Typing tool
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Typing tool
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Complete norovirus genomes
| AB541267 | GII.4 Yerseke | |
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| GII.P4 Yerseke |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS AB541267 7509 bp RNA linear VRL 03-AUG-2010
DEFINITION Norovirus Hu/GII-4/Hokkaido5/2007/JP genomic RNA, complete genome.
ACCESSION AB541267
VERSION AB541267.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Hokkaido5/2007/JP
ORGANISM Norovirus Hu/GII-4/Hokkaido5/2007/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII-4/Hokkaido5/2007/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Hokkaido5/2007/JP"
/isolation_source="stool"
/db_xref="taxon:707450"
/country="Japan:Hokkaido"
CDS 1..5100
/note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13731.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIQQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREM
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKNTSIKRCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
PKPKDDGEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5081..6703
/codon_start=1
/product="VP1"
/protein_id="BAJ13732.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6703..7509
/codon_start=1
/product="VP2"
/protein_id="BAJ13733.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNFRAAVPAWGSSSTPS
NSSAATSVYSNQTASTRLGSTAGSGTSVSSLPSTAGTRSWVEGQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaaacagcc tcccccgagg gaaatacaac aaagaccccc ccgaccacct
181 actccagaat tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagtg
241 gtttcttata gtgtcaaaga tggtgtttcc ggtttgcctg acctttccac cgtcaggcaa
301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat
361 gctaaggaac cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccattagc
481 ctcgctaggg tcgagctagc accactctcc ttgtactgga gacctgtgta cactccccag
541 tacctcatct ctccagacac tctcaagaaa ttacacggag aaacgttccc ctacacagcc
601 tttgataaca attgttacgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg
661 agcaggagaa tgatccagag aacaactggt ttcttcaggc cctaccaaga ttggaatagg
721 aaaccccttc ccactatgga tgactccaaa ctaaagaagg tagctaacat attcctgtgt
781 gctctgtctt cgctattcac caggcccata aaagatataa tagggaagct aaggcctctt
841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggcatagt ggagtccctg
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac tcggtgacta cgagctacaa gggcctgagg accttgcagt ggagctcgtc
1021 cccgtagtga tgggggggat tggtttggtg ctaggattca ccaaagagaa gattgggaaa
1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag accttggtgc atatgggcta
1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aggaggaagc aaatgaattg
1201 gctatagtga gatctataga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac ccttgacctt
1321 gaggaggaga aagccaggaa gctctcaacc aagtctgcct cacctgacat cgtgggcaca
1381 atcaacgccc ttctggcgag aatcgctgct gcacgctctc tggtgcatcg agcgaaggag
1441 gaactttcca gcagaccaag acctgtagta ttgatgatat caggcagacc aggaataggg
1501 aagacccacc ttgctaggga aatggctaag agaatcgcag cctccctcac aggagaccag
1561 cgtgtaggcc tcgtcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgtcctat gggacgatta tgggatgagc aatcccattc acgatgccct caggttgcaa
1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag
1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc gccactggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct
1861 gaagtcgaga aggcgaagcg tgacttccca ggccaacctg acatgtggaa gaacgccttc
1921 agctctgatt tctcacacat aaaactaaca ttggccccac agggtggctt cgacaagaac
1981 gggaacaccc cacacggaag gggcgtcatg aagactctca ccactggctc ccttattgcc
2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aactacaggg cccaactctc
2101 actaccttca atttcgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaac
2161 aaatatgggt tgatggacac aatgagagtt gggagacagc tcaaggatgt cagaaccatg
2221 ccagaactca aacaagcact caagaacacc tcaatcaaga ggtgccagat agtgtatagt
2281 ggttgcacct acatacttga gtctgatggc aagggcaatg tgaaagttga cagagttcag
2341 agcgcctccg tgcagaccaa caatgagcta actggtgccc tgcaccattt gaggtgcgcc
2401 aggatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat ccaaattgct
2461 ggagctgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaga cctatggtcc
2521 aagccacaag tggaaaacac agaggagacc accagtaagg acgggtgccc aaaacccaaa
2581 gatgatgggg agtttgtcat ttcatccgac gacatcaaaa ctgagggtaa gaaagggaag
2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa
2701 gagtacgatg agtacaagag aattagagaa gaaaggaatg gcaagtactc catagaagag
2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa
2821 gacttctgtg aagaggagga ggccaagatc cgacaaagga tcttcaggcc aacaaggaaa
2881 caacgcaagg aggaaagagc ttctctcggt ctggtcacag gttctgaaat taggaaaaga
2941 aacccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac
3001 tataatgaga aactcagctt tgaggcccca ccaagcatct ggtcgaggat agtcaacttt
3061 ggctcaggtt ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata
3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaattcaggt ccacaagtca
3181 ggcgagtttt gtcgcttgag atttccaaaa ccaatcagga ctgatgtgac aggcatgatc
3241 ttagaagaag gcgcacccga gggcaccgtg gtcacactac tcatcaaaag atccactggg
3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc
3361 accgttggag gccaaatggg catgcttctg acaggatcca acgccaaaag catggatctg
3421 ggtactacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg
3481 gtcattggag tccacacggc tgccgctcgt gggggaaaca ctgtcatatg tgccacccag
3541 gggagtgagg gagaggctac acttgaaggt ggtgacaaca aggggacata ctgtggagca
3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg
3661 tccacggcat cactcccacc tggcacctat gaaccagcct atcttggtgg caaggaccct
3721 agagtcaagg gtggcccttc actgcagcaa gtcatgaggg aacagttgaa gccattcaca
3781 gagcccagag gcaagccacc aaagccaagt gtgttagaag ctgccaagaa gaccatcatt
3841 aatgtccttg agcaaacaat tgatccacct gagaagtggt cattcgcaca agcttgcgcg
3901 tcccttgaca agaccacctc cagtggccat ccgcaccata tgcggaaaaa cgactgctgg
3961 aacggggagt ccttcacagg caagctagca gaccaggcct ccaaggccaa tctgatgttt
4021 gaagaaggga agagcatgac cccagtctac acagctgcgc tcaaggatga attagttaaa
4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggctcgga cttggcgacc
4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc acactgtgtc
4201 acacttccca ttagagttgg tatgaacatg aatgaggatg gccccattat cttcgagagg
4261 cattccaggt acacatatca ctatgatgct gattactctc gatgggattc aacacaacaa
4321 agagccgtgt tggcggcagc tctagaaatc atggttaagt tctccccaga accacatttg
4381 gctcaggtag tcgcggaaga cctcctttct cctagcgtgg tggacgtggg cgacttcaca
4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc
4501 gcccactggc ttctcactct ctgtgcgctc tctgaagtta caaacttgtc ccctgatacc
4561 atacaggcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagatata
4621 aagttggacc cagagaaatt gacagcaaag ctcagggaat atgggttaaa accaacccgc
4681 cctgacaaga ctgagggacc ccttgtcatc tctgaagact tgaatggctt gactttcctg
4741 cggagaactg tgacccgcga cccagctggt tggtttggga aactggagca gagttcaata
4801 ctcaggcaaa tgtactggac taggggctcc aaccatgaag acccatctga aacaatgatt
4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc tcttcacggc
4921 ccagcattct acagcaaaat cagcaagtta gtcattgcag agctaaaaga aggtggcatg
4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat
5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt ttacagtatc
5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttgggccctg atttgaatcc
5341 ctacctttcc catttggcca gaatgtacaa tagttatgca ggtggttttg aagtgcaggt
5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccaccaaa
5461 ttttccaact gaaggtttga gccccagcca ggtcactatg ttcccccata taatagtaga
5521 tgttaggcaa ctggaacctg tgttgatccc cttacccgat gttaggaata atttctatca
5581 ttacaatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag
5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgggttctca cgagaccatc
5701 ccccgacttt gatttcatat ttttagtgcc acccacagtt gagtcaagaa ctaaaccatt
5761 ctctgtccca attttaactg ttgaggagat gaccaactca agattcccca ttcctttgga
5821 aaagttgttc acgggtccca gcagtgcctt tgtcgtccaa ccacaaaatg gcaggtgcac
5881 gactgacggc gtgctcctag gtactaccca actgtctcct gtcaacatct gcaccttcag
5941 aggggatgtc acccacattg cgggtactca agaatacaca atgaatctgg cctcccaaaa
6001 ctggaacaat tatgacccaa cagaagagat cccagcccct ctgggaactc cagatttcgt
6061 gggtaagatc caaggcgtgc tcacccaaac cacaaggagg gatggctcga cccgcggtca
6121 caaagccaca gtgagcactg gaagtgtcca cttcacccca aagctgggca gaattcaatt
6181 ctccactgat acaagcaatg actttgaaac tggccaaaac acgagattca ccccagtcgg
6241 tgttgtccag gatggtagta ccacccacca aaatgaaccc caacaatggg tacttccaaa
6301 ttattcaggt agagatagtc acaatgtgca cttagccccc gccgtggccc cctcttttcc
6361 gggtgagcaa cttcttttct tcaggtccac tatgcccgga tgcagcgggt atcccaacat
6421 gaatctggat tgcctactcc cccaggagtg ggtgcagcac ttctaccaag aggcagcccc
6481 agcacaatct gacgtggctc tactaagatt tgtgaatcca gacacaggta gggttctgtt
6541 tgagtgtaag cttcataaat caggctatgt cacagtggct cacactggcc aacatgattt
6601 agttatcccc cccaatggct attttagatt tgattcctgg gtcaaccagt tctacacact
6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcatta taatggctgg agctttcttt
6721 gctggattgg catctgatgt ccttggctct ggacttggtt ccctaatcaa tgctggggct
6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
6841 caatttagca gcaacctaca acaggcttcc tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga aagttaaaca ggcaatgctc
6961 ctagagggtg ggttctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca
7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac tacaacatac
7081 aatgcaggcc gcttttccac cccacaaccc tcgggggcac tgccaggaag aactaatttt
7141 agggctgctg tccccgcctg gggctcctct agtacacctt ctaactcttc tgctgctact
7201 tctgtgtact caaatcaaac tgcttcaacg agacttggtt ctacagctgg ttctggtacc
7261 agtgtctcga gcctcccgtc aactgcagga actaggagct gggtcgaggg tcaaaatagg
7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc
7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact
7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca
7501 cgggcgtga
//