Typing tool
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Typing tool
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Complete norovirus genomes
| AB541212 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..4995
ORF2: 4976..6598
ORF3: 6598..7404
LOCUS AB541212 7404 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GII-4/Akita1/2008/JP genomic RNA, nearly complete
genome.
ACCESSION AB541212
VERSION AB541212.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Akita1/2008/JP
ORGANISM Norovirus Hu/GII-4/Akita1/2008/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7404)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7404
/organism="Norovirus Hu/GII-4/Akita1/2008/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Akita1/2008/JP"
/isolation_source="stool"
/db_xref="taxon:707395"
/country="Japan:Akita"
CDS <1..4995
/note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13566.1"
/translation="FKRALGARPKQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEV
VVSYSAKDGVSGLPELSTVRQPEETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEI
YHYGLYVERGLVLGVHKPPAAISLAKVELTPLSLFWRPVYTPQYLISPDTLKRLHGET
FPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKK
VANIFLCALSSLFTRPIKDIIGKLRPLNIINILASCDWTFAGIVESLILLAELFGVFW
TPPDVSAMIAPLLGDFELQGPEDLVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTL
RACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKD
KDSLATYMRTLDLEEEKARKLSTRSASPDIVGTINALLARIAAARSLVHRAKEELSSR
PRPVVMMISGRPGIGKTHLAREVAKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVL
WDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDY
VNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDK
NGNTPHGKGVMKTLTTGSLIARASGLLHERLDEFELQGPSLTTFNFDRNKVLAFRQLA
AENKYGLMDTMKVGRQLKDVKTMPELKQALKNISIKKCQIVYSGCTYTLESDGKGNVE
VDRVQSTSVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRV
NIQDLWSKPQVENTEEATNKDGCPKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTA
FSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAK
IRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSF
EAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCR
LRFPKPIRTDVAGMILEEGAPEGTVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVG
GQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQG
GEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKD
PRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQ
ACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPVYTGALK
DELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNED
GPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSP
SVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSF
YGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRD
PAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYS
KISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 4976..6598
/codon_start=1
/product="VP1"
/protein_id="BAJ13567.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRDYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVRFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRDVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKPGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6598..7404
