Human calicivirus
Typing tool

Complete norovirus genomes

AB629942  GII.4 Den Haag
 GII.P4 Den Haag

Length: 3,258 | 3 CDS 

ORF1: 1..802
ORF2: 783..2405
ORF3: 2405..3211

LOCUS       AB629942                3258 bp    RNA     linear   VRL 25-JUL-2016
DEFINITION  Norovirus Hu/Tokyo/10-20/2010/JPN genes for polymerase, VP1, VP2,
            partial and complete cds.
ACCESSION   AB629942
VERSION     AB629942.1
KEYWORDS    .
SOURCE      Norovirus Hu/Tokyo/10-20/2010/JPN
  ORGANISM  Norovirus Hu/Tokyo/10-20/2010/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Prevalence of Norovirus-related community gastroenteritis in Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3258)
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2011) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjyuku, Tokyo 169-0073, Japan
FEATURES             Location/Qualifiers
     source          1..3258
                     /organism="Norovirus Hu/Tokyo/10-20/2010/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/Tokyo/10-20/2010/JPN"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1031402"
                     /geo_loc_name="Japan: Tokyo"
                     /collection_date="02-Apr-2010"
                     /note="genogroup II"
     CDS             <1..802
                     /codon_start=2
                     /product="polymerase"
                     /protein_id="BAK43271.1"
                     /translation="RWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG
                     DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI
                     VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFG
                     KLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             783..2405
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAK43272.1"
                     /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTQNDFETHQNTKFTPVGVIQDG
                     GTTHRNEPQQWVLPSYSGRNVPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSRYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             2405..3211
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAK43273.1"
                     /translation="MAGAFFAGLASDVLSSGLGSLISAGAGAINQKIDFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQELMKVKQAMLLEGGFSETDAARGAIN
                     APMTKVLDWSGTRYWAPDARTTTYNAGRFSTPQPPGALPGRVNPRTPTPVRGSPSISS
                     NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
                     SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN      
        1 tcggtgggat tcaacacaac agagagccgt gctggcagct gctctagaaa tcatggttaa
       61 attctcctca gaaccacatt tggctcaggt ggtagcagaa gacctccttt ctcctagcgt
      121 ggtggatgtg ggtgacttca caatatcaat caacgagggt cttccctctg gggtgccctg
      181 cacctcccaa tggaactcca tcgcccactg gcttctcact ctctgtgcac tctccgaagt
      241 tacaaatttg tccccagaca tcatacaggc taattctctc ttctccttct atggtgatga
      301 tgaaattgtt agtacagaca taaaattaga cccagagaag ttgacagcaa agcttaagga
      361 atacgggttg aaaccaactc gccctgataa aactgaagga ccccttgtta tttctgaaga
      421 cttagatggt ttgactttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg
      481 aaaactggag cagagctcaa tactcaggca aatgtactgg actaggggcc ccaaccatga
      541 agatccatct gaatcaatga ttccacactc tcaaagaccc atacaattga tgtccttact
