Typing tool
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Typing tool
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Complete norovirus genomes
| AB541305 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..5103
ORF2: 5084..6706
ORF3: 6706..7512
LOCUS AB541305 7512 bp RNA linear VRL 03-AUG-2010
DEFINITION Norovirus Hu/GII-4/Nagano3/2007/JP genomic RNA, complete genome.
ACCESSION AB541305
VERSION AB541305.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Nagano3/2007/JP
ORGANISM Norovirus Hu/GII-4/Nagano3/2007/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7512)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus Hu/GII-4/Nagano3/2007/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Nagano3/2007/JP"
/isolation_source="stool"
/db_xref="taxon:707488"
/country="Japan:Nagano"
CDS 1..5103
/note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13845.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LRPLNIINILASCDWTFAGIVESLILLAEFSLGVFWTPPDVSAMIAPLLGDFELQGPE
DLVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEENELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLARE
VAKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADT
CPLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKT
MPELKQALKNISIKKCQIVYNGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHL
RCARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDG
CPKPKDIEEFVISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGL
VTGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVS
PSLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPE
GTVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPIL
GPGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDC
WNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSD
LATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRG
PNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQ
EPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5084..6706
/codon_start=1
/product="VP1"
/protein_id="BAJ13846.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6706..7512
/codon_start=1
/product="VP2"
/protein_id="BAJ13847.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQVEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTSTPARGSPSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacaa aatgttttct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaaacagcc ccccccgagg gaaataccac aaagaccccc acgaccacct
181 actccagaac tggtcaaaaa gatccctcct cccccgccca acggagagga tgaagtagtg
241 gtttcttata gtgccaaaga tggcgtttcc ggtttacctg agctttccac cgtcaggcaa
301 ccggaagaaa ccaacacggc cttcagtgtc cctccactca atcagaggga gaacagggat
361 gctaaggagc cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg ttgagcgagg tcttgtgctg ggtgtgcaca aaccaccagc tgccattagc
481 ctcgccaagg tcgaactaac accactctcc ttgttctgga gacctgtgta cactcctcag
541 tacctcatct ctccagacac tctcaagaaa ttacacggag aaacattccc ctacacagcc
601 ttcgacaaca attgctatgc cttttgttgc tgggtcctgg atctaaacga ctcgtggctg
661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg
721 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tagctaatat attcctgtgc
781 accctgtctt cgcttttcac caggcccata aaagacataa tagggaagtt aaggcctctc
841 aacatcatca acatcctggc ttcatgtgat tggactttcg caggcatagt ggagtccttg
901 atactcttgg cagagttctc tttgggagtc ttctggacac ccccagatgt gtctgcgatg
961 attgccccct tactcggtga tttcgagtta caaggacctg aggaccttgt agtagagctc
1021 gtccctgtag taatgggggg aattggtttg gtgctaggat tcaccaaaga gaagattgga
1081 aaaatgttgt catctgctgc atctaccttg agagcttgta aagatcttgg tgcatatggg
1141 ctagagatcc taaagttagt catgaagtgg ttcttcccga agaaagagga agaaaatgaa
1201 ctggctatgg tgagatccat cgaggatgca gtactggacc ttgaggcaat tgaaaacaac
1261 catatgacca ccttgctcaa agacaaagac agcctggcaa cctatatgag aacccttgac
