFINITION Norovirus Hu/GII.4/Osaka/NV2210/2007/JP genes for nonstructural
polyprotein, capsid protein, minor capsid protein, partial and
complete cds.
ACCESSION AB665364
VERSION AB665364.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Osaka/NV2210/2007/JP
ORGANISM Norovirus Hu/GII.4/Osaka/NV2210/2007/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Yoda,T., Suzuki,Y., Aoyama,I., Yamazaki,K., Nakata,S. and
Takahashi,K.
TITLE No crucial amino acid changes in the predicted histo blood group
antigen-binding sites of norovirus genotype GII.4 capsid between
non-secretors and secretors origin might suggest an alternative
route of infection or existence of coincidental molecules
JOURNAL J. Med. Microbiol. 64 (12), 1544-1547 (2015)
PUBMED 26432289
REMARK DOI:10.1099/jmm.0.000178
REFERENCE 2 (bases 1 to 7542)
AUTHORS Yoda,T., Yamazaki,K. and Sakon,N.
TITLE Direct Submission
JOURNAL Submitted (17-AUG-2011) Contact:Tomoko Yoda Osaka Prefectural
Institute of Public Health, Infectious Disease; Higashinari-ku,
Nakamichi 1-3-69, Osaka, Osaka 537-0025, Japan
FEATURES Location/Qualifiers
source 1..7542
/organism="Norovirus Hu/GII.4/Osaka/NV2210/2007/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Osaka/NV2210/2007/JP"
/host="Homo sapiens"
/db_xref="taxon:1077391"
/country="Japan:Osaka"
/collection_date="2007-02"
CDS <1..5086
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BAS53735.1"
/translation="NDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARPKQPPP
REIPQGPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPEETNTA
FSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISFAKVE
LTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLRPLN
IINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPEDLVVEL
VPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA
NELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASP
DIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIA
ASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLN
CDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF
PGQPDMWKNAFSSDFSHIRLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH
ERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTMPELKQ
ALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLRCARIR
YYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNEDGCPKPKD
NEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEI
RKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFIT
STHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTL
LIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY
IYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILGPGSAP
KLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKDGPSLQQVMRDQLKPFTEPRGKPP
KPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESF
TGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIR
CARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR
AVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLK
PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP
SESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKVGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5067..6689
