Typing tool
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Complete norovirus genomes
AB629942 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..802 ORF2: 783..2405 ORF3: 2405..3211LOCUS AB629942 3258 bp RNA linear VRL 25-JUL-2016 DEFINITION Norovirus Hu/Tokyo/10-20/2010/JPN genes for polymerase, VP1, VP2, partial and complete cds. ACCESSION AB629942 VERSION AB629942.1 KEYWORDS . SOURCE Norovirus Hu/Tokyo/10-20/2010/JPN ORGANISM Norovirus Hu/Tokyo/10-20/2010/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A. TITLE Prevalence of Norovirus-related community gastroenteritis in Tokyo JOURNAL Unpublished REFERENCE 2 (bases 1 to 3258) AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A. TITLE Direct Submission JOURNAL Submitted (10-MAY-2011) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjyuku, Tokyo 169-0073, Japan FEATURES Location/Qualifiers source 1..3258 /organism="Norovirus Hu/Tokyo/10-20/2010/JPN" /mol_type="genomic RNA" /strain="Hu/Tokyo/10-20/2010/JPN" /isolation_source="human feces" /host="Homo sapiens" /db_xref="taxon:1031402" /country="Japan: Tokyo" /collection_date="02-Apr-2010" /note="genogroup II" CDS <1..802 /codon_start=2 /product="polymerase" /protein_id="BAK43271.1" /translation="RWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFG KLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 783..2405 /codon_start=1 /product="VP1" /protein_id="BAK43272.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTQNDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNVPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSRYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2405..3211 /codon_start=1 /product="VP2" /protein_id="BAK43273.1" /translation="MAGAFFAGLASDVLSSGLGSLISAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQELMKVKQAMLLEGGFSETDAARGAIN APMTKVLDWSGTRYWAPDARTTTYNAGRFSTPQPPGALPGRVNPRTPTPVRGSPSISS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 tcggtgggat tcaacacaac agagagccgt gctggcagct gctctagaaa tcatggttaa 61 attctcctca gaaccacatt tggctcaggt ggtagcagaa gacctccttt ctcctagcgt 121 ggtggatgtg ggtgacttca caatatcaat caacgagggt cttccctctg gggtgccctg 181 cacctcccaa tggaactcca tcgcccactg gcttctcact ctctgtgcac tctccgaagt 241 tacaaatttg tccccagaca tcatacaggc taattctctc ttctccttct atggtgatga 301 tgaaattgtt agtacagaca taaaattaga cccagagaag ttgacagcaa agcttaagga 361 atacgggttg aaaccaactc gccctgataa aactgaagga ccccttgtta tttctgaaga 421 cttagatggt ttgactttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg 481 aaaactggag cagagctcaa tactcaggca aatgtactgg actaggggcc ccaaccatga 541 agatccatct gaatcaatga ttccacactc tcaaagaccc atacaattga tgtccttact 601 gggagaggcc gcactccacg gcccaacatt ctacagtaaa atcagcaaat tagtcattgc 661 agagctaaaa gaaggtggta tggattttta cgtgcccagg caagagccaa tgttcagatg 721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt 781 gaatgaagat ggcgtcgaat gacgccaacc catctgatgg