Human calicivirus
Typing tool

Complete norovirus genomes

AB629943  GII.3
 GII.P12

Length: 3,245 | 3 CDS 

ORF1: 1..802
ORF2: 783..2429
ORF3: 2429..3193

LOCUS       AB629943                3245 bp    RNA     linear   VRL 25-JUL-2016
DEFINITION  Norovirus Hu/Tokyo/10-1105/2010/JPN genes for polymerase, VP1, VP2,
            partial and complete cds.
ACCESSION   AB629943
VERSION     AB629943.1
KEYWORDS    .
SOURCE      Norovirus Hu/Tokyo/10-1105/2010/JPN
  ORGANISM  Norovirus Hu/Tokyo/10-1105/2010/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Prevalence of Norovirus-related community gastroenteritis in Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3245)
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2011) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjyuku, Tokyo 169-0073, Japan
FEATURES             Location/Qualifiers
     source          1..3245
                     /organism="Norovirus Hu/Tokyo/10-1105/2010/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/Tokyo/10-1105/2010/JPN"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1031403"
                     /country="Japan: Tokyo"
                     /collection_date="18-Jun-2010"
                     /note="genogroup II"
     CDS             <1..802
                     /codon_start=2
                     /product="polymerase"
                     /protein_id="BAK43274.1"
                     /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVG
                     DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI
                     VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG
                     KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             783..2429
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAK43275.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLANLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVACQRNPDCTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
                     TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
     CDS             2429..3193
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAK43276.1"
                     /translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TRYWAPNATSTTSMSGGFTNKAVHRTAPNFKTNQAPKSTPSSGSSVRSLSTQITSLSS
                     HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTVSSSG
                     TVSTVPKMFWTPGQSAFNTRRQPLFAHLRRRGESNV"
ORIGIN      
        1 ccggtgggac tcaacacaac aaagagccgt gctagcagca gccttggaaa tcatggtcaa
       61 gttctcccca gagccgcacc tggcccaaaa ggttgcagaa gaccttcttt ctcccagcgt
      121 gatggacgtg ggtgatttca aaatatcaat caatgagggt ctcccctccg gagtgccctg
      181 cacatcccaa tggaattcca tcgcccactg gctcctcact ctctgtgcac tctccgaggt
      241 tacaaacctg tctcctgaca tcattcaggc caactctctc ttttctttct acggtgatga
      301 tgaaattgtg agtacagaca taaaattgga cccagaaaaa ttgacagcaa aactcaagga
      361 atacgggttg aaaccgaccc gccctgacaa gactgaaggg cctcttgtca tctccgaaga
      421 cctgaatggc ctgaccttcc tgcggaggac cgtgacccgc gacccagcag gctggtttgg
      481 aaagttggaa cagagctcaa tactcagaca aatgtactgg actaggggcc ccaaccatga
      541 agatccatct gaaacaatga taccacactc ccagaggccc atacaattga tgtctttgct
      601 gggtgaggca gcactccacg gtccagcatt ctacagcaaa atcagtaaac tggtcattgc
