Typing tool
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Typing tool
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Complete norovirus genomes
| AB541195 | GII.4 Den Haag | |
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| GII.P4 Apeldoorn |
ORF1: 1..342
ORF2: 323..1945
ORF3: 1945..2751
LOCUS AB541195 2751 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GII-4/2008a_ORF2-3/JP genes for polyprotein, VP1, VP2,
partial and complete cds.
ACCESSION AB541195
VERSION AB541195.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/2008a_ORF2-3/JP
ORGANISM Norovirus Hu/GII-4/2008a_ORF2-3/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2751)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..2751
/organism="Norovirus Hu/GII-4/2008a_ORF2-3/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/2008a_ORF2-3/JP"
/isolation_source="stool"
/db_xref="taxon:707378"
CDS <1..342
/note="3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13519.1"
/translation="DPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLM
SLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APSFVNEDGVE"
CDS 323..1945
/codon_start=1
/product="VP1"
/protein_id="BAJ13520.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTKGDGSTRGHKATVYTGSAPFTPKLGNVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRDVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 1945..2751
/codon_start=1
/product="VP2"
/protein_id="BAJ13521.1"
/translation="MAGAFFAGLASDVLDSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPGIPTPVRGSSSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg
61 actaggggtt ccaaccatga agacccatct gaaacaatga ttccacactc ccaaaggccc
121 atacaactga tgtccctact gggggaggcc gcactccacg gcccagcatt ctacagcaaa
181 atcagcaagt tagtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga
241 caagagccaa tgtttagatg gatgagattc tcagacctga gcacgtggga gggcgatcgc
301 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg
361 gtccgcagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgttgt
421 cggtgccgct attgcggcgc ctgtggcggg ccaacaaaat gtaattgacc cctggattag
481 aaataatttt gtacaagccc ctggtggaga gttcacagta tcccctagaa acgctccagg
541 tgaaatacta tggagcgcgc ccttaggccc tgatctgaat ccctacctat ctcatttggc
601 cagaatgtat aatggttatg caggtggttt tgaagtgcag gtgatcctcg cggggaacgc
661 gttcaccgcc ggaaaaatta tatttgcagc agttccacca aattttccaa ctgaaggctt
721 gagtcccagc caggtcacta tgttccccca cataatagta gatgttaggc aattggaacc
781 tgtgttaatc cccttacctg atgttaggaa taatttctat cactataacc agtcaaatga
841 ttctaccatt aaattgatag caatgctgta tacaccactt agggctaata atgctgggga
901 agatgtcttc acagtctctt gtcgagtcct cacgaggcca tcccctgatt ttgattttat
961 attcttggtg ccacctacag ttgagtcaag aactaaacca tttactgtcc caatcttaac
1021 tgttgaagaa atgaccaatt caagattccc cattcctttg gaaaagttgt tcacgggtcc
1081 cagcggtgcc tttgttgttc aaccacaaaa tggcagatgc acgactgatg gcgtgctctt
1141 aggcaccacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg tcacccacat
1201 tgcaggttct cgtaactaca caatgaattt ggcttctcta aattggaaca attatgaccc
1261 aacagaagaa attccagccc ctctaggaac tccagatttc gtgggaaaga tccaaggtat
1321 gctcactcaa accacaaagg gagatggctc gacccgtggc cataaagcta cagtttacac
1381 tgggagtgcc ccctttactc caaagctggg caatgttcaa ttcagtactg atacagaaaa
1441 tgattttgaa actcaccaaa acacaaaatt caccccagtc ggtgtcatcc aggatggtag
1501 caccacccac cgaaatgaac cccaacaatg ggtgctccca agttattcag gtagagatgt
1561 ccataatgta cacctagccc ctgctgtagc ccccactttc ccgggtgaac aacttctttt
1621 cttcaggtcc actatgcccg gatgcagcgg gtatcccaac atggatttgg attgcctact
1681 cccccaggag tgggtgcagc acttctacca agaggcggct ccagcacaat ctgatgtggc
1741 tctattgaga tttgtgaatc cagacacggg tagggtcctg tttgagtgca aacttcataa
1801 atcaggctat gtcacagtgg ctcacaccgg ccagcatgat ttggtcatcc cccccaatgg
1861 ctactttagg tttgattcct gggttaatca attctacaca cttgccccca tgggaaatgg
1921 aacggggcgt agacgtgctt tataatggct ggagctttct ttgctggatt ggcatctgat
1981 gtccttgact ctggacttgg ttccctaatc aatgctgggg ctggggctat caaccaaaag
2041 attgattttg aaaataacag aaaattgcag caagcttcct tccagtttag cagtaatcta
2101 caacaggctt cctttcaaca tgataaagag atgctccaag cacaaattga ggccactaag
2161 aagttgcaac aggaaatgat gaaagtcaaa caggcaatgc tcttagaagg tggattttct
2221 gaaacagatg cagcccgtgg ggcaatcaac gcccccatga caaaggcttt ggactggagc
2281 ggaacaaggt actgggcccc tgatgctagg accacaacat acaatgcagg ccgcttctcc
2341 acccctcaac cttcgggggc actgccagga agaatcaatc ccgggattcc tacccccgtt
2401 cggggctcct ccagcacatc ttctaatgct tctactgcta cttctatata ctcaaatcaa
2461 actgtttcaa cgagacttgg ttctacagct ggttctggca ccaacgtctc gagtctcccg
2521 tcaactgcaa ggactaggag ttgggttgag gatcaaaaca gaaatttgtc acctttcatg
2581 aggggggctc acaacatatc gtttgtcacc ccaccatcta gcagatcctc tagtcaaggc
2641 acagtctcaa ccgtgcctaa agaagttttg gactcctgga ctggcgcttt caacacgcgc
2701 aggcagcctc tcttcgctca cattcgtagg cgaggggagt cacgggtgta a
//