Typing tool
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Typing tool
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Complete norovirus genomes
| AB541357 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..5103
ORF2: 5084..6706
ORF3: 6706..7512
LOCUS AB541357 7512 bp RNA linear VRL 03-AUG-2010
DEFINITION Norovirus Hu/GII-4/Toyama3/2007/JP genomic RNA, complete genome.
ACCESSION AB541357
VERSION AB541357.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Toyama3/2007/JP
ORGANISM Norovirus Hu/GII-4/Toyama3/2007/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7512)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus Hu/GII-4/Toyama3/2007/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Toyama3/2007/JP"
/isolation_source="stool"
/db_xref="taxon:707540"
/country="Japan:Toyama"
CDS 1..5103
/note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ14001.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP
KQPPSREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYASFKYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIG
KLRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPE
DLVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLARE
VAKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADT
CPLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERLDEFELQGPALITFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKT
MPELKQALKNVSIKKCQIVYSGCTYTLESDGKGNVKVDRIQSTSIQTNNELAGALHHL
RCARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDG
CPKPKDNEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGL
VTGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVS
PSLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPE
GTVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPIL
GPGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKDGPSLQQVMRDQLKPFTE
PRGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACVSLDKTTSSGHPHHMRKNDC
WNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSD
LATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRG
PNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQ
EPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5084..6706
/codon_start=1
/product="VP1"
/protein_id="BAJ14002.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6706..7512
/codon_start=1
/product="VP2"
/protein_id="BAJ14003.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPPGALPGRVNPRTPTPARGSPSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacaa aatgttttct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaagcagcc cccctcgagg gaaataccac aaagacctcc acgaccacct
181 actccagaac tggtcaaaaa gatccctccc cccccgccca acggagagga tgaagtagtg
241 gtttcttata gtgccaaaga tggcgtttcc ggtttacctg agctttccac cgtcaggcaa
301 ccggaagaaa ccaatacggc cttcagtgtc cctccactca atcagaggga gaatagggat
361 gctaaggaac cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg ttgagcgagg tcttgtgctg ggtgtgcaca aaccaccagc tgccattagc
481 ctcgccaagg tcgaactaac accactctcc ttgttctgga gacctgtgta cgcttccttc
541 aagtacctca tctctccaga cactctcaag aaattacacg gagaaacatt tccctacaca
601 gccttcgaca acaattgcta tgccttttgt tgctgggtct tggatctaaa cgactcgtgg
661 ctgagtagga gaatgatcca gagaacaact ggcttcttca gaccctacca agattggaat
721 aggaaacccc tccccactat ggatgattcc aaattaaaga aggtagctaa catattcctg
781 tgcaccctgt cttcgctatt caccaggccc ataaaagaca taatagggaa gttaaggcct
841 ctcaacatca tcaacatcct ggcttcatgt gattggactt tcgcaggcat agtggagtcc
901 ttgatactct tggcagagct ctttggagtc ttctggacac ccccagatgt gtctgcgatg
961 attgccccct tactcggtga tttcgagttg caaggacctg aggaccttgt agtggagctc
1021 gtccctgtag taatgggggg aattggtttg gtgctaggat tcaccaaaga gaaaattgga
1081 aaaatgttgt catctgctgc atccaccctg agagcttgta aagatcttgg tgcatatggg
1141 ctagagatcc taaagttagt catgaagtgg ttcttcccga agaaagagga agcaaatgaa
