Typing tool
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Complete norovirus genomes
AB629944 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..802 ORF2: 783..2405 ORF3: 2405..3211LOCUS AB629944 3257 bp RNA linear VRL 25-JUL-2016 DEFINITION Norovirus Hu/Tokyo/10-1443/2010/JPN genes for polymerase, VP1, VP2, partial and complete cds. ACCESSION AB629944 VERSION AB629944.1 KEYWORDS . SOURCE Norovirus Hu/Tokyo/10-1443/2010/JPN ORGANISM Norovirus Hu/Tokyo/10-1443/2010/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A. TITLE Prevalence of Norovirus-related community gastroenteritis in Tokyo JOURNAL Unpublished REFERENCE 2 (bases 1 to 3257) AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A. TITLE Direct Submission JOURNAL Submitted (10-MAY-2011) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjyuku, Tokyo 169-0073, Japan FEATURES Location/Qualifiers source 1..3257 /organism="Norovirus Hu/Tokyo/10-1443/2010/JPN" /mol_type="genomic RNA" /strain="Hu/Tokyo/10-1443/2010/JPN" /isolation_source="human feces" /host="Homo sapiens" /db_xref="taxon:1031404" /country="Japan: Tokyo" /collection_date="20-Jul-2010" /note="genogroup II" CDS <1..802 /codon_start=2 /product="polymerase" /protein_id="BAK43277.1" /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVG DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEI VSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG KLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 783..2405 /codon_start=1 /product="VP1" /protein_id="BAK43278.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSSYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRHAL" CDS 2405..3211 /codon_start=1 /product="VP2" /protein_id="BAK43279.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APVTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGAPPGRANLRATVPARGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNGNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLNSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 tcgatgggat tcaacacaac agagagccgt gttggcagca gctctagaaa tcatggttaa 61 attctcccca gaaccacatt tggctcaggt agtcgcggaa gaccttcttt ctcctagcgt 121 ggtggatgtg ggcgacttca caatatcaat caacgagggt cttccctctg gggtgccctg 181 cacctcccaa tggaactcca ttgcccactg gcttctcact ctctgtgcgc tctctgaagt 241 cacaaacctg tcccctgata ccatacaggc taactccctc ttctcttttt atggtgatga 301 tgagattgtt agcacagaca taaaattgga cccagagaaa ctgacagcaa agctcagaga 361 atatgggtta aaaccaactc gccctgacaa aactgaagga ccccttgtca tctctgaaga 421 cctgaatggc ctaacgttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg 481 aaaactggag cagagttcaa tactcaggca aatgtactgg actaggggtc ccaaccatgg 541 agacccatct gaaacaatga ttccacactc ccaaagaccc atacaattga tgtccctact 601 gggggaggcc gctctccacg gcccagcatt ttacagcaaa atcagcaaat tggtcattgc 661 agagctaaaa gaaggtggca tggattttta cgtgcccaga caagagccaa tgttcagatg 721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt 781 gaatgaagat ggcgtcgagt gacgccaacc catctgatgg gtccacagcc aacctcgtcc 841 cagaggtcaa caatgaggtt atggctttgg agcccgtagt tggtgccgcc attgcggcac 901 ctgtagcggg ccaacaaaat gtaattgacc cctggattag aaacaatttt gtacaagccc 961 ctggtggaga gtttacagta tcccctagaa acgctccagg tgaaatacta tggagcgcgc 1021 ccttaggccc tgatttgaac ccctaccttt cccatttggc cagaatgtac aatggttatg 1081 caggtggttt tgaagtgcag gtaatcctcg cggggaatgc gttcaccgcc gggaaaatca 1141 tatttgcagc agtcccacca aattttccaa ctgaaggttt gagccccagc caggtcacta 1201 tgttccccca cataatagta gatgttaggc aattggaacc tgtgttgatt cccttacccg 1261 atgttaggaa taatttctac cattataatc aatcaaatga ccccactatc aaattaatag 1321 caatgttgta tacaccactc agggctaaca atgccgggga cgatgtcttc acagtttctt 1381 gtcgagttct cacgagacca tcccccgatt ttgatttcat atttttggtg ccacccacag 1441 ttgaatcaag aactaaacca ttctctgtcc cagttttaac tgttgaggag atgaccaatt 1501 caaggtttcc cattcctttg gaaaagttgt tcacgggccc tagtagtgcc tttgttgttc 1561 aaccacaaaa cggcaggtgc acgactgatg gcgtgctcct aggtactacc caactgtctc 1621 ctgtcaacat ctgcaccttc agaggggatg tcacccatat ttcaggcagt cgtaactaca 1681 caatgaattt ggcctcccaa aattggaaca gttacgatcc aacagaagaa atcccagccc 1741 ctttaggaac tccagatttc gtggggaaga ttcaaggtgt gctcacccaa accacaagga 1801 caaatggctc gacccgcggc cacaaagcta cagtgtacac tgggagcgcc gacttttctc 1861 caaaactggg tagagttcaa tttgccactg acacagacaa tgattttgaa actaaccaaa 1921 acacaaagtt caccccagtc ggtgttatcc aggatggtag tactaccccc cgaaatgaac 1981 cccaacaatg ggtgctccca agttactcag gcagaaacac tcataatgtg cacctggccc 2041 ccgctgtagc ccccactttc ccgggcgagc agctcctctt tttcagatcc actatgcctg 2101 gatgcagcgg gtaccccaac atggatttgg actgtctgct cccccaggaa tgggtgcagt 2161 atttctacca ggaggcagcc ccagcacaat ctgatgtggc tctgttaaga tttgtgaatc 2221 cagacacagg tagggttttg tttgagtgta agcttcataa atcaagctat gttacagtgg 2281 ctcacactgg ccaacatgat ttggttatcc ctcccaatgg ctattttaga tttgattcct 2341 gggtcaacca gttctacaca cttgccccca tgggaaatgg gacggggcgt agacatgcat 2401 tataatggct ggagctttct ttgctggatt ggcatctgac gtccttggct ctggacttgg 2461 ttccctaatc aatgctgggg ctggggccat caaccaaaaa gttgagtttg aaaataacag 2521 aaaattgcaa caagcttcct tccaatttag tagcaatcta caacaggctt cctttcaaca 2581 tgacaaagag atgctccaag cacaaattga agccaccaaa aagttgcaac aggaaatgat 2641 gagagttaaa caagcaatgc tcctagaggg tggattctct gagacagatg cagcccgtgg 2701 ggcaatcaac gcccccgtga caaaaacttt ggactggagc gggacaaggt actgggctcc 2761 cgatgctagg actacaacat ataatgcagg ccgcttttcc acccctcaac cctcgggggc 2821 accaccaggg agagctaatc ttagggctac tgtccccgcc cggggttcct ctagcacgtc 2881 ttctaattct tctattgcta cttctgtgta ttcaaatcaa accacctcaa cgagacttgg 2941 ttctacagct ggttctggta ccagtgtctc gagcctcccg tcaactgcaa ggactaggag 3001 ctgggttgag gatcaaaatg ggaatttgtc acctttcatg aggggggccc acaacatctc 3061 gtttgtcacc ccaccatcta gcagatcctc tagccaaggc acagtctcaa ccgtgcccaa 3121 agaagttttg aactcctgga ctggcgcttt caacacgcgc aggcagcctc tcttcgctca 3181 cattcgcaag cgaggggagt cacgggcgta atgtgaaaag acaaagttga ttatctttct 3241 tttctttagt gtctttt //