1321 ctcgaggaag agaaagccag aaaactctca accaagtctg cttcacctga catcgtgggc
1381 acaatcaacg cccttctggc gagaatcgcc gctgcacgct ccctggtgca ccgagcgaag
1441 gaggagcttt ccagcagacc aagacctgta gtcttgatga tatcaggcag accaggaata
1501 gggaagaccc accttgctag ggaagtggct aagagaatcg cagcctccct cacaggagat
1561 cagcgtgtgg gtctcatccc acgcaatggc gtcgatcact gggatgcgta caagggggag
1621 agggtcgtcc tatgggacga ctatggaatg agcaatccca tccacgacgc cctcaggctg
1681 caagaactcg ctgacacttg ccccctcact ctaaattgtg acaggattga gaataaagga
1741 aaggtctttg acagcgatgt catcatcatc actactaacc tggccaaccc agcaccactg
1801 gactatgtca actttgaagc gtgctcgagg cgcatcgatt tcctcgtgta tgcagaagcc
1861 cccgaggtcg aaaaggcgaa gcgtgacttc ccgggccaac ctgacatgtg gaaaaacgct
1921 tttagttctg atttctcaca cataaaattg gcactggctc cacaaggtgg ctttgataag
1981 aacgggaaca ccccacacgg gaagggcgtc atgaagactc tcaccactgg ctccctcatt
2041 gcccgggcat cagggctgct ccatgagaga ttggatgagt ttgaactaca gggcccagct
2101 cttaccacct tcaactttga ccgcaacaaa gtgcttgcct tcaggcagct tgctgctgaa
2161 aacaaatacg ggttgatgga cacaatgaaa gttgggaggc agctcaagga tgtcaaaacc
2221 atgccagaac ttaaacaagc actcaagaat atctcaatca agaagtgcca gattgtgtat
2281 aatggttgca cctacacact tgagtctgat ggtaagggca atgtgaaagt tgacagagtt
2341 cagagcacct ccgttcagac caacaatgag ctggctggcg ccctgcacca tctaaggtgc
2401 gccagaatca ggtactatgt caagtgtgtt caggaggccc tgtattctat catccagatt
2461 gctggggctg catttgtcac cacgcgcatc atcaagcgtg tgaacattca agacttatgg
2521 tccaagccac aagtggaaaa cacagaagag gctaccaaca aggacgggtg cccaaaaccc
2581 aaagatattg aggagttcgt catttcatct gacgacatta aaaccgaggg taagaaaggg
2641 aagaacaagg ctggccgtgg caagaagcac acagccttct caagtaaagg tctcagtgat
2701 gaagagtatg atgagtacaa gagaattaga gaggagagga atggcaagta ctccatagaa
2761 gagtacctac aggacaggga caaatactat gaggaggtgg ccattgccag ggcgaccgag
2821 gaagacttct gtgaagagga ggaggccaag atccggcaaa ggatcttcag accaacaagg
2881 aaacaacgca aggaagaaag agcttctctc ggtttagtca caggttctga aattaggaaa
2941 aggaacccag aagacttcaa gcctaagggg aaactatggg ctgacgatga cagaagtgtg
3001 gactacaatg aaaaactcag ctttgaggcc ccaccaagca tctggtcaag gatagtcaac
3061 tttggctcag gttggggctt ctgggtctcc cccagcctgt tcataacatc aacccacgtc
3121 ataccccagg gcgcaaagga gttctttgga gtccccatca aacaaattca ggtgcacaag
3181 tcaggcgaat tctgtcgctt gaggttccca aaaccaatca ggactgatgt gactggcatg
3241 atcttggaag aaggtgcgcc cgaaggcacc gtggtcacac tactcatcaa aaggtctact
3301 ggagaactca tgcccctagc agctagaatg gggacccatg caaccatgaa gattcaaggg
3361 cgcactgttg gaggtcagat gggcatgctt ctgacgggat ccaacgccaa aagcatggat
3421 ctaggcacca caccaggtga ttgcggctgt ccctacatct acaagagagg aaacgactat
3481 gtggtcattg gagtccacac ggctgccgct cgtgggggaa acactgtcat atgtgccacc
3541 cagggaggtg agggggaagc tacacttgaa ggtggtgaca gtaagggaac atactgtggt
3601 gcaccaatcc taggcccagg gagtgcccca aaacttagca ccaaaaccaa attctggagg
3661 tcatccacag caccactccc acctggcacc tatgaaccag cctacctagg tggcaaggac
3721 cccagggtca agggtggccc ctcgttgcag caagtcatga gggaccagct gaaaccattt
3781 acagagccta ggggtaagcc accaaagcca agcgtgttag aagctgccaa gaaaaccatc
3841 atcaatgtcc ttgaacaaac aattgaccca cctgagaagt ggtcgttcgc acaagcttgc
3901 gcgtcccttg acaagaccac ttctagcggc catccgcacc acatgcggaa aaacgactgc
3961 tggaacgggg aatccttcac aggcaagctg gcagaccagg cttccaaggc caacttgatg
4021 tttgaagaag ggaagaacat gaccccagtc tacacaggtg cacttaagga tgaattagtc
4081 aaaactgaca aaatttatgg taagatcaag aagaggcttc tctggggctc ggatttagca
4141 accatgatcc ggtgtgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt
4201 gtcacactcc ctatcagagt tggtatgaat atgaatgagg atggccccat catcttcgag
4261 aagcattcca ggtacagata ccactatgat gctgattact ctcggtggga ttcaacacaa
4321 cagagagccg tgctggcagc tgctctagaa atcatggtta aattctcctc agaaccacat