1201 ctggctatgg tgagatccat cgaggatgca gtactggacc ttgaggcaat cgaaaacaac
1261 catatgacca ccttgctcaa agacaaagac agcctggcaa cctatatgag aacccttgac
1321 ctcgaggaag agaaagccag aaaactctca accaagtctg cttcacctga catcgtgggc
1381 acaatcaacg cccttctggc gagaatcgcc gctgcacgct ccctggtgca ccgagcgaag
1441 gaggagcttt ccagcagacc aagacctgta gtcttgatga tatcaggcag accaggaata
1501 gggaagaccc accttgctag ggaagtggct aagagaatcg cagcctccct cacaggagac
1561 cagcgtgtag gcctcatccc acgcaatggc gtcgatcact gggatgcgta caagggggag
1621 agggtcgtcc tatgggatga ctatggaatg agcaatccca tccacgacgc cctcaggctg
1681 caagaactcg ctgacacttg ccccctcact ctaaattgtg acaggattga gaataaagga
1741 aaggtctttg acagcgatgt catcattatc actactaacc tggccaaccc agcaccactg
1801 gactatgtca actttgaagc gtgctcgagg cgcatcgatt tcctcgtgta tgcagaagcc
1861 cccgaggtcg aaaaggcgaa acgtgacttc ccgggccaac ctgacatgtg gaaaaacgct
1921 tttagttctg atttctcaca cataaaattg gcactggctc cacaaggtgg ctttgataag
1981 aacgggaaca ccccacacgg gaagggcgtc atgaagactc tcaccactgg ctccctcatt
2041 gcccgggcat cagggctgct ccatgagaga ttggatgagt ttgaactaca gggcccagct
2101 cttatcacct tcaactttga ccgcaacaaa gtgcttgcct tcaggcagct tgctgctgaa
2161 aacaaatacg ggttgatgga cacgatgaaa gttgggaggc agctcaagga tgtcaaaacc
2221 atgccagaac ttaagcaagc actcaagaat gtctcaatca agaagtgcca gattgtgtat
2281 agtggctgca cctacacact tgagtctgat ggcaagggca atgtgaaagt tgacagaatt
2341 cagagcacct ccattcagac caacaatgag ctggctggcg ccctgcacca tctaaggtgc
2401 gccagaatca ggtactatgt caagtgtgtt caggaggccc tgtattctat catccagatt
2461 gctggggctg catttgtcac cacgcgcatc atcaagcgtg tgaacattca agacttatgg
2521 tccaagccac aagtggaaaa cacagaggag gctaccaaca aggacgggtg cccaaaaccc
2581 aaagataatg aggagttcgt catttcatct gacgacatta aaactgaggg taagaaaggg
2641 aaaaacaaga ctggccgtgg caagaagcac acagccttct caagtaaagg tctcagtgat
2701 gaagagtatg atgagtacaa gagaattaga gaggaaagga atggcaagta ctccatagaa
2761 gagtaccttc aggacaggga cagatactat gaggaggtgg ccattgccag ggcgaccgag
2821 gaagacttct gtgaagagga ggaggccaag atccggcaaa ggatcttcag accaacaagg
2881 aaacaacgta aggaagaaag agcttctctc ggtttagtca caggttccga aattagaaaa
2941 aggaacccag aagacttcaa gcctaagggg aaactatggg ctgacgatga cagaagtgtg
3001 gactacaatg aaaaactcag ctttgaggcc ccaccaagca tctggtcaag gatagtcaac
3061 tttggctcag gctggggctt ctgggtctcc cccagcctgt tcataacatc aacccacgtc
3121 ataccccagg gcgcaaagga gttctttgga gtccccatca aacaaattca ggtacacaag
3181 tcaggcgaat tctgtcgctt gaggttccca aaaccaatca ggactgatgt gactggcatg
3241 atcttggaag aaggtgcgcc cgaaggtacc gtggtcacac tactcatcaa aaggtctact
3301 ggagaactca tgcccctagc agctagaatg gggacccatg caaccatgaa aattcaaggg
3361 cgcactgttg gaggtcagat gggcatgctt ctgacaggat ccaacgccaa aagcatggat
3421 ctgggcacca caccaggtga ttgcggctgt ccctacatct acaagagagg aaatgactat
3481 gtggtcattg gagtccacac ggctgccgct cgtgggggaa acactgtcat atgtgccacc
3541 caggggggtg agggggaagc tacacttgaa ggtggtgaca gtaagggaac atactgtggt
3601 gcaccaatcc taggcccagg gagtgcccca aaacttagca ccaaaaccaa attctggaga
3661 tcatccacag caccactccc acctggcacc tatgaaccag cctaccttgg tggcaaggac
3721 cccagagtca aggatggccc ctcgttgcag caagtcatga gggaccagct gaaaccattt
3781 acagagccta ggggtaagcc accaaagcca agcgtgttag aagctgccaa gaaaaccatc
3841 atcaatgtcc ttgaacaaac aattgaccca cctgagaagt ggtcgttcgc acaagcttgc
3901 gtgtcccttg acaagaccac ttctagcggc catccgcacc acatgcggaa aaacgactgc
3961 tggaacgggg aatccttcac aggcaagctg gcagaccagg cttccaaggc caacctgatg
4021 tttgaagaag ggaagaacat gaccccagtc tacacaggtg cacttaagga tgaattagtc
4081 aaaactgaca aaatttatgg taagatcaag aagaggcttc tctggggctc ggatttagca
4141 accatgatcc ggtgtgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt
4201 gtcacacttc ctatcagagt tggtatgaat atgaatgagg atggccccat catcttcgag
4261 aagcactcca ggtacagata ccactatgat gctgattact ctcggtggga ttcaacacaa
4321 cagagagccg tgctggcagc tgctctagaa atcatggtta aattctcctc agaaccacat