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="BAS53736.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6689..7495
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="BAS53737.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS
NASTATSIYLNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 taacgacgct tccgctgccg ctgttgctaa cagcaacaac gacaccgcaa aatcttcaag
61 tgacaaaatg ttttctagca tggctgtcac ttttaaacga gccctcgggg cgcggcctaa
121 acagcccccc ccgagggaaa taccacaagg acccccacga ccacctactc cagaactggt
181 caaaaagatc cctcctcccc cgcccaacgg ggaggatgaa gtagtggttt cttatagtgc
241 caaagatggc gtttccggtt tacctgagct ttccaccgtc aggcaaccgg aagaaaccaa
301 tacggccttc agtgtccctc cactcaatca gagggagaat agggatgcta aggaaccact
361 gactggaaca attctggaaa tgtgggatgg agaaatctac cattatggcc tgtatgttga
421 gcgaggtctt gtgctgggtg tgcacaaacc accagctgcc attagcttcg ccaaggtcga
481 actaacacca ctctccttgt tctggagacc tgtgtacact cctcagtacc tcatctctcc
541 agacactctc aagaaattac acggagaaac atttccctac acagccttcg acaacaattg
601 ctatgccttt tgttgctggg tcctggatct aaacgactcg tggctgagta ggagaatgat
661 ccagagaaca actggcttct tcagacccta ccaagattgg aataggaaac ccctccccac
721 tatggatgac tccaaattaa agaaggtagc taacatattc ctgtgcaccc tgtcttcgct
781 attcaccagg cccataaaag acataatagg gaagttaagg cctctcaaca tcatcaacat
841 cctggcttca tgtgattgga ctttcgcagg catagtggag tccttgatac tcttggcaga
901 gctctttgga gtcttctgga cacccccaga tgtgtctgcg atgattgccc ccttactcgg
961 tgatttcgag ttacaaggac ctgaggacct tgtagtggag ctcgtccctg tagtaatggg
1021 gggaattggt ttggtgctag gattcaccaa agagaagatt ggaaaaatgt tgtcatctgc
1081 tgcatctacc ttgagagctt gtaaagatct tggtgcatat gggctagaga tcctaaagtt
1141 agtcatgaag tggttcttcc cgaagaaaga ggaagcaaat gaactggcta tggtgagatc
1201 catcgaggat gcagtactgg accttgaggc aattgaaaac aaccatatga ccaccttgct
1261 caaagacaaa gacagcctgg caacctatat gagaaccctt gacctcgagg aagagaaagc
1321 cagaaaactc tcaaccaagt ctgcttcacc tgacatcgtg ggcacaatca acgcccttct
1381 ggcgagaatc gccgctgcac gctccctggt gcaccgagcg aaggaggagc tttccagcag
1441 accaagacct gtagtcttga tgatatcagg cagaccagga atagggaaga cccaccttgc
1501 tagggaagtg gctaagagaa tcgcagcctc cctcacagga gaccagcgtg taggcctcat
1561 cccacgcaat ggcgtcgatc actgggatgc gtacaagggg gagagggtcg tcctatggga
1621 cgactatgga atgagcaatc ccatccacga cgccctcagg ctgcaagaac tcgctgacac
1681 ttgccccctc actctaaatt gtgacaggat tgagaataaa ggaaaggtct ttgacagcga
1741 tgtcatcatt atcactacta acctggccaa cccagcacca ctggactatg tcaactttga
1801 agcgtgctcg aggcgcatcg atttcctcgt gtatgcagaa gcccccgagg tcgaaaaggc
1861 gaagcgtgac ttcccgggcc aacctgacat gtggaaaaac gcttttagtt ctgatttctc
1921 acacataaga ttggcactgg ctccacaagg tggctttgat aagaacggga acaccccaca
1981 cgggaagggc gtcatgaaga ctctcaccac tggctccctc attgcccggg catcagggct
2041 gctccatgag agattggatg agtttgaact acagggccca gctcttacca ccttcaactt
2101 tgaccgcaac aaagtgcttg ccttcaggca gcttgctgct gaaaacaaat acgggttgat
2161 ggacacaatg aaagttggga ggcagctcaa ggatgtcaaa accatgccag aacttaaaca
2221 agcactcaag aatatctcaa tcaagaagtg ccagattgtg tatagtggtt gcacctacac
2281 acttgagtct gatggcaagg gcaatgtgaa agttgacaga gttcagagca cctccgttca