/codon_start=1
/product="VP2"
/protein_id="BAJ13568.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSSSISS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKGVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 tttaaacgag ccctcggggc gcggcctaaa cagccccccc cgagggaaat accacaaaga
61 cccccacgac cacctactcc agaactggtc aaaaagatcc ctcctccccc gcccaacgga
121 gaggatgaag tagtggtttc ttatagtgcc aaagatggcg tttccggttt acctgagctt
181 tccaccgtca ggcaaccgga agaaaccaat acggccttca gtgtccctcc actcaatcag
241 agggagaata gggatgctaa ggaaccactg actggaacaa ttctggaaat gtgggatgga
301 gaaatctacc attatggcct gtatgttgag cgaggtcttg tgctgggtgt gcacaaacca
361 ccagctgcca ttagtctcgc caaggtcgaa ctaaccccac tctccttgtt ctggagacct
421 gtgtacactc ctcagtacct catctctcca gacactctca agagattaca cggagaaaca
481 ttcccctaca cagcctttga caacaattgc tatgcctttt gttgctgggt cctggatcta
541 aacgactcgt ggctgagtag gagaatgatc cagagaacaa ctggcttctt cagaccctac
601 caagattgga ataggaaacc cctccccact atggatgatt ccaaattaaa gaaggtagct
661 aacatattcc tgtgtgccct gtcttcgcta ttcaccaggc ccataaaaga cataatagga
721 aagttaaggc ctctcaacat catcaacatc ctggcttcat gtgattggac tttcgcaggc
781 atagtggagt ccttgatact cttggcagag ctctttggag tcttctggac acccccagat
841 gtgtctgcga tgattgcccc cttactcggt gatttcgagt tacaaggacc tgaggacctt
901 gtagtggagc tcgtccctgt agtaatgggg ggaattggtt tggtgctagg attcaccaaa
961 gagaagattg gaaaaatgtt gtcatctgct gcatccacct tgagagcttg taaggatctt
1021 ggtgcatatg ggctagagat cctaaagttg gttatgaagt ggttcttccc gaagaaagag
1081 gaggcaaatg aactggctat ggtgagatcc atcgaggatg cagtgctgga ccttgaggca
1141 attgaaaaca accatatgac caccttgctc aaagacaaag acagcctggc aacctacatg
1201 agaacccttg acctcgagga agagaaagcc agaaaactct caaccaggtc tgcttcacct
1261 gacatcgtgg gcacaatcaa cgccctcctg gcgagaatcg ccgctgcacg ctccctggtg
1321 caccgagcga aggaggagct ttccagcaga ccaagacctg tagtcatgat gatatcaggc
1381 agaccaggga tagggaagac ccaccttgct agggaagtgg ctaagagaat cgcagcctcc
1441 ctcacaggag accagcgtgt aggcctcatc ccacgcaatg gcgtcgatca ctgggatgcg
1501 tacaaggggg agagggttgt cctatgggac gactatggaa tgagcaaccc catccacgac
1561 gccctcaggc tgcaagaact cgctgacacc tgccccctca ctctaaattg tgacaggatt
1621 gagaataaag gaaaggtctt tgacagcgat gtcatcatta tcactactaa tctggccaac
1681 ccagcaccac tggactatgt caactttgaa gcgtgctcga ggcgcatcga tttcctcgtg
1741 tatgcagaag cccccgaggt cgaaaaggcg aagcgtgact tcccgggcca acctgacatg
1801 tggaaaaacg ctttcagttc tgatttctca cacataaaat tggcactggc tccacaaggt
1861 ggctttgata agaacgggaa caccccgcac gggaagggcg tcatgaagac tctcaccact
1921 ggctccctca ttgcccgggc atcagggctg ctccatgaga gattggatga gtttgaacta
1981 cagggcccat ctcttaccac cttcaacttt gaccgcaaca aagtgcttgc cttcaggcag
2041 cttgctgctg aaaacaaata tgggttgatg gacacaatga aagttgggag gcagctcaag
2101 gatgtcaaaa ccatgccaga acttaaacaa gcactcaaga acatctcaat caagaagtgc
2161 cagattgtgt atagtggttg cacctacaca cttgagtctg atggcaaggg caatgtggaa
2221 gttgacagag ttcagagcac ctccgtacaa accaacaatg agctggctgg cgccctgcac
