Typing tool
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Typing tool
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Complete norovirus genomes
| AB541221 | GII.4 Den Haag | |
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| GII.P4 Hunter |
ORF1: 1..4995
ORF2: 4976..6598
ORF3: 6598..7404
LOCUS AB541221 7404 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GII-4/Aomori2/2008/JP genomic RNA, nearly complete
genome.
ACCESSION AB541221
VERSION AB541221.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Aomori2/2008/JP
ORGANISM Norovirus Hu/GII-4/Aomori2/2008/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7404)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7404
/organism="Norovirus Hu/GII-4/Aomori2/2008/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Aomori2/2008/JP"
/isolation_source="stool"
/db_xref="taxon:707404"
/country="Japan:Aomori"
CDS <1..4995
/note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13593.1"
/translation="FKRALGTRPKQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDI
VVSYSVKDGVSGLPDLSTVRQPEESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEI
YHYGLYVERGLVLGVHKPPAAISLARVELTPLSLYWRPVYTPQYLISPDALKKLHGET
FPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKK
VANIFLCALSSLFTRPIKDIIGKLRPLNILNILASCDWTFAGIVESLILLAELFGVFW
TPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTL
RACKDLGAYGLEILKLVMKWFFPKKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKD
KDSLATYMRTLDLEEEKARRLSTKSASPDIVGTINALLARIAAARSLVHRAKEELSSR
PRPVVLMISGRPGIGKTHLAREVAKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVL
WDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDY
VNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDK
NGNTPHGKGVMKTLTTGSLIARASGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLA
AENKYGLMDTMKVGRQLKDVRTMPELKQALKNISIKKCQIVYSGSTYTLESDGKGNVK
VDRVQSASVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRM
NIQNLWSKPQVENTEETTSKDGCPKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTA
FSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAK
IRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSF
EAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFFGTPIKQIQVHKSGEFCR
LRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRSTGELMPLAARMGTHATMRIQGRTVG
GQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQG
SEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKD
PRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQ
ACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPVYTAALK
DELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHCVTLPIRVGMNMNED
GPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSP
SVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSF
YGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRD
PAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYS
KISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 4976..6598
/codon_start=1
/product="VP1"
/protein_id="BAJ13594.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRDVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6598..7404