2341 gaccaacaat gagctggctg gcgccctgca ccatctaagg tgcgccagaa tcaggtacta
2401 tgtcaagtgt gttcaggagg ccctgtattc tatcatccag attgctgggg ctgcatttgt
2461 caccacgcgc atcatcaagc gtgtgaacat tcaagactta tggtccaagc cacaagtgga
2521 aaacacagag gaggctacca acgaggacgg gtgcccaaag cccaaagata atgaggagtt
2581 cgtcatttcg tctgacgaca ttaaaactga gggtaagaaa gggaagaaca agactggccg
2641 tggcaagaag cacacagcct tctcaagtaa aggtctcagt gatgaagagt atgatgagta
2701 caagagaatt agagaggaaa ggaatggcaa gtactccata gaagagtacc ttcaggacag
2761 ggacaaatac tatgaggagg tggccattgc cagggcgacc gaggaagact tctgtgaaga
2821 ggaggaggcc aagatccggc aaaggatctt cagaccaaca aggaaacaac gcaaggaaga
2881 aagagcttct ctcggtttag tcacaggttc tgaaattagg aaaaggaacc cagaagactt
2941 caagcctaag gggaaactat gggctgacga tgacagaagt gtggactaca atgaaaaact
3001 cagctttgag gccccaccaa gcatctggtc aaggatagtc aactttggct caggttgggg
3061 cttctgggtc tcccccagcc tgttcataac atcaacccac gtcatacccc agggcgcaaa
3121 ggagttcttt ggagtcccca tcaaacaaat tcaggtacac aagtcaggcg aattctgtcg
3181 cttgaggttc ccaaaaccaa tcaggactga tgtgactggc atgatcttgg aagaaggtgc
3241 gcccgaaggc accgtggtca cactactcat caaaaggtct actggagaac tcatgcccct
3301 agcagctaga atggggaccc atgcaaccat gaaaattcaa gggcgcactg ttggaggtca
3361 gatgggcatg cttctgacag gatccaacgc caaaagcatg gatctaggca ccacaccagg
3421 tgattgcggc tgtccctaca tctacaagag aggaaatgac tatgtggtca ttggagtcca
3481 cacggctgcc gctcgtgggg gaaacactgt catatgtgcc acccaggggg gtgaggggga
3541 agctacactt gaaggtggtg acagtaaggg aacatactgt ggtgcaccaa tcctaggccc
3601 agggagtgcc ccaaaactta gcaccaaaac caaattctgg agatcatcca cagcaccact
3661 cccacctggc acctatgaac cagcctacct tggtggcaag gaccccagag tcaaggatgg
3721 cccctcgttg cagcaagtca tgagggacca gctgaaacca tttacagagc ctaggggtaa
3781 gccaccaaag ccaagcgtgt tagaagctgc caagaaaacc atcatcaatg tccttgaaca
3841 aacaattgac ccacctgaga agtggtcgtt cgcacaagct tgcgcgtccc ttgacaagac
3901 cacttctagc ggccatccgc accacatgcg gaaaaacgac tgctggaacg gggaatcctt
3961 cacaggcaag ctggcagacc aggcttccaa ggccaacctg atgtttgaag aagggaagaa
4021 tatgacccca gtctacacag gtgcacttaa agatgagtta gtcaaaactg acaaaattta
4081 tggtaagatc aagaagaggc ttctctgggg ctcggattta gcaaccatga tccggtgtgc
4141 tcgagcattc ggaggtctaa tggatgagct caaagcacac tgtgtcacac ttcctatcag
4201 agttggtatg aatatgaatg aggatggccc catcatcttc gagaagcatt ccaggtacag
4261 ataccactat gatgctgatt actctcggtg ggattcaaca cagcagagag ccgtgctggc
4321 agctgctcta gaaatcatgg ttaaattctc ctcagaacca catttggctc aggtggtagc
4381 agaagacctt ctttctccta gcgtggtgga tgtgggtgac ttcacaatat caatcaacga
4441 gggtcttccc tctggggtgc cctgcacctc ccaatggaac tccatcgccc actggcttct
4501 cactctctgt gcactctccg aagtcacaaa tttgtcccca gacatcatac aggctaattc
4561 tctcttctcc ttctatggtg atgatgaaat tgttagtaca gacataaaat tagacccaga
4621 gaagttgaca gcaaagctta aggaatacgg gttgaaacca acccgccctg ataaaactga
4681 aggacctctt gttatttctg aagacttaga tggtttgact ttcctgcgga gaactgtgac
4741 ccgcgaccca gctggttggt ttggaaaact ggagcagagc tcaatactca ggcaaatgta
4801 ctggactagg ggccccaacc atgaagatcc atctgaatca atgattccac actctcaaag
4861 acccatacaa ttgatgtcct tactgggaga ggccgcactc cacggcccaa cattctacag