2281 catctaaggt gcgccagaat caggtactat gtcaagtgtg tccaggaggc cctgtattct
2341 atcatacaga ttgctggggc tgcatttgtc accacgcgca taatcaagcg tgtgaacatt
2401 caagacttgt ggtccaagcc acaagtggaa aacacagagg aggctaccaa caaggacggg
2461 tgcccaaaac ccaaagatga tgaggagttc gtcatttcat ctgacgacat taaaactgag
2521 ggtaagaaag ggaagaacaa gactggccgt ggcaagaagc acacagcctt ctcaagtaaa
2581 ggtctcagtg atgaagagta tgatgagtac aagagaatta gagaggaaag gaatggcaag
2641 tactccatag aagagtacct tcaggacagg gacaaatact atgaggaggt ggccattgcc
2701 agggcgaccg aggaagactt ctgtgaagag gaggaggcca agatccggca aaggatcttc
2761 aggccaacaa ggaaacaacg caaggaagaa agagcttctc tcggtttagt cacaggttct
2821 gaaattagga aaagaaaccc agaagacttc aagcccaagg ggaaactatg ggctgacgat
2881 gacagaagtg tggactacaa tgagaaactc agttttgagg ccccaccaag catctggtca
2941 aggatagtca actttggctc aggttggggc ttctgggtct cccccagcct gttcataaca
3001 tcaacccacg tcatacccca gggcgcaaag gagttctttg gagttcccat caaacaaatt
3061 caggtacaca agtcaggcga attctgtcgc ttgaggttcc caaaaccaat taggactgat
3121 gtggctggca tgatcttgga agaaggtgcg cccgaaggca ccgtggtcac actactcatc
3181 aaaaggtcta ctggagaact catgccccta gcagctagaa tggggaccca tgcaaccatg
3241 aaaattcaag ggcgcactgt tggaggtcag atgggcatgc ttctgacagg atccaacgcc
3301 aaaagcatgg atctaggcac cacgccaggt gattgcggct gtccctacat ctacaagaga
3361 ggaaatgact atgtggtcat tggagtccac acggctgccg ctcgtggggg aaacactgtc
3421 atatgtgcca cccagggggg tgagggggaa gctacacttg aaggtggtga cagtaaggga
3481 acgtactgtg gtgcaccaat cctaggccca gggagtgccc caaaacttag caccaaaacc
3541 aaattctgga gatcgtccac agcaccactc ccacctggca cctatgaacc agcctacctt
3601 ggtggcaagg accccagagt caagggtggc ccctcgttgc agcaagtcat gagggaccag
3661 ctgaaaccat ttacagagcc caggggtaag ccaccaaagc caagtgtgtt agaagctgcc
3721 aagaaaacca tcatcaacgt ccttgaacaa acaattgacc cacctgagaa gtggtcgttc
3781 gcacaagctt gcgcgtccct tgacaagacc acttctagcg gccatccgca ccacatgcgg
3841 aaaaacgact gctggaacgg ggaatccttc acaggcaaac tggcagacca ggcttccaag
3901 gccaacctga tgtttgaaga agggaagaac atgaccccag tctacacagg tgcacttaag
3961 gatgaattag tcaaaactga caaaatttat ggtaagatca agaagaggct tctctggggc
4021 tcggatttag caaccatgat ccggtgtgca cgagcattcg gaggcctaat ggatgaactc
4081 aaagcacact gtgtcacact tcctatcaga gttggtatga atatgaatga ggatggcccc
4141 atcatcttcg agaagcattc taggtacaga taccactatg atgctgatta ctctcggtgg
4201 gattcaacac aacagagagc cgtgctggca gctgctctag aaatcatggt taaattctcc
4261 tcagaaccac atttggctca ggtagtcgca gaagaccttc tttctcctag cgtggtggat
4321 gtgggtgact tcacaatatc aatcaacgag ggtcttccct ctggagtgcc ctgcacctcc
4381 caatggaact ccatcgccca ctggcttctc actctctgtg cactctccga agttacaaat
4441 ttgtccccag acatcataca ggctaattct ctcttctcct tctatggtga tgatgaaatt
4501 gttagtacag acataaaatt agacccagag aagttgacag caaagcttaa ggagtatggg
4561 ttgaaaccaa cccgccctga taaaactgaa ggacctcttg ttatttctga agacttagat
4621 ggtttgactt tcctgcggag aactgtgacc cgcgacccag ctggttggtt tggaaaactg
4681 gagcagagct caatactcag gcaaatgtac tggactaggg gccccaacca tgaagatcca
4741 tctgaatcaa tgattccaca ctctcaaaga cccatacaat tgatgtcctt actgggagag
4801 gccgcactcc acggcccaac attctacagt aaaatcagca aattagtcat tgcagagcta