/codon_start=1
/product="VP2"
/protein_id="BAJ13595.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPGIPTPARGSSSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 tttaaacgag ccctcgggac gcggcctaaa cagcctcccc cgagggaaat accacaaaga
61 cccccacgac cacccactcc agaactaatc aaaaacatcc cccctccccc acccaacgga
121 gaggatgaca tagtggtttc ttatagtgtt aaagatggtg tctctggttt gcctgatctt
181 tccaccgtca ggcaaccgga agaatctaac acggccttca gtgtccctcc actcaatcag
241 agggagaata gagatgctaa ggaaccactg actggaacaa ttctggaaat gtgggatgga
301 gaaatctacc attatggcct gtatgtggag cgaggtcttg tactaggtgt gcacaaacca
361 ccagctgcca tcagcctcgc tagggtcgaa ctaacaccac tctccttgta ctggagacct
421 gtgtatactc cccagtacct catctctcca gacgctctca agaaactaca cggagagacg
481 ttcccctaca cagcctttga caacaactgc tatgcctttt gttgttgggt cctggaccta
541 aacgactcgt ggctgagtag gagaatgatc cagagaacaa ctggcttctt cagaccctac
601 caagattgga ataggaaacc cctccccact atggatgact ccaagttaaa gaaggtagct
661 aacatattcc tgtgtgcact gtcttcgcta ttcaccaggc ctataaaaga cataataggg
721 aagctaaggc ctcttaacat cctcaacatc ttggcctcat gtgattggac ttttgcgggc
781 atagtggagt ccttgatact cttggcagaa ctctttggag ttttctggac acccccagat
841 gtgtctgcga tgattgcccc cttactcggt gattacgagc tacaagggcc tgaggacctt
901 gcagtggagc tcgtccctgt agtgatgggg ggaattggtt tggtgctagg attcaccaaa
961 gagaagattg gaaaaatgtt gtcatctgct gcatccacct tgagagcttg taaagatctt
1021 ggtgcatatg ggctagagat cctaaagttg gtcatgaagt ggttcttccc gaagaaagag
1081 gaagcaaatg aactggctat agtgagatcc atcgaggatg cagtcctgga tctcgaggca
1141 attgaaaaca accatatgac caccttgctc aaagacaaag atagtctagc aacctacatg
1201 agaacccttg accttgagga ggagaaagcc aggagactct caaccaagtc tgcttcacct
1261 gacatcgtgg gcacaatcaa cgcccttctg gcgagaatcg ctgctgcacg ttctctggtg
1321 catcgagcga aggaggaact ttctagcaga ccaagacctg tagtgttgat gatatcaggc
1381 agaccaggaa tagggaagac ccaccttgct agggaagtgg ctaagagaat cgcagcctcc
1441 cttacaggag accagcgtgt aggcctcgtc ccacgcaatg gcgtcgacca ttgggatgcg
1501 tacaaggggg agagggtcgt cctatgggac gactatggaa tgagcaatcc tatccacgat
1561 gccctcaggt tacaagaact cgctgacact tgccccctca ccttaaactg tgacaggatt
1621 gagaacaaag gaaaggtctt tgacagcgat gtcatcatta tcaccactaa tctggctaac
1681 ccagcaccac tggactatgt caactttgaa gcatgctcga ggcgcatcga cttcctcgtg
1741 tatgcagaag cccctgaggt cgaaaaggca aagcgtgact tcccaggcca acccgacatg
1801 tggaagaacg ccttcagttc tgatttctca cacataaaac taacattggc tccacagggt
1861 ggtttcgaca agaacgggaa caccccacac ggaaagggcg tcatgaagac tctcaccacc
1921 ggctccctta ttgcccgggc atcagggcta ctccatgaga ggctagatga atttgaacta
1981 cagggcccaa ctctcaccac cttcaacttt gatcgcaata aagtgctcgc ctttagacaa
2041 cttgctgctg aaaacaaata tgggttgatg gacacaatga aagttgggag gcagctcaag
2101 gatgtcagaa caatgccaga gcttaagcaa gcactcaaga atatctcaat caagaagtgc
2161 cagatagtgt atagtggtag cacctacaca cttgagtctg atggcaaggg caatgtgaaa
2221 gttgacaggg ttcaaagcgc ctccgtgcag accaacaatg agctggctgg cgccctacac
2281 catctaaggt gcgccagaat aagatactat gtcaagtgtg tccaggaggc cctgtattcc