4921 taaaatcagt aaattagtca ttgcagagct aaaagtaggt ggtatggatt tttacgtgcc
4981 caggcaagag ccaatgttca gatggatgag attctcagat ctgagcacgt gggagggcga
5041 tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc aacccatctg
5101 atgggtccgc agccaacctc gtcccagagg tcaacaatga ggttatggct ttggagcccg
5161 ttgtcggtgc cgctattgcg gcgcctgtag cgggccaaca aaatgtaatt gacccctgga
5221 ttagaaataa ttttgtacaa gcccctggtg gagagttcac agtatcccct agaaacgctc
5281 caggtgaaat actatggagc gcgcccttag gccctgatct gaatccctac ctatctcatt
5341 tggccagaat gtataatggt tatgcaggtg gttttgaagt gcaggtgatc ctcgcgggga
5401 atgcgttcac cgccggaaaa attatatttg cagcagtccc accaaatttt ccaactgaag
5461 gcttgagtcc cagccaggtc actatgttcc cccacataat agtggatgtt aggcaattgg
5521 aacctgtgtt gatcccctta cctgatgtta ggaataactt ctatcactat aatcagtcaa
5581 atgattctac cattaaattg atagcaatgc tgtatacacc acttagggct aataatgctg
5641 gggaagatgt cttcacagtc tcttgtcgag ttctcacgag gccatcccct gattttgatt
5701 ttatattttt ggtgccacct acagttgagt caagaactaa accatttact gtcccaatct
5761 taactgttga agaaatgacc aattcaagat tccccattcc tttggaaaaa ttgttcacgg
5821 gtcccagcag tgcctttgtt gttcaaccac aaaatggcag atgcacgact gatggcgtgc
5881 tcttaggcac cacccaactg tctcctgtca acatctgcac cttcagaggg gatgtcaccc
5941 acattgcagg ttctcgtaat tacacaatga atttggcttc tctaaattgg aacaattatg
6001 acccaacaga agaaattcca gcccctctag gaactccaga tttcgtggga aagatccaag
6061 gtgtgctcac tcaaaccaca aagggagatg gctcgacccg tggccataaa gctacagttt
6121 acactgggag tgcccccttt actccaaagc tgggcagtgt tcagttcagt actgatacag
6181 aaaatgattt tgaaacccac caaaacacaa aattcacccc agtcggtgtc atccaggatg
6241 gtagcaccac ccaccgaaat gaaccccaac aatgggtact cccaagttat tcaggtagaa
6301 atgtccaaaa tgtacaccta gcccctgccg tagcccccac ttttccgggt gaacaacttc
6361 ttttctttag gtccactatg cccggatgca gcgggtatcc caacatggat ttggattgcc
6421 tactccccca ggagtgggtg cagcacttct accaagaggc agctccagca caatctgatg
6481 tggctctatt gagatttgtg aatccagaca cgggtagggt cctgtttgag tgcaaactcc
6541 ataaatcagg ctatgtcaca gtggctcaca ccggccagca tgatttggtc atccccccca
6601 atggttattt taggtttgat tcctgggtta atcaattcta cacacttgcc cccatgggaa
6661 atggaacggg gcgtagacgt gctttataat ggctggagct ttctttgctg gattggcatc
6721 tgatgtcctt agctctggac ttggttccct aatcaatgct ggggctgggg ctatcaacca
6781 aaagattgat tttgaaaata acagaaaatt gcagcaagct tccttccagt ttagcagtaa
6841 tctacaacag gcttcctttc aacatgataa agagatgctc caagcacaaa ttgaggccac
6901 taaaaagttg caacaggaaa tgatgaaagt caaacaggca atgctcttag aaggtggatt
6961 ctctgaaaca gatgcagccc gtggggcaat caacgcccct atgacaaagg ctttggactg
7021 gagcggaaca aggtactggg cccctgatgc taggactaca acatacaatg caggccgttt
7081 ttccacccct caaccttcgg gggcactgcc aggaagaatc aatcccagga ctcctacccc
7141 cgctcggggc tcccccagca catcttctaa tgcttctact gctacttcta tatatttaaa
7201 tcaaactgtt tcaacgagac ttggttctac agctggttct ggcaccaatg tctcgagtct
7261 cccgtcaact gcaaggacta ggagttgggt tgaggatcaa aacagaaatt tgtcaccttt
7321 catgaggggg gctcacaaca tatcgtttgt caccccacca tctagcagat cctctagcca
7381 aggcacagtc tcaaccgtgc ctaaagaagt tttggactcc tggactggcg ctttcaacac
7441 gcgcaggcag cctctcttcg ctcacattcg taggcgaggg gagtcacggg tgtaatgtga
7501 aaagacaaaa ttgattatct ttccctttct ttagtgtctt tt
//