4861 aaagaaggtg gtatggattt ttacgtgccc aggcaagagc caatgttcag atggatgaga
4921 ttctcagatc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa
4981 gatggcgtcg aatgacgcca acccatctga tgggtccgca gccaacctcg tcccagaggt
5041 caacaatgag gttatggctc tggagcccgt tgtcggtgcc gctattgcgg cacctgtagc
5101 gggccaacaa aatgtaattg acccctggat tagaaataat tttgtacaag cccctggtgg
5161 agagttcaca gtatctccta gaaacgctcc aggtgaaata ctatggagcg cgcccttagg
5221 ccctgatctg aatccctacc tatctcattt ggccagaatg tataatggtt atgcaggtgg
5281 ttttgaagtg caggtgatcc tcgcggggaa cgcgttcacc gccggaaaaa ttatatttgc
5341 agcagtccca ccaaattttc caactgaagg cttgagtccc agccaggtca ctatgttccc
5401 ccatataata gtagatgtta ggcaattgga acctgtgttg atccccttac ctgatgttag
5461 gaataacttc tatcactata atcagtcaaa tgattctact attaaattga tagcaatgct
5521 gtacacacca cttagggcta ataatgctgg ggaagatgtc ttcacagtct cttgtcgagt
5581 cctcacgagg ccatcccctg attttgattt tatatttttg gtgccaccta cagttgagtc
5641 aagaactaaa ccatttactg tcccaatctt aactgttgaa gaaatgacca attcaagatt
5701 ccccattcct ttggaaaagt tgttcacggg tcccagcagt gcctttgttg ttcaaccaca
5761 aaatggcaga tgcacgactg atggcgtgct cttaggcacc acccaactgt ctcctgtcaa
5821 catctgcacc ttcagagggg acgtcaccca cattgcaggc tctcgtgatt acacaatgaa
5881 tttggcttct ctaaattgga acaattacga cccaacagaa gaaattccag cccctctagg
5941 aactccggat ttcgtgggaa agattcaagg tgtgctcact caaaccacaa agggggatgg
6001 ctcgacccgt ggccataaag ctacagttta cactgggagt gcccccttta ctccaaagct
6061 gggcagtgtt cgattcagta ctgatacaga aaatgatttt gaaactcacc aaaacacaaa
6121 attcacccca gtcggtgtca tccaggacgg tagtaccacc caccgaaatg aaccccaaca
6181 atgggtgctc ccaagttatt caggtagaga tgtccataat gtacacctag cccctgctgt
6241 agcccccact tttccgggtg aacaacttct tttcttcagg tccactatgc ccggatgcag
6301 tgggtatccc aacatggatt tggattgcct actcccccag gagtgggtgc agcacttcta
6361 ccaagaggca gctccagcac aatctgatgt ggctctattg agatttgtga atccagacac
6421 gggtagggtc ctgtttgagt gcaaacttca taaaccaggc tatgtcacag tggctcacac
6481 cggccagcat gatttggtca tcccccccaa tggctatttt aggtttgatt cctgggttaa
6541 tcaattctac acacttgccc ccatgggaaa tggaacgggg cgtagacgtg ctttataatg
6601 gctggagctt tctttgctgg attggcatct gatgtccttg gctctggact tggttcccta
6661 atcaatgctg gggctggggc tatcaaccaa aagattgatt ttgaaaataa cagaaaattg
6721 cagcaagctt ccttccagtt tagcagtaat ctacaacagg cttcctttca acatgataaa
6781 gagatgctcc aggcacaaat tgaggccact aaaaagttgc aacaggaaat gatgaaagtc
6841 aaacaggcaa tgctcttaga aggtggattc tctgaaacag atgcagcccg tggggcaatc
6901 aacgccccca tgacaaaggc tttggactgg agcggaacaa gatactgggc ccctgatgct
6961 aggactacaa catacaatgc aggccgcttt tccacccctc aaccttcggg ggcactgcca
7021 ggaagaatca atcccaggac tcctaccccc gctcgaggct cctccagcat atcttctaat
7081 gcttctactg ctacttctat atattcaaat caaactgttt caacgagact tggttctaca
7141 gctggttctg gcaccaatgt ctcgagtctc ccgtcaactg caaggactag gagttgggtt
7201 gaggatcaaa acagaaactt gtcacctttc atgagggggg ctcacaacat atcgtttgtc
7261 accccaccat ctagcagatc ctctagccaa ggcacagtct caaccgtgcc taaaggagtt
7321 ttggactcct ggactggcgc tttcaacacg cgcaggcagc ctctcttcgc tcacattcgt
7381 aggcgagggg agtcacgggt gtaa
//