2341 atcatccaga ttgctggggc tgcatttgtc accacgcgca tcgtcaagcg catgaacata
2401 caaaacctat ggtccaagcc acaagtggaa aacacagagg agactaccag caaggacggg
2461 tgtccaaaac ccaaagatga tgaggagttc gtcatttcat ccgacgacat caaaactgag
2521 ggtaagaaag ggaaaaacaa gactggccgc ggcaagaagc acacagcctt ctcaagcaaa
2581 ggtctcagtg atgaagagta cgatgagtac aagaggatta gagaagaaag gaatggtaag
2641 tactccatag aagagtacct tcaggacagg gacaaatact atgaggaggt ggccattgcc
2701 agggcgactg aggaagactt ctgtgaagag gaggaggcca agatccggca aaggatcttc
2761 aggccaacaa ggaaacaacg caaggaggaa agagcttctc tcggtttagt tacaggttct
2821 gaaattagaa aaagaaatcc agatgatttc aaacccaagg ggaaactgtg ggctgacgat
2881 gacagaagtg tggactacaa tgagaaactc agttttgaag ccccaccaag catttggtcg
2941 aggatagtca actttggttc aggttgggga ttctgggtct cccccagttt gttcataaca
3001 tcaacccatg tcatacccca gggggcaaag gagttctttg gaacccccat caaacaaatt
3061 caggtacata agtcaggcga attctgtcgc ttgagattcc caaaaccaat caggactgac
3121 gtgacgggca tgatcttaga agaaggtgca cccgagggca ccgtggtcac actactcatc
3181 aaaaggtcca ctggagaact catgccccta gcagctagga tggggaccca tgcaaccatg
3241 agaatccaag gacgcactgt tggaggtcaa atgggcatgc ttctgacagg atccaacgcc
3301 aaaagcatgg atctgggtac cacaccaggt gattgtggct gtccctatat ctacaagaga
3361 ggaaatgact atgtggtcat tggagtccac acggctgccg ctcgtggggg caacactgtc
3421 atatgtgcca cccaggggag tgagggagag gctacacttg aaggtggtga caataaaggg
3481 acatactgtg gtgcaccaat cctaggccca gggagtgccc caaaacttag caccaagacc
3541 aaattctgga gatcatccac aacaccactc ccacctggca cctatgaacc agcttatctt
3601 ggtggcaagg accccagagt caagggtggc ccttcattgc agcaggtcat gagggatcag
3661 ctgaagccat tcacagagcc caggggcaag ccaccaaagc caagtgtgtt ggaagctgct
3721 aagaaaacca tcatcaatgt ccttgagcaa acaattgatc cacctgagaa atggtcgttc
3781 gcacaagctt gcgcgtccct tgacaagacc acctccagtg gccatccgca tcatatgcga
3841 aaaaacgact gctggaacgg ggagtccttc acaggcaagc tggcagacca ggcttccaag
3901 gctaacctga tgtttgaaga agggaagaac atgacgccag tctacacagc tgcgcttaag
3961 gatgaattag ttaaaactga caaaatttat ggtaagatca agaagaggct tctctggggc
4021 tcggacttgg cgaccatgat ccggtgtgct cgggcattcg gaggcctaat ggatgagctc
4081 aaaacgcact gtgtcacact tcccattaga gttggtatga atatgaatga ggatggcccc
4141 atcatcttcg agaggcactc caggtacaca taccactatg atgctgatta ctctcgatgg
4201 gattcaacac aacagagagc cgtgttggca gcagctctag aaatcatggt taagttctcc
4261 ccagaaccac atttggccca ggtagtcgca gaagaccttc tctctcctag cgtggtggac
4321 gtgggtgact tcacaatatc aattaacgag ggtcttccct ctggggtgcc ctgcacctcc
4381 caatggaact ccatcgccca ctggcttctc accctctgtg cgctctctga agttacaaac
4441 ttgtctcctg acaccataca agctaattcc ctcttctctt tttatggtga tgatgaaatt
4501 gttagcacag acataaaatt ggacccagaa aagttgacag caaagctcag ggaatatggg
4561 ttaaagccaa cccgccccga caaaactgaa ggaccccttg tcatctctga agacctgaat
4621 ggcctgactt tcctgcggag aactgtgacc cgcgacccag ctggttggtt tggaaaactg
4681 gagcagagtt caatactcag gcaaatgtac tggactaggg gttccaacca tgaagaccca
4741 tctgaaacaa tgattccaca ctcccaaagg cccatacagc tgatgtccct actgggggag
4801 gccgcactcc acggcccagc attctacagc aaaatcagca agttagtcat tgcagagcta
