Typing tool
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Typing tool
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Complete norovirus genomes
| AB541321 | GII.4 Osaka | |
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| GII.P31 |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS AB541321 7509 bp RNA linear VRL 03-AUG-2010
DEFINITION Norovirus Hu/GII-4/Osaka2/2007/JP genomic RNA, complete genome.
ACCESSION AB541321
VERSION AB541321.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Osaka2/2007/JP
ORGANISM Norovirus Hu/GII-4/Osaka2/2007/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII-4/Osaka2/2007/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Osaka2/2007/JP"
/isolation_source="stool"
/db_xref="taxon:707504"
/country="Japan:Osaka"
CDS 1..5100
/note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13893.1"
/translation="MKMASNDASAAAAANSNNDIAKSSSDGVLSNMAVTFKRALGARP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEEELVVSYSAKDGVSGLPELTTVKQPE
ETNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILMAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTLTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLRDVKTM
PDLKQALKNVSIKKCQIVYGGSTYTLEADGKDSVKVDKVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRITKRMNIQNLWSKPQVEDTEEAASKDGC
SRPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGTKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTGKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5081..6703
/codon_start=1
/product="VP1"
/protein_id="BAJ13894.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPQNAPSEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRSDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG
STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
CDS 6703..7509
/codon_start=1
/product="VP2"
/protein_id="BAJ13895.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSISS
NASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgctg ccaacagcaa caacgacatc
61 gcaaaatctt caagtgacgg tgtgctatct aacatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaaacagcc gcccccgaag gaaataccac ccagaccccc acgaccaccc
181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga agaactagtg
241 gtttcctaca gcgccaaaga tggcgtttcc ggcctgcctg agctcaccac tgtcaaacaa
301 ccggaagaaa ccaacacggc gttcagtgtt cccccactca accagaggga gaatagggac
361 gccaaggaac cactaactgg aacaattatt gagatgtggg atggagaaat ataccactac
421 ggcctgtatg tggaacgagg tcttatactt ggtgtgcaca agccaccggc agccatcagc
481 cttgccaagg tcgagctaac accactctct ttgttctgga gacctgtata caccccccag
541 tatctcatct ctccagacac tcttaggaga ctgcatggag agtcattccc ctacactgca
601 tttgacaaca attgctacgc cttctgttgt tgggtattag acctaaacga ctcatggcta
661 agcaggagaa tgattcagag gacaacaggt ttcttcaggc cataccagga ttggaacagg
721 aaaccccttc ccactatgga tgattccaaa ttaaagaagg tggctaacat attcttgtgc
781 actttgtctt cactattcac caggcccatt aaggacataa tagggaagtt gaaacctctt
841 aacattctca acattctggc tacgtgcgat tggaccttcg caggcatagt ggagtccttg
901 atactcatgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc
961 gcccctttac taggtgatta cgagctgcaa ggacctgagg accttgcagt agaactagtc
1021 ccaatagtga tggggggaat aggtttggtg ctaggattta ccaaagagaa aattggaaag
1081 atgttgtcat ctgctgcatc cactttgaga gcctgtaaag accttggtgc atacggactg
1141 gaaattttga aattggtcat gaaatggttc tttccaaaga aagaggaagc aaacgaattg
1201 gctatggtga ggtccatcga ggatgcggtg ctggacctcg aggcaattga aaacaatcac
1261 atgaccaccc tgctcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt
1321 gaggaggaga aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca
1381 atcaactctc ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa
1441 gaactctcca gcaggccgag acctgttgtt gtgatgatat cgggaaaacc agggataggg
1501 aaaactcacc ttgccaggga gctggccaag aagatcgcag cctccctcac aggggaccag
1561 cgcgtgggtc tcatcccgcg caatggtgtc gaccattggg acgcgtacaa gggagaaagg
1621 gttgtcctgt gggacgacta tggaatgagt aaccccatcc atgatgccct caggttgcag
1681 gaacttgctg acacttgccc cctcacgcta aattgtgaca ggattgagaa caaagggaaa
1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat
1801 tatgtcaact ttgaagcgtg ctcgaggcgc attgacttcc tcgtgtacgc agaagctcct
1861 gaggtggaaa aagcaaagcg cgacttccca ggccaacctg acatgtggaa gaacgctttc
1921 agtcctgact tctcgcacat aaaactgtca ttggctccac agggtggttt tgataagaac
1981 ggcaacaccc cacatggaaa aggcgtcatg aagaccctca ctactggttc cctcatcgcc
2041 cgagcatcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccaactctc
2101 accactttca actttgaccg caacaagatc cttgctttca gacagcttgc tgctgaaaac
2161 aagtatgggc tcatggacac aatgagagtt ggaaaacagc tcagggatgt caagaccatg
2221 ccagacctca aacaagcact caagaatgtc tcgatcaaaa agtgccagat agtgtacggt
2281 ggtagcacct acacacttga ggccgatggc aaggacagtg tgaaagttga caaagtgcaa
2341 agtgccactg tgcaaaccaa caacgaacta gccggtgccc tacaccacct aaggtgcgcc
2401 agaattagat actatgtcaa gtgtgtccag gaggcactgt actccattat ccaaattgct
2461 ggggctgcat ttgtcaccac gcgcattact aagcgcatga acatacagaa cctctggtcc
2521 aagccacagg tggaggacac agaagaggcg gccagcaaag atggttgctc aagacccaaa
2581 gatgatgaag agtttgtcgt ttcatccgac gacatcaaaa ctgagggcaa gaaagggaaa
2641 aacaagactg gccgtggtaa gaagcacaca gccttctcaa gcaaagggct cagtgatgag
2701 gagtatgatg agtacaagag aatcagagaa gagaggaatg gcaagtactc catagaagag
2761 taccttcagg acagagacaa gtactatgag gaggtggcca ttgccagggc aaccgaagag
2821 gacttctgtg aagaagaaga ggccaaaatc cggcagagaa ttttcagacc aacaaggaaa
2881 caacgcaaag aagagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga
2941 aacccagaag acttcaaacc caagggaaaa ctgtgggccg acgatgacag aagtgttgac
3001 tacaatgaga aactcaactt tgaggcccca ccaagcatct ggtcgcggat agtcaacttt
3061 ggttcaggtt ggggcttctg ggtctccccc agtctgttta taacatcaac acatgtcata
3121 ccccagggta caaaagagtt cttcggagtc cccatcaaac aaatccagat acacaaatca
3181 ggtgaattct gccggttaag attcccaaaa ccaatcagaa ctgatgtgac gggcatgatt
3241 ctagaagaag gtgcgcccga aggaaccgtg gccacactac tcatcaagag accaactggg
3301 gaactcatgc ctctggcagc tagaatggga acccatgcaa ccatgaagat tcaagggcgc
3361 acagttggag gacaaatggg catgctcctg acaggatcca acgccaagag tatggaccta
3421 ggcacaacac cgggtgactg cggctgtccc tacatctaca agagggggaa tgactacgtg
3481 gtcataggag tccacacggc cgctgcccgt ggaggaaaca ctgtcatatg tgccacccag
3541 gggagtgaag gggaagccac acttgaaggt ggtgacaata aaggaacata ctgtggtgca
3601 ccaatcttgg gcccagggag tgccccaaaa ctcagtacta agactaagtt ttggagatca
3661 tccacaacac cactcccacc tggcacctac gaaccagcct acctcggtgg caaggacccc
3721 agagtcaaag gtggcccttc attgcaacaa gttatgaggg accagctaaa accattcaca
3781 gaacccagag gtaaaccacc aagaccaagt gtgttggaag ctgccaagaa aaccatcatc
3841 aatgttcttg agcaaacaat tgacccaccc caaaaatggt cattcgcgca agcttgcgca
3901 tctcttgaca aaaccacttc cagcggccat ccgcaccata tgcggaagaa tgactgttgg
3961 aacggggagt cattcacagg aaaattggca gatcaggcct ccaaggccaa tctaatgttt
4021 gaagagggga agaacatgac tccagtctac acaggtgcac ttaaggatga actggtaaag
4081 actgacaaaa tttatggtaa gatcaagaag aggcttctgt ggggctcaga cctggcgact
4141 atgatacggt gcgcccgagc ttttggaggc cttatggatg aactcaaggc acattgtgtc
4201 accctccctg tcagagttgg tatgaacatg aatgaggatg gccccatcat ctttgagaaa
4261 cactccagat ataaatatca ttatgatgct gattactccc ggtgggactc aacacaacaa
4321 agggatgtgc tagcagcagc cctagaaatc atggttaaat tctctccaga accacacctg
