Human calicivirus
Typing tool

Complete norovirus genomes

AB629944  GII.4 New Orleans
 GII.P4 New Orleans

Length: 3,257 | 3 CDS 

ORF1: 1..802
ORF2: 783..2405
ORF3: 2405..3211

LOCUS       AB629944                3257 bp    RNA     linear   VRL 25-JUL-2016
DEFINITION  Norovirus Hu/Tokyo/10-1443/2010/JPN genes for polymerase, VP1, VP2,
            partial and complete cds.
ACCESSION   AB629944
VERSION     AB629944.1
KEYWORDS    .
SOURCE      Norovirus Hu/Tokyo/10-1443/2010/JPN
  ORGANISM  Norovirus Hu/Tokyo/10-1443/2010/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Prevalence of Norovirus-related community gastroenteritis in Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3257)
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2011) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjyuku, Tokyo 169-0073, Japan
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Norovirus Hu/Tokyo/10-1443/2010/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/Tokyo/10-1443/2010/JPN"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1031404"
                     /geo_loc_name="Japan: Tokyo"
                     /collection_date="20-Jul-2010"
                     /note="genogroup II"
     CDS             <1..802
                     /codon_start=2
                     /product="polymerase"
                     /protein_id="BAK43277.1"
                     /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVG
                     DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEI
                     VSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG
                     KLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             783..2405
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAK43278.1"
                     /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
                     STTPRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
                     CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSSYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRHAL"
     CDS             2405..3211
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAK43279.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
                     APVTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGAPPGRANLRATVPARGSSSTSS
                     NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNGNLSPFMRGAHNI
                     SFVTPPSSRSSSQGTVSTVPKEVLNSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN      
        1 tcgatgggat tcaacacaac agagagccgt gttggcagca gctctagaaa tcatggttaa
       61 attctcccca gaaccacatt tggctcaggt agtcgcggaa gaccttcttt ctcctagcgt
      121 ggtggatgtg ggcgacttca caatatcaat caacgagggt cttccctctg gggtgccctg
      181 cacctcccaa tggaactcca ttgcccactg gcttctcact ctctgtgcgc tctctgaagt
      241 cacaaacctg tcccctgata ccatacaggc taactccctc ttctcttttt atggtgatga
      301 tgagattgtt agcacagaca taaaattgga cccagagaaa ctgacagcaa agctcagaga
      361 atatgggtta aaaccaactc gccctgacaa aactgaagga ccccttgtca tctctgaaga
      421 cctgaatggc ctaacgttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg
      481 aaaactggag cagagttcaa tactcaggca aatgtactgg actaggggtc ccaaccatgg
      541 agacccatct gaaacaatga ttccacactc ccaaagaccc atacaattga tgtccctact
      601 gggggaggcc gctctccacg gcccagcatt ttacagcaaa atcagcaaat tggtcattgc
      661 agagctaaaa gaaggtggca tggattttta cgtgcccaga caagagccaa tgttcagatg
      721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt
      781 gaatgaagat ggcgtcgagt gacgccaacc catctgatgg gtccacagcc aacctcgtcc
      841 cagaggtcaa caatgaggtt atggctttgg agcccgtagt tggtgccgcc attgcggcac
      901 ctgtagcggg ccaacaaaat gtaattgacc cctggattag aaacaatttt gtacaagccc
      961 ctggtggaga gtttacagta tcccctagaa acgctccagg tgaaatacta tggagcgcgc
     1021 ccttaggccc tgatttgaac ccctaccttt cccatttggc cagaatgtac aatggttatg
     1081 caggtggttt tgaagtgcag gtaatcctcg cggggaatgc gttcaccgcc gggaaaatca
     1141 tatttgcagc agtcccacca aattttccaa ctgaaggttt gagccccagc caggtcacta
     1201 tgttccccca cataatagta gatgttaggc aattggaacc tgtgttgatt cccttacccg
     1261 atgttaggaa taatttctac cattataatc aatcaaatga ccccactatc aaattaatag
     1321 caatgttgta tacaccactc agggctaaca atgccgggga cgatgtcttc acagtttctt
     1381 gtcgagttct cacgagacca tcccccgatt ttgatttcat atttttggtg ccacccacag
     1441 ttgaatcaag aactaaacca ttctctgtcc cagttttaac tgttgaggag atgaccaatt
     1501 caaggtttcc cattcctttg gaaaagttgt tcacgggccc tagtagtgcc tttgttgttc
     1561 aaccacaaaa cggcaggtgc acgactgatg gcgtgctcct aggtactacc caactgtctc
     1621 ctgtcaacat ctgcaccttc agaggggatg tcacccatat ttcaggcagt cgtaactaca
     1681 caatgaattt ggcctcccaa aattggaaca gttacgatcc aacagaagaa atcccagccc
     1741 ctttaggaac tccagatttc gtggggaaga ttcaaggtgt gctcacccaa accacaagga
     1801 caaatggctc gacccgcggc cacaaagcta cagtgtacac tgggagcgcc gacttttctc
     1861 caaaactggg tagagttcaa tttgccactg acacagacaa tgattttgaa actaaccaaa
     1921 acacaaagtt caccccagtc ggtgttatcc aggatggtag tactaccccc cgaaatgaac
     1981 cccaacaatg ggtgctccca agttactcag gcagaaacac tcataatgtg cacctggccc
     2041 ccgctgtagc ccccactttc ccgggcgagc agctcctctt tttcagatcc actatgcctg
     2101 gatgcagcgg gtaccccaac atggatttgg actgtctgct cccccaggaa tgggtgcagt
     2161 atttctacca ggaggcagcc ccagcacaat ctgatgtggc tctgttaaga tttgtgaatc
     2221 cagacacagg tagggttttg tttgagtgta agcttcataa atcaagctat gttacagtgg
     2281 ctcacactgg ccaacatgat ttggttatcc ctcccaatgg ctattttaga tttgattcct
     2341 gggtcaacca gttctacaca cttgccccca tgggaaatgg gacggggcgt agacatgcat
     2401 tataatggct ggagctttct ttgctggatt ggcatctgac gtccttggct ctggacttgg
     2461 ttccctaatc aatgctgggg ctggggccat caaccaaaaa gttgagtttg aaaataacag
     2521 aaaattgcaa caagcttcct tccaatttag tagcaatcta caacaggctt cctttcaaca
     2581 tgacaaagag atgctccaag cacaaattga agccaccaaa aagttgcaac aggaaatgat
     2641 gagagttaaa caagcaatgc tcctagaggg tggattctct gagacagatg cagcccgtgg
     2701 ggcaatcaac gcccccgtga caaaaacttt ggactggagc gggacaaggt actgggctcc
     2761 cgatgctagg actacaacat ataatgcagg ccgcttttcc acccctcaac cctcgggggc
     2821 accaccaggg agagctaatc ttagggctac tgtccccgcc cggggttcct ctagcacgtc
     2881 ttctaattct tctattgcta cttctgtgta ttcaaatcaa accacctcaa cgagacttgg
     2941 ttctacagct ggttctggta ccagtgtctc gagcctcccg tcaactgcaa ggactaggag
     3001 ctgggttgag gatcaaaatg ggaatttgtc acctttcatg aggggggccc acaacatctc
     3061 gtttgtcacc ccaccatcta gcagatcctc tagccaaggc acagtctcaa ccgtgcccaa
     3121 agaagttttg aactcctgga ctggcgcttt caacacgcgc aggcagcctc tcttcgctca
     3181 cattcgcaag cgaggggagt cacgggcgta atgtgaaaag acaaagttga ttatctttct
     3241 tttctttagt gtctttt
//