Human calicivirus
Typing tool

Complete norovirus genomes

AB629941  GII.2
 GII.P2

Length: 3,237 | 3 CDS 

ORF1: 1..805
ORF2: 792..2414
ORF3: 2414..3193

LOCUS       AB629941                3237 bp    RNA     linear   VRL 25-JUL-2016
DEFINITION  Norovirus Hu/Tokyo/10-14/2010/JPN genes for polymerase, VP1, VP2,
            partial and complete cds.
ACCESSION   AB629941
VERSION     AB629941.1
KEYWORDS    .
SOURCE      Norovirus Hu/Tokyo/10-14/2010/JPN
  ORGANISM  Norovirus Hu/Tokyo/10-14/2010/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Prevalence of Norovirus-related community gastroenteritis in Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3237)
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2011) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjyuku, Tokyo 169-0073, Japan
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Norovirus Hu/Tokyo/10-14/2010/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/Tokyo/10-14/2010/JPN"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1031401"
                     /country="Japan: Tokyo"
                     /collection_date="01-Apr-2010"
                     /note="genogroup II"
     CDS             <1..805
                     /codon_start=2
                     /product="polymerase"
                     /protein_id="BAK43268.1"
                     /translation="SRWDSTQQRAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDV
                     GDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDE
                     IVSTDIKLDPEKLTGKLREYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWF
                     GKLDQSSILRQLYWTKGPNHEDPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKL
                     VISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
     CDS             792..2414
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAK43269.1"
                     /translation="MASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQTN
                     IIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARLYNGYAGGME
                     VQVMLAGNAFTAGKLVFPAVPPHFPIENLSPQQITMFPHVIIDVRTLEPVLLPLPDVR
                     NNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPPTV
                     ESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTTQL
                     QVSGICAFKGEVTAHLHDNDHLYNITITNLNGSPFDPSEDIPAPLGVPDFQGRVFGII
                     SQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVSQPVKFTPV
                     GLNDIEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPAID
                     CLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAPVV
                     VPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     CDS             2414..3193
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAK43270.1"
                     /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
                     SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
                     TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFTTQSSRPTLTTTT
                     GSSHGTASSNSTRSTNLSQPTVSRAASRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
                     RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN      
        1 ttccaggtgg gattcaacac agcagagagc cgtcctggcc gcggccatgg agattatggt
       61 taaattctca gcagaaccac aactagccca aatagttgca gaggatctat tgtcgcctag
      121 tgtagttgac gtgggcgact tcaaaatttc catcaatgaa ggattaccat cgggtgtccc
      181 ttgcacctct caatggaatt caattgcaca ctggctcctc accttatgtg ccctttctga
      241 agttacagac ctctctcctg acattgtgca ggccaactcc ctcttctcct tctatggtga
      301 tgatgaaatt gtgagcacag atattaaatt agacccagaa aagctgacgg ggaagttgag