gtccgcagcc aacctcgtcc 841 cagaggtcaa caatgaggtt atggctttgg agcccgttgt cggtgccgct attgcggcgc 901 ctgtagcggg ccaacaaaat gtaattgacc cctggattag aaataatttt gtacaagccc 961 ctggtggaga gttcacagta tcccctagaa acgctccagg tgaaatacta tggagcgcgc 1021 ccttaggccc tgatctgaat ccctacctat ctcatttggc cagaatgtat aatggttatg 1081 caggtggttt tgaagtgcag gtgatcctcg cggggaacgc gttcaccgcc ggaaaaatta 1141 tatttgcagc agtcccacca aattttccaa ctgaaggctt gagtcccagc caggtcacta 1201 tgttccccca cataatagta gatgttaggc aattggaacc tgtgttgatc cccttacctg 1261 atgttaggaa taatttctat cactataatc agtcaaatga ttctaccatt aaattgatag 1321 caatgctgta tacaccactt agggctaata atgctgggga agatgtcttt acagtctctt 1381 gtcgagttct cacgaggcca tcccctgatt ttgatttcat attcttggtg ccacctacag 1441 ttgagtcaag aactaaacca tttactgtcc caatcttaac tgttgaagaa atgaccaact 1501 caagattccc cattcctttg gagaagttgt tcacaggtcc cagcagtgcc tttgttgttc 1561 aaccacaaaa tggcagatgc acaactgatg gcgtgctctt aggcaccacc cagctgtctc 1621 ctgtcaacat ctgcaccttc agaggggatg tcacccacat tgcaggttct cgtaattaca 1681 caatgaattt ggcttctcta aattggaaca attatgaccc aacagaagaa attccagccc 1741 ctctaggaac tccagatttc gtgggaaaga tccaaggtgt gctcactcaa accacaaagg 1801 gagatggctc gacccgtggc cataaagcta cagtttacac tgggagtgcc cccttcactc 1861 caaagctggg cagtgttcaa ttcagtactg atacacaaaa tgattttgaa acccaccaaa 1921 acacaaaatt caccccagtc ggtgtcatcc aggatggtgg caccacccac cgaaatgaac 1981 ctcaacaatg ggtgctccca agttattcag gtagaaatgt ccctaatgta cacctagccc 2041 ctgctgtagc ccccactttt ccgggtgaac aacttctttt ctttaggtcc actatgcccg 2101 gatgcagcgg gtatcccaac atggatttgg actgcctact accccaggag tgggtgcagc 2161 acttctacca agaggcagct ccagcacaat ctgatgtggc tctattgaga tttgtgaatc 2221 cagacacggg tagggtcctg tttgagtgca aacttcataa atcacgctat gtcacagtgg 2281 ctcacaccgg tcagcatgat ttggtcatcc cccccaatgg ttattttagg tttgactcct 2341 gggttaatca attctacacg cttgccccca tgggaaatgg aacggggcgt agacgtgctt 2401 tataatggct ggagctttct ttgctggatt ggcatctgat gtccttagct ctggacttgg 2461 ttccctaatc agtgctgggg ctggggctat caaccaaaag attgattttg aaaataacag 2521 aaaattgcag caagcttcct tccagtttag cagtaatcta caacaggctt cctttcaaca 2581 tgacaaagag atgctccaag cacaaattga ggccactaaa aagttgcaac aggaactgat 2641 gaaagtcaaa caggcaatgc tcttagaagg tggattctct gaaacagatg cagcccgtgg 2701 ggcaatcaac gcccctatga caaaggtttt ggactggagc ggaacaaggt actgggcccc 2761 tgatgctagg actacaacat acaatgcagg ccgtttttcc acccctcaac ctccaggggc 2821 actgccagga agagtcaatc ccaggactcc cacccccgtt cggggctccc ccagcatatc 2881 ttctaatgct tctactgcta cttctatata ttcaaatcaa actgtttcaa cgagacttgg 2941 ttctacagct ggttctggca ccaatgtctc gagtctcccg tcaactgcaa ggactaggag 3001 ttgggttgag gatcaaaaca gaaatttgtc acctttcatg aggggggctc acaacatatc 3061 gttcgtcacc ccaccatcta gcagatcctc tagccaaggc acagtctcaa ccgtgcctaa 3121 agaagttttg gactcctgga ctggcgcttt caacacgcgc aggcagcctc tcttcgctca 3181 cattcgtagg cgaggggagt cacgggtgta atgtgaaaag acaaaattga ttatctctcc 3241 ttttctttag tgtctttt //