Typing tool
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Complete norovirus genomes
AB541275 | GII.4 Den Haag | ||
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GII.P4 Hunter |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7506LOCUS AB541275 7506 bp RNA linear VRL 03-AUG-2010 DEFINITION Norovirus Hu/GII-4/Iwate5/2007/JP genomic RNA, complete genome. ACCESSION AB541275 VERSION AB541275.1 KEYWORDS . SOURCE Norovirus Hu/GII-4/Iwate5/2007/JP ORGANISM Norovirus Hu/GII-4/Iwate5/2007/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T., Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H. CONSRTM Norovirus Surveillance Group of Japan TITLE Genome Recombination for Independent and Concurrent Evolution of Non-structural and Capsid Proteins of Norovirus GII/4 in Humans JOURNAL Unpublished REFERENCE 2 (bases 1 to 7506) AUTHORS Motomura,K. and Sato,H. TITLE Direct Submission JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan COMMENT These sequences were determined at our laboratory. FEATURES Location/Qualifiers source 1..7506 /organism="Norovirus Hu/GII-4/Iwate5/2007/JP" /mol_type="genomic RNA" /strain="Hu/GII-4/Iwate5/2007/JP" /isolation_source="stool" /db_xref="taxon:707458" /country="Japan:Iwate" CDS 1..5100 /note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAJ13755.1" /translation="MKMASNDASAAAVANSNNDTAKSSGDGVLSSMAVTFKRALGARP KQPPPRVIPQRPPRPPTPELIKKTPPPPPNGEDDVVVSYSAKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTNLEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLYWRPVYTPQYLISPNTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTTDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELSGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLIDTMKVGRQLKDVTTM SELKQALKNISIKKCHIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEAANKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGTPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKTHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAJ13756.1" /translation="MKMASSDANPPDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRSYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFQTHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRDVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7506 /codon_start=1 /product="VP2" /protein_id="BAJ13757.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRIPTPARGSSSTSS NASTATSIYSNQTVSTRLGSTAAGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNIS FVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLSAHIRRRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caggtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gtaataccac aaagaccccc acgaccaccc 181 actccagaac taatcaaaaa gaccccccct cccccaccca acggagagga tgacgtagtg 241 gtttcttata gtgccaaaga tggcgtctct ggtttgcctg atctttccac cgtcaggcaa 301 ccggaagaat ccaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat 361 gctaaggaac cactgactgg aacaaatctg gaaatgtggg atggagaaat ctaccattat 421 ggcctgtatg ttgagcgagg tcttgtgctg ggtgtgcaca aaccaccagc tgccattagc 481 ctcgccaagg tcgaactaac accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccaaacac tctcaagaaa ttgcacggag aaacatttcc ctacacagcc 601 tttgacaaca attgctatgc cttttgttgc tgggtcctgg atctaaacga ctcgtggctg 661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg 721 aaacccctcc ctactacgga tgattccaaa ttaaagaagg tagctaacat attcctgtgt 781 accctgtctt cgctattcac caggcccata aaagacataa taggaaagtt aaggcctctc 841 aacatcatca acatcctagc ttcatgtgat tggactttcg cgggcatagt ggagtccttg 901 atactcttgg cagagctctc tggagtcttc tggacacccc cagatgtgtc tgcgatgatc 961 gcccccttac tcggtgattt cgagttacaa ggacctgagg accttgtagt ggagctcgtc 1021 cctgtagtaa tgggggggat tggtttggtg ctaggattca ccaaagagaa