4381 ttggctcagg tagtagcaga agaccttctt tctcctagcg tggtggatgt gggtgacttc
4441 acaatatcaa tcaacgaggg tcttccctct ggggtgccct gcacctctca atggaactcc
4501 atcgcccact ggcttctcac tctctgtgca ctctccgaag ttacaaattt gtccccagac
4561 atcatacagg ctaattctct cttctccttc tatggtgatg atgaaattgt tagtacagat
4621 ataaaattag acccagagaa gttgacagca aagcttaagg aatacgggtt gaaaccaacc
4681 cgccctgata aaactgaagg acctcttgtt atttctgaag acttagatgg tttgactttc
4741 ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaactgga gcagagctca
4801 atactcaggc aaatgtactg gactaggggc cccaaccatg aagatccatc tgaatcaatg
4861 attccacact ctcaaagacc catacaattg atgtccttac tgggagaggc cgcactccac
4921 ggcccaacat tctacagtaa aatcagcaaa ttagtcattg cagagctaaa agaaggtggt
4981 atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg
5041 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa
5101 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt
5161 tatggctttg gagcccgttg tcggtgccgc tattgcggcg cctgtagcgg gccaacaaaa
5221 tgtaattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agttcacagt
5281 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttaggcc ctgatctgaa
5341 tccctaccta tctcatttgg ccagaatgta taatggttat gcaggtggtt ttgaagtgca
5401 ggtgatcctc gcggggaacg cgttcaccgc cggaaaaatt atatttgcag cagtcccacc
5461 aaattttcca actgaaggct tgagtcccag ccaggtcact atgttccccc acataatagt
5521 ggatgttagg caattggaac ctgtgttgat ccccttacct gatgttagga ataacttcta
5581 tcactataat cagtcaaatg attctaccat taaattgata gcaatgctgt atacaccact
5641 tagggctaat aatgctgggg aagatgtctt cacagtctct tgtcgagttc tcacgaggcc
5701 atcccctgat tttgatttta tatttttggt gccacctaca gttgagtcaa gaactaaacc
5761 atttactgtc ccaatcttaa ctgttgaaga aatgaccaat tcaagattcc ccattccttt
5821 ggaaaaattg ttcacgggtc ccagcagtgc ctttgttgtt caaccacaaa atggcagatg
5881 cacgactgat ggcgtgctct taggcaccac ccaactgtct cctgtcaaca tctgcacctt
5941 cagaggggat gtcacccaca ttgcaggttc tcgcaactac acaatgaatt tggcttctct
6001 aaattggaac aattatgacc caacagaaga aattccagcc cctctaggaa ctccagattt
6061 cgtgggaaag atccaaggtg tgctcactca aaccacaaag ggagatggct cgacccgtgg
6121 ccataaagct acagtttaca ctgggagtgc cccctttact ccaaagctgg gcagtgttca
6181 attcagcact gatacagaaa atgattttga aactcaccaa aacacaaaat tcaccccagt
6241 cggtgtcatc caggatggtg gcaccaccca ccgaaatgaa ccccaacaat gggtgctccc
6301 aagttattca ggtagaaatg tccagaatgt acacctagcc cctgctgtag cccccacttt
6361 tccgggtgaa caacttcttt tctttaggtc cactatgccc ggatgcagcg ggtatcccaa
6421 catggatctg gattgcctac tcccccagga gtgggtgcag catttctacc aagaggcagc
6481 tccagcacaa tctgatgtgg ctctattgag attcgtgaat ccagacacgg gtagggtcct
6541 gtttgagtgc aaacttcata aatcaggcta tgtcacagtg gctcacaccg gccagcatga
6601 tttggttatc ccccccaatg gctattttag gtttgattcc tgggttaatc aattctacac
6661 acttgccccc atgggaaatg gaacggggcg tagacgtgct ttataatggc tggagctttc
6721 tttgctggat tggcatctga tgtccttagc tctggacttg gttccctaat caatgctggg
6781 gctggggcta tcaaccaaaa gattgatttt gaaaataaca gaaaattgca gcaagcttcc
6841 ttccagttta gcagtaatct acaacaggct tcctttcaac atgataaaga gatgctccaa
6901 gcacaaattg aggccactaa aaagttgcaa caggaaatga tgaaagtcaa acaggcaatg
6961 ctcttagaag gtggattctc tgaaacagat gcagcccgtg gggcaatcaa cgcccctatg
7021 acaaaggctt tggactggag cggaacaagg tactgggccc ctgatgctag gactacaaca
7081 tacaatgcag gccgtttttc cacccctcaa cctccggggg cactgccagg aagagtcaat
7141 cccaggactc ccacccccgc tcggggctcc cccagcacat cttctaatgc ttctactgct
7201 acttctatct attcaaatca aactgtttca acgaggcttg gctctacagc tggttctggt
7261 accaatgtct cgagtctccc gtcaactgca aggactagga gttgggttga ggatcaaaac
7321 agaaatttgt cacctttcat gaggggggct cacaacatat cgtttgtcac tccgccatct
7381 agcagatcct ctagccaagg cacagtctca accgtgccta aagaagtttt ggactcctgg
7441 actggcgctt tcaacacgcg caggcagcct ctcttcgctc acattcgtag gcgaggggag
7501 tcacgggtgt aa
//