Typing tool
|
Complete norovirus genomes
AB541323 | GII.4 Osaka | ||
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GII.P31 |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB541323 7509 bp RNA linear VRL 03-AUG-2010 DEFINITION Norovirus Hu/GII-4/Osaka3/2007/JP genomic RNA, complete genome. ACCESSION AB541323 VERSION AB541323.1 KEYWORDS . SOURCE Norovirus Hu/GII-4/Osaka3/2007/JP ORGANISM Norovirus Hu/GII-4/Osaka3/2007/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T., Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H. CONSRTM Norovirus Surveillance Group of Japan TITLE Genome Recombination for Independent and Concurrent Evolution of Non-structural and Capsid Proteins of Norovirus GII/4 in Humans JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Motomura,K. and Sato,H. TITLE Direct Submission JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan COMMENT These sequences were determined at our laboratory. FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII-4/Osaka3/2007/JP" /mol_type="genomic RNA" /strain="Hu/GII-4/Osaka3/2007/JP" /isolation_source="stool" /db_xref="taxon:707506" /country="Japan:Osaka" CDS 1..5100 /note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAJ13899.1" /translation="MKMASNDASAAAAANSNNDIAKSSSDGVLSNMAVTFKRALGARP KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEEELVVSYSAKDGVSGLPELTTVKQPE ETNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LKPLNILNILATCDWTFAGIVESLILMAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPTLTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLRDVKTM PDLKQALKNVSIKKCQIVYGGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRITKRMNIQNLWSKPQVEDTEEAASKDGC SRPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGTKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTGKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAJ13900.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRSDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAJ13901.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSISS NASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgctg ccaacagcaa caacgacatc 61 gcaaaatctt caagtgacgg tgtgctatct aacatggctg tcacttttaa acgagccctc 121 ggggcgcggc ctaaacagcc gcccccgaag gaaataccac ccagaccccc acgaccaccc 181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga agaactagtg 241 gtttcctaca gcgccaaaga tggcgtttcc ggcctgcctg agctcaccac tgtcaaacaa 301 ccggaagaaa ccaacacggc gttcagtgtt cccccactca accagaggga gaatagggac 361 gccaaggaac cactaactgg aacaattatt gagatgtggg atggagaaat ataccactac 421 ggcctgtatg tggaacgagg tcttatactt ggtgtgcaca agccaccggc agccatcagc 481 cttgccaagg tcgagctaac accactctct ttgttctgga gacctgtata caccccccag 541 tatctcatct ctccagacac tcttaggaga ctgcatggag agtcattccc ctacactgca 601 tttgacaaca attgctacgc cttctgttgt tgggtattag acctaaacga ctcatggcta 661 agcaggagaa tgattcagag gacaacaggt ttcttcaggc cataccagga ttggaacagg 721 aaaccccttc ccactatgga tgattccaaa ttaaagaagg tggctaacat attcttgtgc 781 actttgtctt cactattcac caggcccatt aaggacataa tagggaagtt gaaacctctt 841 aacattctca acattctggc tacgtgcgat tggaccttcg caggcatagt ggagtccttg 901 atactcatgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc 961 gcccctttac taggtgatta cgagctgcaa ggacctgagg accttgcagt agaactagtc 1021 ccaatagtga tggggggaat aggtttggtg ctaggattta ccaaagagaa aattggaaag 1081 atgttgtcat ctgctgcatc cactttgaga gcctgtaaag accttggtgc atacggactg 1141 gaaattttga aattggtcat gaaatggttc tttccaaaga aagaggaagc aaacgaattg 1201 gctatggtga ggtccatcga ggatgcggtg ctggacctcg aggcaattga aaacaatcac 1261 atgaccaccc tgctcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt 1321 gaggaggaga aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca 1381 atcaactctc ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa 1441 gaactctcca gcaggccgag acctgttgtt gtgatgatat cgggaaaacc agggataggg 1501 aaaactcacc ttgccaggga gctggccaag aagatcgcag cctccctcac aggggaccag 1561 cgcgtgggtc tcatcccgcg caatggtgtc gaccattggg acgcgtacaa gggagaaagg 1621 gttgtcctgt gggacgacta tggaatgagt aaccccatcc atgatgccct caggttgcag 1681 gaacttgctg acacttgccc cctcacgcta aattgtgaca ggattgagaa caaagggaaa 1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat 1801 tatgtcaact ttgaagcgtg ctcgaggcgc attgacttcc tcgtgtacgc agaagctcct 1861 gaggtggaaa aagcaaagcg cgacttccca ggccaacctg acatgtggaa gaacgctttc 1921 agtcctgact tctcgcacat aaaactgtca ttggctccac agggtggttt tgataagaac 1981 ggcaacaccc cacatggaaa aggcgtcatg aagaccctca ctactggttc cctcatcgcc 2041 cgagcatcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccaactctc 2101 accactttca actttgaccg caacaagatc cttgctttca gacagcttgc tgctgaaaac 2161 aagtatgggc tcatggacac aatgagagtt ggaaaacagc tcagggatgt caagaccatg 2221 ccagacctca aacaagcact caagaatgtc tcgatcaaaa agtgccagat agtgtacggt 2281 ggtagcacct acacacttga ggccgatggc aagggcagtg tgaaagttga caaagtgcaa 2341 agtgccactg tgcaaaccaa caacgaacta gccggtgccc tacaccacct aaggtgcgcc 2401 agaattagat actatgtcaa gtgtgtccag gaggcactgt actccattat ccaaattgct 2461 ggggctgcat ttgtcaccac gcgcattact aagcgcatga acatacagaa cctctggtcc 2521 aagccacagg tggaggacac agaagaggcg gccagcaaag atggttgctc aagacccaaa 2581 gatgatgaag agtttgtcgt ttcatccgac gacatcaaaa ctgagggcaa gaaagggaaa 2641 aacaagactg gccgtggtaa gaagcacaca gccttctcaa gcaaagggct cagtgatgag 2701 gagtatgatg agtacaagag aatcagagaa gagaggaatg gcaagtactc catagaagag 2761 taccttcagg acagagacaa gtactatgag gaggtggcca ttgccagggc aaccgaagag 2821 gacttctgtg aagaagaaga ggccaaaatc cggcagagaa ttttcagacc aacaaggaaa 2881 caacgcaaag aagagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga 2941 aacccagaag acttcaaacc caagggaaaa ctgtgggccg acgatgacag aagtgttgac 3001 tacaatgaga aactcaactt tgaggcccca ccaagcatct ggtcgcggat agtcaacttt 3061 ggttcaggtt ggggcttctg ggtctccccc agtctgttta taacatcaac acatgtcata 3121 ccccagggta caaaagagtt cttcggagtc cccatcaaac aaatccagat acacaaatca 3181 ggtgaattct gccggttaag attcccaaaa ccaatcagaa ctgatgtgac gggcatgatt 3241 ctagaagaag gtgcgcccga aggaaccgtg gccacactac tcatcaagag accaactggg 3301 gaactcatgc ctctggcagc tagaatggga acccatgcaa ccatgaagat tcaagggcgc 3361 acagttggag gacaaatggg catgctcctg acaggatcca acgccaagag tatggaccta 3421 ggcacaacac cgggtgactg cggctgtccc tacatctaca agagggggaa tgactacgtg 3481 gtcataggag tccacacggc cgctgcccgt ggaggaaaca ctgtcatatg tgccacccag 3541 gggagtgaag gggaagccac acttgaaggt ggtgacaata aaggaacata ctgtggtgca 3601 ccaatcttgg gcccagggag tgccccaaaa ctcagtacta agactaagtt ttggagatca 3661 tccacaacac cactcccacc tggcacctac gaaccagcct acctcggtgg caaggacccc 3721 agagtcaaag gtggcccttc attgcaacaa gttatgaggg accagctaaa accattcaca 3781 gaacccagag gtaaaccacc aagaccaagt gtgttggaag ctgccaagaa aaccatcatc 3841 aatgttcttg agcaaacaat tgacccaccc caaaaatggt cattcgcgca agcttgcgca 3901 tctcttgaca aaaccacttc cagcggccat ccgcaccata tgcggaagaa tgactgttgg 3961 aacggggagt cattcacagg aaaattggca gatcaggcct ccaaggccaa tctaatgttt 4021 gaagagggga agaacatgac tccagtctac acaggtgcac ttaaggatga actggtaaag 4081 actgacaaaa tttatggtaa gatcaagaag aggcttctgt ggggctcaga cctggcgact 4141 atgatacggt gcgcccgagc ttttggaggc cttatggatg aactcaaggc acattgtgtc 4201 accctaccta tcagagttgg tatgaacatg aatgaggatg gccccatcat ctttgagaaa 4261 cactccagat ataaatatca ttatgatgct gattactccc ggtgggactc aacacaacaa 4321 