      661 agagttgaag gaaggtggca tggattttta cgtgccaaga caagagccaa tgttcagatg
      721 gatgagattc tcggatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt
      781 gaatgaagat ggcgtcgaat gacgccgctc catctaatga tggtgccgcc ggcctcgtcc
      841 cagagatcaa caatgaggca atggcgctag aaccagtggc gggtgcagcg atagcagcac
      901 ccctcactgg ccagcaaaat ataattgatc cctggattat gaataatttt gtgcaagcac
      961 ctggtggtga gtttacagtg tctcctagga attcccctgg tgaagtgctt ctcaatttgg
     1021 aattgggccc agaaataaat ccctatttgg cccatcttgc tagaatgtat aatggttatg
     1081 caggtgggtt tgaagtgcag gtagtcctag ctggaaatgc gtttacagca ggaaagataa
     1141 tttttgcagc tataccccct aacttcccaa ttgacaatct aagcgcagca cagatcacaa
     1201 tgtgcccaca tgtgattgtg gatgtcagac agttggaacc ggtcaacctt ccgatgcctg
     1261 acgttcgcaa caacttcttc cattacaacc aagggtctga ttcgagattg cgcttagttg
     1321 caatgctgta tacacctctt agggcaaata attctgggga tgatgttttt actgtgtctt
     1381 gtagagtgct aactaggcct agccctgact tttcatttaa cttccttgtg ccacccactg
     1441 tggagtcaaa gacaaaaccc ttcaccctcc ctattttgac tatctctgaa atgtctaatt
     1501 ctaggtttcc agtgccgatt gattctctgc acaccagccc aactgagaat attgttgtcc
     1561 agtgccaaaa tgggcgcgtc actcttgatg gtgagttgat gggcaccacc caactcttac
     1621 ctagtcaaat ctgtgctttt aggggcgtgc tcacaagatc aacaagcagg gccagtgacc
     1681 aggccgacac agcaacccct agattgttta attattattg gcacatacaa ttggctaatc
     1741 taaatgggac tccttatgat cctgcagaag acataccagg ccccctggga acaccagact
     1801 tccggggcaa agtctttggc gtggcctgcc agagaaatcc cgactgtaca actagagcac
     1861 atgaagcaaa ggtggacaca acagctggtc gcttcacccc aaaactaggc tcattggaga
     1921 tatctactga atctggtgac tttgaccaaa accaaccaac aagattcacc ccagttggca
     1981 ttggggttga ccacgaggca gacttccaac aatggtcctt acccgattat tctggtcagt
     2041 tcactcacaa catgaactta gccccagctg ttgctcccaa tttccctggt gagcagctcc
     2101 ttttcttccg ctcacagtta ccatcttctg gtgggcgatc caatgggatt ctagactgcc
     2161 tggtccccca agaatgggtt cagcacttct accaagaatc ggcccccgcc caaacccagg
     2221 tggccctggt tagatatgtc aaccctgaca ctggtagagt gttgtttgag gccaagctgc
     2281 acaaattagg cttcatgact atagctaaga atggtgactc tccaataact gtccccccaa
     2341 atggatactt taggtttgaa tcttgggtga acccatttta tacacttgcc cccatgggaa
     2401 ctgggaatgg gcgtagaagg attcaataat ggctggagct tttatagcgg gattagctgg
     2461 tgatatattc acaaatactg taggatctct agttaatgca ggggctaatg ccattaatca
     2521 aaaagttgat tttgaaaata ataaatattt gcaaaatgct tcctttaatc atgataaaga
     2581 aatgttaaat gcacaaattg aggcaacaaa gaggttacag gctgatatga ttgctatcaa
     2641 acagggggtt ttgaccgctg gcggcttttc ccccactgat gcagctcgcg gggcaattaa
     2701 tgcccccatg acaaaagtcc tagattggaa tggaacgagg tactgggcac caaatgccac
     2761 ctctacaacc tcgatgtcgg gtggcttcac aaacaaggct gtgcacagaa ccgcgccaaa
     2821 ttttaaaacg aaccaggcgc ccaaatccac acccagcagt gggtcttcag tgaggtcact
     2881 ctcaacccaa atcactagtc tgagctcaca ctcgtccggg tcgtctcgat ccagcgggtc
     2941 tacagttgtg agctcattac catcctccaa caggactagg gactgggtca atcaacaaaa
     3001 tttcaatttg gaaccacaca tgcctgggtc ccttaggaca gcttttgtca ctccaccatc
     3061 tagtacagtc tctagttcag gcactgtctc aaccgtgccc aaaatgtttt ggactcctgg
     3121 acaatctgcg tttaacacgc gcagacagcc gctattcgca caccttcgta gaagggggga
     3181 gtcaaatgtt tagtgaaaag attattttaa atttgattta aattggattt gatttggaat
     3241 ctttt
//