gattggaaaa 1081 atgttgtcat ctgctgcatc caccttgaga gcttgcaaag atcttggtgc atatgggcta 1141 gagatcctaa agttagtcat gaagtggttc ttcccgaaga aagaggaggc aaatgaactg 1201 gctatggtga gatctatcga ggatgcagta ctggaccttg aggcaattga aaacaaccat 1261 atgaccacct tgctcaaaga taaagacagc ctggcaacct acatgagaac ccttgacctc 1321 gaggaagaga aagccaggaa actctcaacc aagtccgctt cacctgacat cgtgggcaca 1381 atcaacgccc ttctggcgag aatcgccgct gcacgctccc tggtgcaccg agcgaaggag 1441 gagctttcca gcagaccaag acctgtagtc ttgatgatat caggcagacc agggataggg 1501 aagacccacc ttgctaggga agtggctaag agaattgcag cctccctcac aggagaccag 1561 cgtgtaggcc tcatcccacg caatggcgtc gatcactggg atgcgtacaa gggggagagg 1621 gtcgtcctat gggacgacta tggaatgagc aaccccatcc acgacgccct caggctgcaa 1681 gaactcgctg acacttgccc cctcacccta aattgtgaca ggatcgagaa taaaggaaag 1741 gtctttgaca gcgatgtcat cattatcact actaatctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcgtg ctcgaggcgc atcgatttcc tcgtgtatgc ggaagccccc 1861 gaggtcgaaa aggcgaagcg tgacttcccg ggccaacctg acatgtggaa aaacgctttt 1921 agttctgatt tctcacacat aaaattggca ctggctccac aaggtggctt tgataagaac 1981 gggaacaccc cacacggaaa gggcgtcatg aagactctca ccactggctc cctcattgcc 2041 cgggcatcag ggctgctcca tgagagattg gatgagtttg aactacaggg cccagctctt 2101 accaccttca actttgatcg caacaaagtg cttgccttca ggcagcttgc tgctgaaaac 2161 aaatatgggt tgatagatac aatgaaagtt gggaggcagc tcaaggatgt cacaaccatg 2221 tcagaactta aacaagcact caagaatatc tcaatcaaga agtgccatat tgtgtacagt 2281 ggttgcactt acacacttga gtctgatggc aagggcaatg tgaaagttga cagagttcag 2341 agcacctccg tacagaccaa caatgagctg gctggcgccc tgcaccatct aaggtgcgcc 2401 agaatcaggt actatgtcaa gtgtgtccag gaggccctgt attctatcat ccagattgct 2461 ggggctgcat ttgtcaccac acgcatcatc aagcgtgtga acattcaaga cttgtggtcc 2521 aagccacaag tggaaaacac agaggaggcc gccaacaagg acgggtgccc aaaacccaaa 2581 gatgatgagg agttcgtcat ttcatccgac gacatcaaaa ctgagggtaa gaaagggaag 2641 aacaagactg gccgtggcaa gaagcacaca gccttctcaa gtaaaggtct cagtgatgaa 2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gtaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aacaaggaaa 2881 caacgcaagg aggaaagagc ttctctcggc ttagttacag gttctgaaat taggaaaaga 2941 aatccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagttt tgaagcccca ccaagcattt ggtcgaggat agtcaacttt 3061 ggttcaggtt ggggattctg ggtctccccc agtttgttca taacatcaac ccatgtcata 3121 ccccaggggg caaaggagtt ctttggaacc cccatcaaac aaattcaggt acataagtca 3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagga ctgacgtgac gggcatgatc 3241 ttagaagaag gtgcacccga gggcaccgtg gtcacactac tcatcaaaag gtccactgga 3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgagaat ccaaggacgc 3361 actgttggag gtcaaatggg catgcttctg acaggatcca acgccaaaag catggatctg 3421 ggtaccacac caggtgattg tggctgtccc tatatctaca agagaggaaa tgactatgtg 3481 gtcattggag tccacacggc tgccgctcgt gggggcaaca ctgtcatatg tgccacccag 3541 gggagtgagg gagaggctac acttgaaggt ggtgacaata aagggacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatca 3661 tccacaacac cactcccacc tggcacctat gaaccagctt atcttggtgg caaggacccc 3721 agagtcaagg gtggcccttc attgcagcag gtcatgaggg atcagctgaa gccattcaca 3781 gagcccaggg gcaagccacc aaagccaagt gtgttggaag ctgctaagaa aaccatcatc 3841 aatgtccttg agcaaacaat tgacccacct gagaaatggt cgttcgcaca agcttgcgcg 3901 tcccttgaca agaccacttc cagtggccat ccgcatcata tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggctaa cctgatgttt 4021 gaagaaggga agaacatgac gccagtctac acagctgcgc ttaaggatga attagttaaa 4081 actgacaaaa tttatggtaa gatcaagaag aggcttctct ggggctcgga cttggcgacc 4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg agctcaaaac gcactgtgtc 4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cactccaggt acacatacca ctatgatgct gattactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaagt tctccccaga accacatttg 4381 gcccaggtgg tcgcagaaga ccttctctct cctagcgtgg tggacgtggg tgacttcaca 4441 atatcaatta acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcaccct ctgtgcgctc tctgaagtta caaacttgtc tcctgacacc 4561 atacaagcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aaattggacc cagaaaagtt gacagcaaag ctcagggaat atgggttaaa gccaacccgc 4681 cccgacaaaa ctgaaggacc ccttgtcatc tctgaagact tgaatggcct gactttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata 4801 cttaggcaaa tgtactggac taggggttcc aaccatgaag acccatctga aacaatgatt 4861 ccacactccc aaaggcccat acaactgatg tccctactgg gggaggccgc actccacggc 4921 ccagcattct acagcaaaat cagcaagtta gtcattgcag agctaaaaga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg tttagatgga tgagattctc agacctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca cctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgtcg gtgccgctat tgcggcgcct gtggcgggcc aacaaaatgt 5221 aattgacccc tggattagaa ataattttgt gcaagcccct ggtggagagt tcacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atctgaatcc 5341 ctacctatct catttggcca gaatgtataa tggttatgca ggtggttttg aagtgcaggt 5401 gatcctcgcg gggaacgcgt tcaccgccgg aaaaattata tttgcagcag ttccaccaaa 5461 ttttccaact gaaggcttga gtcccagcca ggtcactatg ttcccccaca taatagtaga 5521 tgttaggcaa ttggaacctg tgttaatccc cttacctgat gttaggaata atttctatca 5581 ctataaccag tcaaatgatt ctaccattaa attgatagca atgctgtata caccacttag 5641 ggctaataat gctggggaag atgtcttcac agtctcttgt cgagtcctca cgaggccatc 5701 ccctgatttt gattttatat tcttggtgcc acctacagtt gagtcaagaa ctaaaccatt 5761 tactgtccca atcttaactg ttgaagaaat gaccaattca agattcccca ttcctttgga 5821 aaagttgttc acgggtccca gcggtgcctt tgttgttcaa ccacaaaatg gcagatgcac 5881 gactgatggc gtgctcttag gcaccaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccacattg caggttctcg tagctacaca atgaatttgg cttctctaaa 6001 ttggaacaat tatgacccaa cagaagaaat tccagcccct ctaggaactc cagatttcgt 6061 gggaaagatc caaggtatgc tcactcaaac cacaaaggga gatggctcga cccgtggcca 6121 taaagctaca gtttacactg ggagtgcccc ctttactcca aagctgggca gtgttcaatt 6181 cagtactgat acagaaaatg attttcaaac tcaccaaaac acaaaattca ccccagtcgg 6241 tgtcatccag gatggtagca ccacccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttattcaggt agagatgtcc ataatgtaca cctagcccct gctgtagccc ccactttccc 6361 gggtgaacaa cttcttttct tcaggtccac tatgcccgga tgcagcgggt atcccaacat 6421 ggatttggat tgcctactcc cccaggagtg ggtgcagcac ttctaccaag aggcggctcc 6481 agcacaatct gatgtggctc tattgagatt tgtgaatcca gacacgggta gggtcctgtt 6541 tgagtgcaaa cttcataaat caggctatgt cacagtggct cacaccggcc agcatgattt 6601 ggtcatcccc cccaatggct actttaggtt tgattcctgg gttaatcaat tctacacact 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcttta taatggctgg agctttcttt 6721 gctggattgg catctgatgt ccttggctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggctatca accaaaagat tgattttgaa aataacagaa aattgcagca agcttccttc 6841 cagtttagca gtaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccactaagaa gttgcaacag gaaatgatga aagtcaaaca ggcaatgctc 6961 ttagaaggtg gattttctga aacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaggctttgg actggagcgg aacaaggtac tgggcccctg atgctaggac cacaacatac 7081 aatgcaggcc gcttctccac ccctcaacct tcgggggcac tgccaggaag aatcaatccc 7141 aggattccta cccccgctcg gggctcctcc agcacatctt ctaatgcttc tactgctact 7201 tctatatact caaatcaaac tgtttcaacg agacttggtt ctacagctgc tggcaccaac 7261 gtctcgagtc tcccgtcaac tgcaaggact aggagttggg ttgaggatca aaacagaaat 7321 ttgtcacctt tcatgagggg ggctcacaac atatcgtttg tcaccccacc atctagcaga 7381 tcctctagtc aaggcacagt ctcaaccgtg cctaaagaag ttttggactc ctggactggc 7441 gctttcaaca cgcgcaggca gcctctctcg gctcacattc gtaggcgagg ggagtcacgg 7501 gtgtaa //