4861 aaagaaggtg gcatggattt ttacgtgccc agacaagagc caatgtttag atggatgaga
4921 ttctcagacc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa
4981 gatggcgtcg agtgacgcca acccatctga tgggtccgca gccaacctcg tcccagaggt
5041 caacaatgag gttatggctt tggagcccgt tgtcggtgcc gctattgcgg cgcctgtggc
5101 gggccaacaa aatgtaattg acccctggat tagaaataat tttgtacaag cccctggtgg
5161 agagttcaca gtatccccta gaaacgctcc aggtgaaata ctatggagcg cgcccttagg
5221 ccctgatctg aatccctacc tatctcattt ggccagaatg tataatggtt atgcaggtgg
5281 ttttgaagtg caggtgatcc tcgcggggaa cgcgttcacc gccggaaaaa ttatatttgc
5341 agcagttcca ccaaattttc caactgaagg cttgagtccc agccaggtca ctatgttccc
5401 ccacataata gtagatgtta ggcaattgga acctgtgtta attcccttac ctgatgttag
5461 gaataatttc tatcactata accagtcaaa tgattctacc attaaattga tagcaatgct
5521 gtatacacca cttagggcta ataatgctgg ggaagatgtc ttcacagtct cttgtcgagt
5581 cctcacgagg ccatcccctg attttgattt tatattcttg gtgccaccta cagttgagtc
5641 gagaactaaa ccatttactg tcccaatctt aactgttgaa gaaatgacca attcaagatt
5701 ccccattcct ttggaaaagt tgttcacggg tcccagcggt gcctttgttg ttcaaccaca
5761 aaatggcaga tgcacgactg atggcgtgct cttaggcacc acccaactgt ctcctgtcaa
5821 catctgcacc ttcagagggg atgtcaccca cattgcaggt tctcgtaact acacaatgaa
5881 tttggcttct ctaaattgga acaattatga cccaacagaa gaaattccag cccctctagg
5941 aactccagat ttcgtgggaa agatccaagg tatgctcact caaaccacaa agggagatgg
6001 ctcgacccgt ggccataaag ctacagttta cactgggagt gcccccttta ctccaaagct
6061 gggcagtgtt caattcagta ctgatacaga aaatgatttt gaaactcacc aaaacacaaa
6121 attcaccccg gtcggtgtca tccaggatgg tagcaccacc caccgaaatg aaccccaaca
6181 atgggtgctc ccaagttatt caggtagaga tgtccataat gtacacctag cccctgctgt
6241 agcccccact ttcccgggtg aacaacttct tttcttcagg tccactatgc ccggatgcag
6301 tgggtatccc aacatggatt tggattgcct actcccccag gagtgggtgc agcacttcta
6361 ccaagaggcg gctccagcac aatctgatgt ggctctattg agatttgtga atccagacac
6421 gggtagggtc ctgtttgagt gcaaacttca taaatcaggc tatgtcacag tggctcacac
6481 cggccagcat gatttggtca tcccccccaa tggctacttt aggtttgatt cctgggttaa
6541 tcaattctac acacttgccc ccatgggaaa tggaacgggg cgtagacgtg ctttataatg
6601 gctggagctt tctttgctgg attggcatct gatgtccttg gctctggact tggttcccta
6661 atcaatgctg gggctggggc tatcaaccaa aagattgatt ttgaaaacaa cagaaaattg
6721 cagcaagctt ccttccagtt tagcagtaat ctacaacagg cttcctttca acatgataaa
6781 gagatgctcc aagcacaaat tgaggccact aagaagttgc aacaggaaat gatgaaagtc
6841 aaacaggcaa tgctcttaga aggtggattt tctgaaacag atgcagcccg tggggcaatc
6901 aacgccccca tgacaaaggc tttggactgg agcggaacaa ggtactgggc ccctgatgct
6961 aggaccacaa catacaatgc aggccgcttc tccacccctc aaccttcggg ggcactgcca
7021 ggaagaatca atcccgggat tcctaccccc gctcggggct cctccagcac atcttctaat
7081 gcttctactg ctacttctat atactcaaat caaactgttt caacgagact tggttctaca
7141 gctggttctg gcaccaacgt ctcgagtctc ccgtcaactg caaggactag gagttgggtt
7201 gaggatcaaa acagaaattt gtcacctttc atgagggggg ctcacaacat atcgtttgtc
7261 accccaccat ctagcagatc ctctagtcaa ggcacagtct caaccgtgcc taaagaagtt
7321 ttggactcct ggactggcgc tttcaacacg cgcaggcagc ctctcttcgc tcacattcgt
7381 aggcgagggg agtcacgggt gtaa
//