Typing tool
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Typing tool
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Complete norovirus genomes
| AB541202 | GII.4 New Orleans | |
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| GII.P4 Hunter |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS AB541202 7509 bp RNA linear VRL 03-AUG-2010
DEFINITION Norovirus Hu/GII-4/Aichi1/2008/JP genomic RNA, complete genome.
ACCESSION AB541202
VERSION AB541202.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Aichi1/2008/JP
ORGANISM Norovirus Hu/GII-4/Aichi1/2008/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII-4/Aichi1/2008/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Aichi1/2008/JP"
/isolation_source="stool"
/db_xref="taxon:707385"
/country="Japan:Aichi"
CDS 1..5100
/note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13536.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELAPLSLYWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5081..6703
/codon_start=1
/product="VP1"
/protein_id="BAJ13537.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNNHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6703..7509
/codon_start=1
/product="VP2"
/protein_id="BAJ13538.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQLSGALPGRANLRAAVPARGSSSTSS
NSSTVTSVYSNQTTSTRLGSTAGSGTSVSSFPSTARARSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcactttcaa acgagccctc
121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccaccc
181 actccagaac tgattaaaaa catcccccct cccccaccca acggagagga tgacatagtg
241 gtttcttata gtgtcaaaga tggtgtctct ggtttgcctg atctttccac cgtcaggcaa
301 ccggaagaat ctaatacggc cttcagtgtc cctccactca atcagaggga gaatagagat
361 gctaaggagc cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg tagagcgagg tcttgtgcta ggtgtgcaca aaccaccagc tgccatcagc
481 ctcgctaggg tcgaactagc accactttcc ttgtactgga gacctgtgta cactccccag
541 tacctcatct ctccagacgc tctcaagaaa ctacacggag agacgttccc ctacacagcc
601 tttgacaaca actgctatgc cttttgttgt tgggtcctgg acctaaacga ctcgtggctg
661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg
721 aaacccctcc ccactatgga tgactccaag ttaaagaagg tagctaacat attcctgtgt
781 gcactgtctt cgctattcac caggcctata aaggatataa tagggaagct aaggcctctt
841 aacatcctca acatcttggc ctcatgtgat tggacttttg caggcatagt ggagtccttg
901 atactcttgg cagaactctt cggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac tcggtgatta cgagctacaa ggacctgagg accttgcagt agagctcgtc
1021 cctgtagtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattggaaaa
1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag atcttggtgc atatgggcta
1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aagaggaagc aaatgaactg
1201 gctatagtga gatccatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac ccttgacctt
1321 gaggaggaga aagccaggaa actctcaacc aagtctgctt cacctgacat cgtgggcaca
1381 atcaacgccc ttctggcgag aatcgctgct gcacgttctc tggtgcatcg agcgaaggag
1441 gaactttcta gcagaccaag acctgtagtg ttgatgatat caggcagacc aggaataggg
1501 aagacccacc ttgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag
1561 cgtgtaggcc tcgtcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgttctat gggacgacta tggaatgagc aatcctatcc acgatgccct cagattgcaa
1681 gaactcgctg acacttgtcc cctcacctta aactgtgaca ggattgagaa caaaggaaag
1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ctaacccagc accactggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct
1861 gaggtcgaaa aggcgaagcg tgacttccca ggccaacccg acatgtggaa gaacgccttc
1921 agttctgatt tctcacacat aaaactaaca ttggctccac agggtggttt cgacaagaac
1981 gggaacaccc cacacgggaa gggcgtcatg aagactctca ccactggctc ccttattgcc
2041 cgggcatcag ggctactcca tgagaggcta gatgaatttg aactacaggg cccaactctc
2101 accaccttca actttgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaac
2161 aaatatgggt tgatggacac aatgaaagtt gggaggcagc tcaaggatgt cagaacaatg
2221 ccagagctca agcaagcact caagaatatt tcaatcaaga agtgccagat agtgtatagt
2281 ggtagcacct acacacttga gtctgatggc aagggcaatg tgaaggttga cagagttcag
2341 agcgcctccg tgcagaccaa caatgagctg gctggcgccc tacaccatct aaggtgcgcc
2401 agaataagat actatgtcag gtgtgtccag gaggccctgt attccatcat ccagattgct
2461 ggggctgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaaa cctatggtct
2521 aagccacaag tggaaaatac agaggagact accagcaagg acgggtgtcc aaaacccaaa
2581 gatgatgaag agttcgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaaa
2641 aacaagactg gccgcggcaa gaagcacaca gccttctcaa gcaaaggtct cagtgatgaa
2701 gagtacgatg aatacaagag gattagagaa gaaaggaatg gtaagtactc catagaagag
2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa
2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aacaaggaaa
2881 caacgcaagg aggaaagagc ttctctcggt ttagttacag gttctgaaat taggaaaaga
2941 aatccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac
3001 tacaatgaga aactcagttt tgaagcccca ccaagcatct ggtcgagaat agtcaacttt
3061 ggttcaggtt gggggttctg ggtctccccc agtttgttca taacatcaac ccatgtcata
