Human calicivirus
Typing tool

Complete norovirus genomes

AB629946  GII.2
 GII.P16

Length: 3,234 | 3 CDS 

ORF1: 1..802
ORF2: 789..2411
ORF3: 2411..3190

LOCUS       AB629946                3234 bp    RNA     linear   VRL 25-JUL-2016
DEFINITION  Norovirus Hu/Tokyo/10-4320/2011/JPN genes for polymerase, VP1, VP2,
            partial and complete cds.
ACCESSION   AB629946
VERSION     AB629946.1
KEYWORDS    .
SOURCE      Norovirus Hu/Tokyo/10-4320/2011/JPN
  ORGANISM  Norovirus Hu/Tokyo/10-4320/2011/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Prevalence of Norovirus-related community gastroenteritis in Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3234)
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2011) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjyuku, Tokyo 169-0073, Japan
FEATURES             Location/Qualifiers
     source          1..3234
                     /organism="Norovirus Hu/Tokyo/10-4320/2011/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/Tokyo/10-4320/2011/JPN"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1031406"
                     /country="Japan: Tokyo"
                     /collection_date="04-Feb-2011"
                     /note="genogroup II"
     CDS             <1..802
                     /codon_start=2
                     /product="polymerase"
                     /protein_id="BAK43283.1"
                     /translation="RWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVG
                     DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEI
                     VSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFG
                     KLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLV
                     ITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
     CDS             789..2411
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAK43284.1"
                     /translation="MASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQTN
                     IIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGGME
                     VQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPDVR
                     NNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPPTV
                     ESKTKPFTLPILTLGELSNSRFTVSIDQMYTSLNEVISVQCQNGRCTLDGELRGTTQL
                     QVSGICAFKGEVTAHVHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFGII
                     SQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFTPV
                     GLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPAID
                     CLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAPVV
                     VPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     CDS             2411..3190
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAK43285.1"
                     /translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
                     SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
                     TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
                     GSSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
                     RASDGTVSTVPQGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN      
        1 ccgctgggat tcaacacaac agagggcagt actagcagca gccttggaaa tcatggtcag
       61 gttctctgca gagccacaat tggcacagat agtcgctgag gatctgctgg cccccagtgt
      121 ggtagatgta ggagacttta aaatttcaat aaatgagggg ctcccctctg gtgtaccatg
      181 cacttctcaa tggaattcca tcgcacactg gctgctaacc ctctgtgcct tgtctgaagt
      241 caccaaactg tcccctgaca ttgtacaggc aaattccatg ttctcatttt acggtgatga
      301 cgagattgtc agcaccgata taaaattgga ccctgaaaag ttaaccacca aattgaagga