4381 ttggctcagg tagtcgcaga agaccttctt tctcctagcg tggtggatgt gggtgacttc
4441 acaatatcaa tcaacgaggg tcttccctct ggggtgccct gcacctccca atggaactcc
4501 atcgcccact ggcttctcac tctctgtgca ctctccgaag ttacaaattt gtccccagac
4561 atcatacagg ctaattctct cttctccttc tatggtgatg atgaaattgt tagtacagac
4621 ataaaattag atccagagaa gttgacagca aagcttaagg aatacgggtt gaaaccaacc
4681 cgccctgata aaactgaagg acctcttgtt atttctgaag acttagatgg tttgactttc
4741 ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaattgga gcagagctca
4801 atactcaggc aaatgtactg gactaggggc cccaaccatg aagatccatc tgaatcaatg
4861 attccacact ctcaaagacc catacaattg atgtccttac tgggagaggc cgcactccac
4921 ggcccaacat tctacagtaa aatcagcaaa ttagtcattg cagagctaaa agaaggtggt
4981 atggattttt acgtgcccag gcaagagcca atgttcagat ggatgagatt ctcagatctg
5041 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa
5101 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt
5161 tatggctttg gagcccgttg tcggtgccgc tattgcggcg cctgtagcgg gccaacaaaa
5221 tgtaattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agttcacagt
5281 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttaggcc ctgatctgaa
5341 tccctaccta tctcatttgg ccagaatgta taatggttat gcaggtggct ttgaagtgca
5401 ggtgatcctc gcggggaacg cgttcaccgc cggaaaaatt atatttgcag cagtcccacc
5461 aaattttcca actgaaggct tgagtcccag ccaggtcact atgttccccc acataatagt
5521 ggatgttagg caattggaac ctgtgttgat ccccttacct gatgttagga ataacttcta
5581 tcactataat cagtcaaatg attctaccat taaattgata gcaatgttgt atacaccact
5641 tagggctaat aatgctgggg aagatgtctt tacagtctct tgtcgagttc tcacgaggcc
5701 atcccctgat tttgatttta tatttttggt gccacctaca gttgagtcaa gaactaaacc
5761 atttactgtc ccaatcttaa ctgttgaaga gatgaccaat tcaagattcc ccattccttt
5821 ggaaaaattg ttcacgggtc ccagcagtgc ctttgttgtt caaccacaaa atggcagatg
5881 cacgactgat ggcgtgctct taggcaccac ccaactgtct cctgtcaaca tctgcacctt
5941 cagaggggat gtcacccaca ttgcaggttc tcgtaattac acaatgaatt tggcttctct
6001 aaattggaac aattatgacc caacagaaga aattccagcc cctctaggaa ccccagattt
6061 cgtgggaaag atccaaggag tgctcactca aaccacaaag ggagatggct cgacccgtgg
6121 ccataaagct acagtttaca ctgggagtgc cccctttact ccaaagctgg gcagtgttca
6181 attcagtact gatacagaaa atgattttga aactcaccaa aacacaaaat tcaccccagt
6241 cggtgtcatc caggatggtg gcaccaccca ccgaaatgaa ccccaacaat gggtgctccc
6301 aagttattca ggtagaaatg tccctaatgt acacctagcc cctgctgtag cccccacttt
6361 tccgggtgaa caacttcttt tctttaggtc cactatgccc ggatgcagcg ggtatcccaa
6421 catggatttg gattgcctgc tcccccagga gtgggtgcag cacttctacc aagaggcagc
6481 tccagcacaa tctgatgtgg ctctattgag atttgtgaat ccagacacgg gtagggtcct
6541 gtttgagtgc aagcttcaca aatcaggcta tgtcacagtg gctcacaccg gccagcatga
6601 tttggtcatc ccccccaatg gttattttag gtttgattcc tgggttaatc agttctacac
6661 acttgccccc atgggaaatg gaacggggcg tagacgtgct ttataatggc tggagctttc
6721 tttgctggat tggcatctga tgtccttagc tctggacttg gttccctaat caatgctggg
6781 gctggggcta tcaaccaaaa gattgatttt gaaaataaca gaaaattgca gcaagcttcc
6841 ttccagttta gcagtaatct acaacaggct tcctttcaac atgataaaga gatgctccaa
6901 gcacaagttg aggccactaa aaagttgcaa caggaaatga tgaaagtcaa acaggcaatg
6961 ctcttagaag gtggattctc tgaaacagat gcagcccgtg gggcaatcaa cgcccctatg
7021 acaaaggctt tggactggag cggaacaagg tactgggccc ctgatgctag gactacaaca
7081 tacaatgcag gccgtttttc cacccctcaa ccttcggggg cactgccagg aagaatcaat
7141 cccaggactt ccacccccgc tcggggctcc cctagcacat cttctaatgc ttctactgct
7201 acttctatat attcaaatca aactgtttca acgagacttg gttctacagc tggttctggc
7261 accaatgtct cgagtctccc gtcaactgca aggactagga gttgggttga ggatcaaaac
7321 agaaatttgt cacctttcat gaggggggct cacaacatat cgtttgtcac cccaccatct
7381 agcagatcct ctagccaagg cacagtctca accgtgccta aagaagtttt ggactcctgg
7441 actggcgctt tcaacacgcg caggcagcct ctcttcgctc acattcgtag gcgaggggag
7501 tcacgggtgt aa
//