      601 gggagaggcc gcactccacg gcccaacatt ctacagtaaa atcagcaaat tagtcattgc
      661 agagctaaaa gaaggtggta tggattttta cgtgcccagg caagagccaa tgttcagatg
      721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt
      781 gaatgaagat ggcgtcgaat gacgccaacc catctgatgg gtccgcagcc aacctcgtcc
      841 cagaggtcaa caatgaggtt atggctttgg agcccgttgt cggtgccgct attgcggcgc
      901 ctgtagcggg ccaacaaaat gtaattgacc cctggattag aaataatttt gtacaagccc
      961 ctggtggaga gttcacagta tcccctagaa acgctccagg tgaaatacta tggagcgcgc
     1021 ccttaggccc tgatctgaat ccctacctat ctcatttggc cagaatgtat aatggttatg
     1081 caggtggttt tgaagtgcag gtgatcctcg cggggaacgc gttcaccgcc ggaaaaatta
     1141 tatttgcagc agtcccacca aattttccaa ctgaaggctt gagtcccagc caggtcacta
     1201 tgttccccca cataatagta gatgttaggc aattggaacc tgtgttgatc cccttacctg
     1261 atgttaggaa taatttctat cactataatc agtcaaatga ttctaccatt aaattgatag
     1321 caatgctgta tacaccactt agggctaata atgctgggga agatgtcttt acagtctctt
     1381 gtcgagttct cacgaggcca tcccctgatt ttgatttcat attcttggtg ccacctacag
     1441 ttgagtcaag aactaaacca tttactgtcc caatcttaac tgttgaagaa atgaccaact
     1501 caagattccc cattcctttg gagaagttgt tcacaggtcc cagcagtgcc tttgttgttc
     1561 aaccacaaaa tggcagatgc acaactgatg gcgtgctctt aggcaccacc cagctgtctc
     1621 ctgtcaacat ctgcaccttc agaggggatg tcacccacat tgcaggttct cgtaattaca
     1681 caatgaattt ggcttctcta aattggaaca attatgaccc aacagaagaa attccagccc
     1741 ctctaggaac tccagatttc gtgggaaaga tccaaggtgt gctcactcaa accacaaagg
     1801 gagatggctc gacccgtggc cataaagcta cagtttacac tgggagtgcc cccttcactc
     1861 caaagctggg cagtgttcaa ttcagtactg atacacaaaa tgattttgaa acccaccaaa
     1921 acacaaaatt caccccagtc ggtgtcatcc aggatggtgg caccacccac cgaaatgaac
     1981 ctcaacaatg ggtgctccca agttattcag gtagaaatgt ccctaatgta cacctagccc
     2041 ctgctgtagc ccccactttt ccgggtgaac aacttctttt ctttaggtcc actatgcccg
     2101 gatgcagcgg gtatcccaac atggatttgg actgcctact accccaggag tgggtgcagc
     2161 acttctacca agaggcagct ccagcacaat ctgatgtggc tctattgaga tttgtgaatc
     2221 cagacacggg tagggtcctg tttgagtgca aacttcataa atcacgctat gtcacagtgg
     2281 ctcacaccgg tcagcatgat ttggtcatcc cccccaatgg ttattttagg tttgactcct
     2341 gggttaatca attctacacg cttgccccca tgggaaatgg aacggggcgt agacgtgctt
     2401 tataatggct ggagctttct ttgctggatt ggcatctgat gtccttagct ctggacttgg
     2461 ttccctaatc agtgctgggg ctggggctat caaccaaaag attgattttg aaaataacag
     2521 aaaattgcag caagcttcct tccagtttag cagtaatcta caacaggctt cctttcaaca
     2581 tgacaaagag atgctccaag cacaaattga ggccactaaa aagttgcaac aggaactgat
     2641 gaaagtcaaa caggcaatgc tcttagaagg tggattctct gaaacagatg cagcccgtgg
     2701 ggcaatcaac gcccctatga caaaggtttt ggactggagc ggaacaaggt actgggcccc
     2761 tgatgctagg actacaacat acaatgcagg ccgtttttcc acccctcaac ctccaggggc
     2821 actgccagga agagtcaatc ccaggactcc cacccccgtt cggggctccc ccagcatatc
     2881 ttctaatgct tctactgcta cttctatata ttcaaatcaa actgtttcaa cgagacttgg
     2941 ttctacagct ggttctggca ccaatgtctc gagtctcccg tcaactgcaa ggactaggag
     3001 ttgggttgag gatcaaaaca gaaatttgtc acctttcatg aggggggctc acaacatatc
     3061 gttcgtcacc ccaccatcta gcagatcctc tagccaaggc acagtctcaa ccgtgcctaa
     3121 agaagttttg gactcctgga ctggcgcttt caacacgcgc aggcagcctc tcttcgctca
     3181 cattcgtagg cgaggggagt cacgggtgta atgtgaaaag acaaaattga ttatctctcc
     3241 ttttctttag tgtctttt
//