4381 gctcaaatag ttgcagaaga cctactttcc cctagtgtaa tggatgtggg tgactttcaa
4441 atatcaataa gtgagggact cccctctggg gtgccttgca cctcccaatg gaattccatc
4501 gcccattggc tcctcactct ttgtgcactc tctgaagtca cggacctgtc ccctgacatc
4561 atccaggcca attccctttt ctccttctat ggtgatgatg agattgtgag tacagacata
4621 aagttggatc cagagaaact gacgggaaaa ctcaaggagt acgggctgaa accaacccgc
4681 cccgacaaaa ctgaaggacc cctcgttatc tctgaagatc tggatggcct gacattcctg
4741 cggaggactg tgacccgtga cccagctggt tggtttggaa aattggaaca aagctcaatt
4801 ctcaggcaaa tgtactggac caggggcccc aaccatgaag atccatctga aacaatgata
4861 ccacactccc aaagacccat acaattgatg tctctgctgg gcgaggctgc actccacggc
4921 ccggcattct atagtaaaat tagtaagtta gtcattgcag agttgaagga aggtggcatg
4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggtaat
5161 ggctttggag cccgttgtag gtgccgctat tgcggcgcct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt ttacagtgtc
5281 cccccagaat gctcccagtg agatactatg gagtgcgccc ttgggccctg atttgaaccc
5341 ttacctttct catctggcca gaatgtataa tggttatgca ggtggttttg aagtgcaggt
5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccacctaa
5461 ctttccaact gaaggcttga gccctagcca ggttactatg ttcccccata taatagtaga
5521 tgttaggcaa ttggaacctg tgttgatccc cttacctgat gttaggaata acttctatca
5581 ctacaaccag tcaaatgacc ctaccattaa attgatagca atgttgtaca caccacttag
5641 ggccaataat gctggggatg atgtcttcac agtctcttgt cgagtcctca cgagaccatc
5701 ccctgacttt gacttcatat ttctggtacc accaacagtt gaatcaagaa ccaaaccatt
5761 taccgttcca atcttaactg ttgaggaaat gaccaattca agattcccca ttcctttgga
5821 aaggttgtac acgggtccca gcagtgcttt tgttgtccag ccacaaaacg gcaggtgcac
5881 gactgatggc gtgctcttag gtaccaccca gctgtctgct gtcaacatct gcacctttag
5941 aggggatgtc actcacattg caggctctcg caattataca atgaatttgg cctctcaaaa
6001 ttggaacaac tatgatccaa cagaagaaat cccagccccc ctgggcaccc cagatttcgt
6061 gggaaagatc caaggcatgc tcacccaaac cacaagaagt gatggctcga cccgcggcca
6121 caaggccaca gtgctcactg ggagtgccga cttcgcccca aaattgggca gagttcaatt
6181 cgccactgac acagacaacg atttcgaatc tggccaaaac acgaaattca ccccagttgg
6241 cgtcatccag gatggctcca ctacccaccg aaatgaacct caacaatggg tactcccaaa
6301 ttactcaggt agaactggtc ataatgtgca tctagcccct gctgttgccc ccacttaccc
6361 gggtgagcaa ctccttttct tcaggtccac tatgcccgga tgtagcgggt accccaacat
6421 ggatctagat tgcttgctcc cccaggagtg ggtgcagcac ttctaccaag aagcagctcc
6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttctctt
6541 tgagtgcaag ctccataaat caggatatgt cacagtggct cacactggtc agcatgattt
6601 ggttattccc cccaatggtt attttagatt tgattcctgg gttaatcaat tctacacact
6661 tgcccccatg ggaaatggga cggggcgtag acgtgctgta taatggctgg agctttcttt
6721 gctggattgg catctgatgt ccttggctct ggacttggtt ccctaatcaa tgctggggct
6781 ggggctatca accaaaagat tgattttgaa aataacagaa aactgcagca agcttctttc
6841 cagtttagca gcaatctgca acaggcttcc tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccactaaaaa gttgcaacag gaaatgatga aagtcaaaca ggcaatgctc
6961 ttagaaggtg gattctctga aacagatgca gcccgtgggg caatcaacgc ccccatgaca
7021 aaggctttgg actggagcgg aacaaggtac tgggcccctg atgctaggac tacaacatac
7081 aatgcaggcc gcttctccac ccctcaacct tcgggggcat tgtcaggaag aatcaatccc
7141 aggactccca cccccgctcg gggttcctct agcatatctt ctaatgcttc tactgctact
7201 tctgtatatt caaatcaaac tgtttcaacg agacttggtt ctacagctgg ttctggcacc
7261 aatgtctcga gtctcccgtc aactgcaagg actaggagtt gggttgagga tcaaaacaga
7321 aatctgtcac ctttcatgag gggggctcac aacatatcgt ttgtcacccc accatctagc
7381 agatcctcta gccagggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact
7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaggcg aggggagtca
7501 cgggtgtaa
//