Typing tool
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Complete norovirus genomes
AB541310 | GII.4 New Orleans | ||
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GII.P4 Hunter |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB541310 7509 bp RNA linear VRL 03-AUG-2010 DEFINITION Norovirus Hu/GII-4/Niigata1/2008/JP genomic RNA, complete genome. ACCESSION AB541310 VERSION AB541310.1 KEYWORDS . SOURCE Norovirus Hu/GII-4/Niigata1/2008/JP ORGANISM Norovirus Hu/GII-4/Niigata1/2008/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T., Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H. CONSRTM Norovirus Surveillance Group of Japan TITLE Genome Recombination for Independent and Concurrent Evolution of Non-structural and Capsid Proteins of Norovirus GII/4 in Humans JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Motomura,K. and Sato,H. TITLE Direct Submission JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan COMMENT These sequences were determined at our laboratory. FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII-4/Niigata1/2008/JP" /mol_type="genomic RNA" /strain="Hu/GII-4/Niigata1/2008/JP" /isolation_source="stool" /db_xref="taxon:707493" /country="Japan:Niigata" CDS 1..5100 /note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAJ13860.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELTKNIPPPPPNGEDDIVVSYNVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDLIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGRPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STLQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDEVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAJ13861.1" /translation="MKMRSSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTGSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVSFFTGEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAJ13862.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQSSGALPGRANLRAAVPARGSSSISS NFFTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMEGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcactttcaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccaccc 181 actccagaac tgactaaaaa catcccccct cccccaccca acggagagga tgacatagtg 241 gtttcttata atgttaaaga tggtgtctct ggtttgcctg atctttccac cgtcaggcaa 301 ccagaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga aaatagagat 361 gctaaggagc cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat 421 ggcctgtatg tagagcgagg tcttgttcta ggtgtgcaca aaccaccagc tgccatcagc 481 ctcgccaggg tcgaactaac accactttcc ttgtactgga gacctgtgta tactccccag 541 tacctcatct ccccagacgc tctcaagaaa ctacacggag agacgttccc ctacacagcc 601 tttgacaaca actgctatgc cttttgttgt tgggtcctgg acctaaacga ctcgtggctg 661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg 721 aaacccctcc ccactatgga tgactccaag ttaaagaagg tagctaacat attcctgtgt 781 gcactgtctt cgctattcac caggcctata aaagatttaa tagggaagct aaggcctctt 841 aacatcctca acatcttggc ctcatgtgat tggacttttg caggcatagt ggagtccttg 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac tcggtgatta cgagctacaa ggacctgagg accttgcagt agagctcgtc 1021 cctgtagtga tggggggaat tggtctggtg ctaggattca ccaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag atcttggtgc atatgggcta 1141 gagatcctga agttggtcat gaagtggttc ttcccgaaga aagaggaagc aaatgaactg 1201 gctatagtga gatccatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac ccttgacctt 1321 gaggaggaga aagccaggaa actttcaacc aagtctgctt cacctgacat cgtgggcaca 1381 atcaacgccc ttctggcgag aatcgctgct gcacgttctc tggtgcatcg agcgaaggag 1441 gaactttcta gcagaccaag accggtggtg ttgatgatat caggcagacc aggaataggg 1501 aagacccacc ttgctaggga agtggccaag agaatcgcag cctcccttac aggagaccag 1561 cgtgtaggcc tcgtcccacg caatggcgtc gatcattggg atgcgtacaa gggggagagg 1621 gtcgttctgt gggacgacta tggaatgagc aatcccatcc acgatgctct cagattgcaa 1681 gaactcgctg acacttgtcc cctcacccta aactgtgaca ggattgagaa caaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ctaacccagc accactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaggtcgaaa aggcgaagcg tgacttccca ggccaacccg acatgtggaa gaacgccttc 1921 agttctgatt tttcacacat aaagctaaca ttggctccac agggtggttt cgacaagaac 1981 gggaacaccc cacacgggaa gggcgtcatg aagactctca ccaccggctc ccttattgcc 2041 cgggcatcag ggctactcca tgagaggcta gatgaatttg aactacaggg cccaactctc 2101 accaccttca actttgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaac 2161 aaatatgggt tgatggacac aatgaaagtt gggaggcagc tcaaggatgt cagaacaatg 2221 ccagagctca agcaagcact caagaatatt tcgatcaaga agtgccagat agtgtatagt 2281 ggtagcacct acacactcga gtctgatggc aagggcaatg tgaaggttga cagagttcaa 2341 agcacctccg tgcagaccaa caatgagctg gctggcgccc tacaccatct aaggtgcgcc 2401 agaataagat actatgtcag gtgtgtccag gaggccctgt attccatcat ccagattgct 2461 ggggctgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaaa cctatggtct 2521 aagccacaag tggaaaatac agaggagact accagcaagg acgggtgtcc aaaacccaaa 2581 gatgatgaag agttcgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaaa 2641 aacaagactg gtcgcggcaa gaagcacaca gccttctcaa gcaaaggtct cagtgatgaa 2701 gagtacgatg aatacaagag gattagagaa gaaaggaacg gtaagtactc tatagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aacaaggaaa 2881 caacgcaagg aggaaagagc ttctctcggt ttagttacag gttctgaaat taggaaaaga 2941 aatccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag gagtgtggac 3001 tacaacgaga aactcagttt tgaagcccca ccaagcatct ggtcgagaat agtcagtttt 3061 ggttcaggtt gggggttctg ggtctccccc agtttgttca taacatcaac ccatgtcata 3121 ccccagggag caaaggagtt ctttggagtc cccatcaaac aaattcaggt acacaagtca 3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttagaagaag gtgcacccga gggcaccgtg gtcacactac tcatcaaaag gcccactgga 3301 gaactcatgc ccttagcagc taggatgggg acccatgcaa ccatgaaaat ccaaggacgc 3361 actgttggag gccagatggg catgcttctg acaggatcca acgccaaaag catggatctg 3421 ggtaccacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg 3481 gtcattggag tccacacggc tgccgctcgc gggggcaaca ctgtcatatg tgccacccag 3541 gggagtgagg gagaggccac acttgaaggt ggtgacaata aagggacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg 3661 tccacagcac cactcccacc tggcacttac gaaccagcct atcttggtgg caaggacccc 3721 agagtcaagg gtggcccttc actgcagcag gtcatgaggg atcagctgaa gccattcaca 3781 gagcccaggg gcaggccacc aaagccaagt gtgttggaag ctgctaagaa aaccatcatc 3841 aatgtccttg aacaaacaat tgatccacct gagaaatggt cgttcgcaca agcttgcgcg 3901 tcccttgaca agaccacctc cagtggccat ccgcatcaca tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggctaa cctgatgttt 4021 gaagaaggga agaacatgac gccagtctat acagctgcgc ttaaggacga attagttaaa 4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggttcgga tttggcgacc 4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc gcactgtgtc 4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cactctaggt acacatacca ctatgatgct gattactctc gatgggattc aacactacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaagt tctccccaga accacatttg 4381 gcccaggtag tcgcagaaga ccttctttct cctagcgtgg tggacgtggg tgacttcaca 4441 atatcaatta acgagggtct cccctctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcaccct ctgtgcgctc tctgaagtta caaacttgtc tcctgacacc 4561 atacaagcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aaattggacc cagaaaagtt gacagcaaag ctcagggaat atgggttaaa gccaacccgc 4681 cccgacaaaa ctgaaggacc ccttgtcatc tctgaagact tgaatggcct gactttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata 4801 cttaggcaaa tgtactggac taggggttcc aaccatgaag acccatctga aacaatgatt 4861 ccacactccc aaagacccat acaactgatg tccctactgg gggaggccgc actccacggc 4921 ccagcattct acagcaaaat cagcaagtta gtcattgcag agctaaaaga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatga ggtcgagtga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaatttcgt acaagcccct ggtggagagt tcacagtatc 5281 ccctagaaac gctccaggtg aaatactgtg gagcgcgccc ttaggtcctg atttgaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 gatcctcgcg gggaacgcgt tcaccgccgg aaagatcata tttgcagcag tcccaccaaa 5461 tttcccaact gaaggcttga gccccagcca ggtcactatg ttcccccaca taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc cctacccgat gttaggaata atttctatca 5581 ctacaaccaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag 5641 ggccaataat gctggggacg atgtcttcac aggttcttgt cgggttctca cgagaccatc 5701 ccccgatttt gatttcatat ttttagtacc acccacagtt gagtcaagaa ctaaaccatt 5761 ctctgtctca ttttttactg gtgaggagat gaccaattca agattcccca ttcctttgga 5821 aaagctgttc acgggtccca gcagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcctag gtaccaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccatatta caggtagtcg taactacaca atgaatttgg ctactcaaaa 6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaagggca gatggctcga cccgcggcca 6121 caaagctaca gtgtacactg ggagcgccga ttttgctcca aaactgggta gagttcaatt 6181 tgccactgac acagacaatg attttgatgc taaccaaaac acaaagttca ccccagtcgg 6241 tgtcatccag gatggtgata ctgcccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttactcaggc agaaatagtc acaatgtgca cctggccccc gctgtagccc ccacttttcc 6361 gggtgagcaa cttctcttct tcagatccac tatgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctatcaag aggcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacaccggcc aacatgattt 6601 ggttattccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcatta taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctcc ggacttggtt ctctgatcaa tgccggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagca gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca ggcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac tacaacatac 7081 aatgcaggcc acttttccac cccccaatcc tcgggggcac tgccaggaag agctaatctt 7141 agggctgctg tccctgctcg aggctcctcc agcatttctt ctaacttttt tactgctact 7201 tctgtgtact caaatcaaac tatttcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtttcga gcctcccgtc aactgcaagg gctaggagct gggttgagga tcaaaatagg 7321 aatttgtcac ctttcatgga gggggcccac aacatatcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact 7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca 7501 cgggcgtaa //