3121 ccccagggag caaaggagtt cttcggagtc cccatcaaac aaattcaggt gcataagtca
3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc
3241 ttagaagaag gtgcacccga gggcaccgtg gtcacactac tcatcaaaag gcccactgga
3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaaaat ccaaggacgc
3361 actgttggag gtcaaatggg catgcttctg acaggatcca acgccaaaag catggatctg
3421 ggtaccacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg
3481 gtcattggag tccacacggc tgccgctcgt gggggcaaca ctgtcatatg tgccacccag
3541 gggagtgagg gagaggctac acttgaaggt ggtgacaata aagggacata ctgtggtgca
3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg
3661 tccacagcac cactcccacc tggcacctat gaaccagcct atcttggtgg caaggacccc
3721 agagtcaagg gtggcccttc actgcagcag gtcatgaggg atcagctgaa gccattcaca
3781 gagcccaggg gcaagccacc aaagccaagt gtgttggaag ctgctaagaa aaccatcatc
3841 aatgtccttg agcaaacaat tgatccacct gagaaatggt cgttcgcaca agcttgcgcg
3901 tcccttgaca agaccacctc cagtggccat ccgcatcaca tgcggaaaaa cgactgctgg
3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt
4021 gaagaaggga agaacatgac gccagtctat acagctgcgc ttaaggacga attagttaaa
4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggctcgga tttggcgacc
4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc gcactgtgtc
4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg
4261 cactctaggt acacatacca ctatgatgct gattactctc gatgggattc aacacaacag
4321 agagccgtgt tggcagcagc tctagaaatc atggttaagt tctccccaga accacatttg
4381 gcccaggtag tcgcagaaga ccttctttct cctagcgtgg tggacgtggg tgacttcaca
4441 atatcaatta acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc
4501 gcccactggc ttctcaccct ctgtgcgcta tctgaagtta caaacttgtc tcctgacacc
4561 atacaagcta attccctttt ctctttttat ggtgatgacg aaattgttag cacagacata
4621 aaattggacc cagaaaagtt gacagcaaag ctcagggaat atgggttaaa gccaacccgc
4681 cccgacaaaa ctgaaggacc ccttgccatc tctgaagact tgaatggcct gactttcctg
4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata
4801 ctcaggcaaa tgtactggac taggggttcc aaccatgaag acccatctga aacaatgatt
4861 ccacactccc aaagacccat acaactgatg tccctactgg gggaggccgc actccacggc
4921 ccagcattct acagcaaaat cagcaagtta gtcattacag agctaaaaga aggtggcatg
4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat
5161 ggctttggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt tcacagtatc
5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc
5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt
5401 agtcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccaccaaa
5461 tttcccaact gaaggcttga gccccagcca ggtcactatg ttcccccaca taatagtaga
5521 tgtcagacaa ttggaacctg tgttgatccc cttacccgat gttaggaata atttctatca
5581 ctacaatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag
5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgggttctca cgagaccatc
5701 ccccgatttt gatttcatat ttttagtgcc acccacagtt gagtcaagaa ctaaaccatt
5761 ctctgtccct attttaactg ttgaggagat gaccaattca agattcccca ttcctttgga
5821 aaagctgttc acgggtccca gcagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac
5881 gactgatggc gtgctcctag gtaccaccca actgtctcct gtcaacatct gcaccttcag
5941 aggggatgtc acccatatta caggtagtcg taactacaca atgaatttgg ctactcaaaa
6001 ttggaacagt tatgacccaa cagaagaaat cccggcccct ctaggaactc cagatttcgt
6061 ggggaagatt caaggtgtgc tcacccaaac cacaagggca gatggctcga cccgcggcca
6121 caaagctaca gtgtacactg ggagcgccga ttttgctcca aaactgggta gagttcaatt
6181 tgccactgac acagacaatg attttgatgc taaccaaaac acaaagttca ccccagtcgg
6241 tgtcatccag gatggtgata ctgcccaccg aaatgaacct caacaatggg tgctcccaag
6301 ttactcaggc agaaataatc ataatgtgca cctggccccc gctgtagccc ccacttttcc
6361 gggtgagcaa cttctcttct tcagatccac tatgcccgga tgcagcgggt accccaacat
6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctatcaag aggcagcccc
6481 agcacaatct gatgtggctc tgctgagatt tgtgaatcca gacacaggta gggttttgtt
6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacaccggcc aacatgattt
6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact
6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcatta taatggctgg agctttcttt
6721 gctggattgg catctgacgt ccttggctcc ggacttggtt ctctgatcaa tgccggggct
6781 ggggccatca atcaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
6841 caatttagca gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaagca ggcaatgctc
6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca
7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac tacaacatac
7081 aatgcaggcc acttttccac ccctcaactc tcgggggcac taccaggaag agctaatctt
7141 agggctgctg tccccgctcg gggctcctcc agcacatctt ctaactcttc tactgttacc
7201 tctgtgtact caaatcaaac tacttcaacg agacttggtt ctacagctgg ttctggtacc
7261 agtgtctcga gcttcccgtc aactgcaagg gctaggagct gggttgagga tcaaaatagg
7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc
7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact
7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca tccgtaagcg aggggagtca
7501 cgggcgtaa
//