      361 gtatggcctg aaaccaactc gcccagacaa aaccgaggga cccctgatca tcagtgagga
      421 tttgaatgga ctcactttcc tccggaggac ggtgactcgt gacccagctg gctggtttgg
      481 aaaattggac caaagctcaa tattgaggca gatgtactgg actagaggac caaatcatga
      541 agaccccaat gagacaatga taccccactc tcaaagaccc atacagctca tggcactgct
      601 tggtgaggcc tcccttcacg gaccctcttt ctacagcaaa atcagtaaat tggtcataac
      661 tgaactcaaa gaaggtggga tggactttta cgtgccaaga caggaaccca tgttcaggtg
      721 gatgaggttt tctgacttga gcacgtggga gggcgatcgc aatctggctc ccaattttgt
      781 gaatgaagat ggcgtcgaat gacgccgctc catctactga tggtgcagcc ggcctcgtgc
      841 cagaaagtaa caatgaggtc atggctcttg aacccgtggc tggtgccgcc ttggcagcac
      901 cggtcaccgg tcaaacaaat attatagacc cttggattag agcaaatttt gtccaggccc
      961 ccaatggcga atttacagtc tctccccgta atgcccctgg tgaagtgcta ttaagtctag
     1021 aattgggtcc agaattaaat ccttatctgg cacatttagc aagaatgtac aacgggtatg
     1081 ccggtgggat ggaggtgcag gtcatgttgg ctgggaatgc gttcacagcc ggcaagttgg
     1141 tcttcgccgc tgtgccacct cacttcccgg ttgaaaacct tagcccacag caaattacca
     1201 tgttccctca tgtgattata gatgtaagga ccttggaacc tgttttatta ccactccctg
     1261 atgttaggaa taatttcttc cattataatc agaaagatga tcccaaaatg agaattgtgg
     1321 ctatgcttta tacccccctt agatctaatg gttcaggtga tgatgtgttc acagtttcct
     1381 gcagggtgtt gaccagaccc tcccctgatt tcgatttcac atatctggtg ccaccaacag
     1441 tggaatctaa aacaaaacca ttcaccctcc caatcctcac acttggggaa ctttccaatt
     1501 ctaggttcac agtgtccata gaccagatgt acaccagcct taatgaagtt atatcagtgc
     1561 agtgtcaaaa tgggaggtgc acattggacg gggaacttcg agggacaaca caactccaag
     1621 tcagtggcat ttgtgctttc aagggggaag tgaccgccca tgtgcatgac aatgatcacc
     1681 tatacaatgt caccatcaca aacttgaatg ggtccccttt tgacccctcc gaggacgttc
     1741 ctgcccctct gggcgtgcct gatttccagg gaagggtctt tggtattatc tcccaaagag
     1801 acaaacataa tagccctggg cataatgaac cagcaaacag gggacacgac gctgtggtcc
     1861 ctacttacac agcacagtac actccaaaat tgggtcagat tcaaattggc acatggcaga
     1921 ccgatgatct tacagtcaac caaccagtca aattcacccc agttggactc aatgacactg
     1981 aacattttaa tcagtgggtg gtccccagat acgctggtgc cctaaacctc aacacaaacc
     2041 ttgccccttc tgttgctccg gtatttccag gggagcgcct gcttttcttc agatcatacg
     2101 ttcccctcaa gggtggttat ggaaatccag ccattgattg cttattacca caagagtggg
     2161 tgcaacactt ctatcaggaa gctgccccat caatgagtga ggtggccctt gtcagataca
     2221 tcaacccgga tactggtcgg gcactgtttg aggccaagct ccacagagct ggtttcatga
     2281 cagtctcgag caacaccagt gccccggtgg ttgtgcctgc caatgggtac ttcagatttg
     2341 actcttgggt taatcaattc tattctctcg cccccatggg aactggaaat gggcgtagaa
     2401 gggttcaata atggctggag cttttatggc tggtcttgca ggggacgtgc tcagcaatgg
     2461 gctcagttca ttaattaatg caggtgctaa tgcaataaat cagagggcag aatttgattt
     2521 taatcagaaa ttacagcaaa attctttcaa tcatgataag gagatgttgc aggcccagat
     2581 tcaggcaact aagcagctgc aggcagacat gatggctata aaacaggggg tcctgaccgc
     2641 tggcggcttt tcccctgctg atgcagccag aggtgctgtg aatgcgccca tgacacaggc
     2701 gctggattgg aacggcacaa ggtattgggc accaggctct atgaggacca catcttattc
     2761 tggaaaattc acatcaatcg ccccagtgag gcaggccgac ttccagcaca cccaaagccg
     2821 gccttcgagt ggctcttctg tgtcctcctt tgccactcag tcttcaaggc caactctgac
     2881 cacaaccact gggtcctcac atggcacagc ctcatcaaat tcaactcgca gcacaggcct
     2941 ctcccaatca acggtctcta gagctacatc taggactagt gagtgggtta gagatcaaaa
     3001 tagaaatttg gaaccctaca tgcatggtgc cttacagacg gcctttgtca ccccaccttc
     3061 cagcagggcg tctgacggga cagtctcaac cgtcccacaa ggtgttttgg actcctggac
     3121 acctgcgttc aacacccgca ggcagccgct ctttgcacac ctccgtaaga ggggggagtc
     3181 acatgcctag tgaaaaggtg aaaatttgtt tagaataaat tgattctacc tttt
//