      361 agaatatggc ctcaaaccca cccgtccaga caaaactgag ggccccctga tcattagcga
      421 ggatctgaat ggcctgactt tcctgaggag aaccgtcact cgcgaccctg caggatggtt
      481 tggcaaactg gaccaaagtt ctatacttag gcaattgtat tggaccaaag gccccaatca
      541 tgaagacccc tttgagtcaa tgattccaca ctcccagaga cccatacaac tcatgtcact
      601 cttgggcgaa gcagcactgc atgaaccatc attttacagc aagatcagca agcttgtgat
      661 atctgaactg aaagaaggtg gaatggattt ttacgtgccc aggcaagaac ctatgtttag
      721 gtggatgagg ttctcagatt tgagcacgtg ggagggcgat cgcaatcttg ctcccagtct
      781 tgtgaatgaa gatggcgtcg aatgacgccg ctccatctac tgatggtgca gccggcctcg
      841 tgccagaaag taataatgag gtcatggctc ttgaacccgt ggctggtgcc gccttggcag
      901 ccccggtcac cggtcaaaca aatattatag acccttggat tagagcaaat tttgtccagg
      961 cccccaatgg tgaatttaca gtctctcccc gtaatgcccc tggtgaagtg ctattgaatc
     1021 tagagttggg tccagaatta aatccttatc tggcacattt agcaagattg tacaacgggt
     1081 atgccggtgg gatggaggtg caggtcatgt tggctgggaa cgcgttcaca gccggcaagt
     1141 tggtcttccc cgctgtgcca cctcacttcc cgattgaaaa ccttagccca cagcaaatta
     1201 ccatgtttcc tcatgtgatt atagatgtaa ggactttgga acccgtttta ttaccactcc
     1261 ctgatgttag aaataatttc ttccactata atcagaaaga tgatcccaag atgagaatcg
     1321 tggctatgct ttacaccccc cttaggtcta atggttcagg tgatgacgta ttcacggtct
     1381 cctgcagggt gttgactaga ccctcccctg attttgattt cacatacctg gtgccaccaa
     1441 cagtggagtc taaaacaaaa ccattcaccc tcccaattct cacacttggg gaactttcca
     1501 attctagatt cccagtgtcc atagaccaga tgtacaccag ccccaatgaa gtcatatcag
     1561 tgcagtgtca aaatggtagg tgcacactgg atggggagct ccaaggaacg acccaactcc
     1621 aggtcagtgg catttgtgct tttaagggag aagtaactgc ccacttgcat gacaatgatc
     1681 acctatacaa catcaccatc acaaacttga atgggtcccc ttttgatccc tccgaggaca
     1741 tccctgcccc cctgggcgta cctgactttc agggaagagt ctttggtatc atctcccaaa
     1801 gagacaagca caattcccct ggacataatg aaccagcaaa tagaggacac gacgctgtgg
     1861 tccctaccta cacagcacag tacactccaa aattgggtca gattcaaatt ggcacatggc
     1921 agaccgacga tctcacagtc agccaaccag taaaattcac cccagttgga ctcaatgata
     1981 ttgaacattt taaccaatgg gtggttccta gatatgctgg tgctctaaat cttaatacaa
     2041 atcttgcccc ttctgttgct ccagtatttc caggggagcg cctactcttt ttcagatcat
     2101 atatccccct caagggtggt tatggaaatc cagccattga ttgcctacta ccacaagagt
     2161 gggtgcaaca tttctaccag gaagcagccc cttcaatgag tgaggtggcc cttgtcagat
     2221 acatcaaccc ggatactggt cgggcactgt tcgaggccaa gctccacaga gctggtttca
     2281 tgacagtttc aagcaacacc agtgccccgg tggttgtgcc tgccaacgga tactttagat
     2341 ttgattcttg ggtgaaccaa ttctattctc tcgcccccat gggaactggg aatgggcgta
     2401 gaagggttca ataatggctg gagctttcgt agctggtctt gcaggggacg tgctcagcaa
     2461 tgggctcagt tcattaatta atgcaggtgc taatgcaata aatcagaggg cagaatttga
     2521 ttttaatcag agattacagc aaaattcttt caatcatgac aaggagatgt tgcaggctca
     2581 gattcaggca actaagcagc tgcaggcaga catgatggct ataaagcagg gggtcttgac
     2641 cgctggcggc ttttcccctg ctgacgcagc cagaggtgct gtgaatgcgc ccatgacaca
     2701 ggcgctggat tggaatggca caaggtattg ggcaccaggc tccatgagga ccacatctta
     2761 ctccggaaga ttcacatcaa ccgccccagt aaggcaggcc gatttccaac acacccaaag
     2821 ccggccttcg agtggctctt ctgtgtcttc ctttactact cagtcttcaa ggccaactct
     2881 gacaacaacc actggatcct cacatggcac agcctcatca aattcgactc gcagcacaaa
     2941 cctctcccaa ccaacggtct ctagggctgc atctagaact ggtgagtggg ttagggatca
     3001 aaatagaaat ttggaaccct atatgcatgg tgccctacag acagcttttg tcaccccgcc
     3061 ttccagcagg gcgtctgacg ggacggtctc aaccgtccca aaaggtgttt tggactcctg
     3121 gacacctgca ttcaacaccc gcaggcagcc gctttttgca cacctccgta agagggggga
     3181 gtcacaagct tagtgaaaag gtgaaaattt atctaaaatg aattgatctt acctttt
//