agggatgtgc tagcagcagc cctagaaatc atggttaaat tctctccaga accacacctg 4381 gctcaaatag ttgcagaaga cctactttcc cctagtgtaa tggatgtggg tgactttcaa 4441 atatcaataa gtgagggact cccctctggg gtgccttgca cctcccaatg gaattccatc 4501 gcccattggc tcctcactct ttgtgcactc tctgaagtca cggacctgtc ccctgacatc 4561 atccaggcca attccctttt ctccttctat ggtgatgatg agattgtgag tacagacata 4621 aagttggatc cagagaaact gacgggaaaa ctcaaggagt acgggctgaa accaacccgc 4681 cccgacaaaa ctgaaggacc cctcgttatc tctgaagatc tggatggcct gacattcctg 4741 cggaggactg tgacccgtga cccagctggt tggtttggaa aattggaaca aagctcaatt 4801 ctcaggcaaa tgtactggac caggggcccc aaccatgaag atccatctga aacaatgata 4861 ccacactccc aaagacccat acaattgatg tctctgctgg gcgaggctgc actccacggc 4921 ccggcattct atagtaaaat tagtaagtta gtcattgcag agttgaagga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggtaat 5161 ggctttggag cccgttgtag gtgccgctat tgcggcgcct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt ttacagtgtc 5281 ccccagaaat gctccaggtg agatactatg gagtgcgccc ttgggccctg atttgaaccc 5341 ttacctttct catctggcca gaatgtataa tggttatgca ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccacctaa 5461 ctttccaact gaaggcttga gccctagcca ggttactatg ttcccccata taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacctgat gttaggaata acttctatca 5581 ctacaaccag tcaaatgacc ctaccattaa attgatagca atgttgtaca caccacttag 5641 ggccaataat gctggggatg atgtcttcac agtctcttgt cgagtcctca cgagaccatc 5701 ccctgacttt gacttcatat ttctggtacc accaacagtt gaatcaagaa ccaaaccatt 5761 taccgttcca atcttaactg ttgaggaaat gaccaattca agattcccca ttcctttgga 5821 aaggttgtac acgggtccca gcagtgcttt tgttgtccag ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcttag gtaccaccca gctgtctgct gtcaacatct gcacctttag 5941 aggggatgtc actcacattg caggctctcg caattataca atgaatttgg cctctcaaaa 6001 ttggaacaac tatgatccaa cagaagaaat cccagccccc ctgggcaccc cagatttcgt 6061 gggaaagatc caaggcatgc tcacccaaac cacaagaagt gatggctcga cccgcggcca 6121 caaggccaca gtgctcactg ggagtgccga cttcgcccca aaattgggca gagttcaatt 6181 cgccactgac acagacaacg atttcgaatc tggccaaaac acgaaattca ccccagttgg 6241 cgtcatccag gatggctcca ctacccaccg aaatgaacct caacaatggg tactcccaaa 6301 ttactcaggt agaactggtc ataatgtgca tctagcccct gctgttgccc ccacttaccc 6361 gggtgagcaa ctccttttct tcaggtccac tatgcccgga tgtagcgggt accccaacat 6421 ggatctagat tgcttgctcc cccaggagtg ggtgcagcac ttctaccaag aagcagctcc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttctctt 6541 tgagtgcaag ctccataaat caggatatgt cacagtggct cacactggtc agcatgattt 6601 ggttattccc cccaatggtt attttagatt tgattcctgg gttaatcaat tctacacact 6661 tgcccccatg ggaaatggga cggggcgtag acgtgctgta taatggctgg agctttcttt 6721 gctggattgg catctgatgt ccttggctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggctatca accaaaagat tgattttgaa aataacagaa aactgcagca agcttctttc 6841 cagtttagca gcaatctgca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccactaaaaa gttgcaacag gaaatgatga aagtcaaaca ggcaatgctc 6961 ttagaaggtg gattctctga aacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaggctttgg actggagcgg aacaaggtac tgggcccctg atgctaggac tacaacatac 7081 aatgcaggcc gcttctccac ccctcaacct tcgggggcat tgtcaggaag aatcaatccc 7141 aggactccca cccccgctcg gggttcctct agcatatctt ctaatgcttc tactgctact 7201 tctgtatatt caaatcaaac tgtttcaacg agacttggtt ctacagctgg ttctggcacc 7261 aatgtctcga gtctcccgtc aactgcaagg actaggagtt gggttgagga tcaaaacaga 7321 aatctgtcac ctttcatgag gggggctcac aacatatcgt ttgtcacccc accatctagc 7381 agatcctcta gccagggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact 7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaggcg aggggagtca 7501 cgggtgtaa //