Typing tool
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Complete norovirus genomes
AB541195 | GII.4 Den Haag | ||
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GII.P4 Hunter |
ORF1: 1..342 ORF2: 323..1945 ORF3: 1945..2751LOCUS AB541195 2751 bp RNA linear VRL 25-JUL-2016 DEFINITION Norovirus Hu/GII-4/2008a_ORF2-3/JP genes for polyprotein, VP1, VP2, partial and complete cds. ACCESSION AB541195 VERSION AB541195.1 KEYWORDS . SOURCE Norovirus Hu/GII-4/2008a_ORF2-3/JP ORGANISM Norovirus Hu/GII-4/2008a_ORF2-3/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T., Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H. CONSRTM Norovirus Surveillance Group of Japan TITLE Genome Recombination for Independent and Concurrent Evolution of Non-structural and Capsid Proteins of Norovirus GII/4 in Humans JOURNAL Unpublished REFERENCE 2 (bases 1 to 2751) AUTHORS Motomura,K. and Sato,H. TITLE Direct Submission JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan COMMENT These sequences were determined at our laboratory. FEATURES Location/Qualifiers source 1..2751 /organism="Norovirus Hu/GII-4/2008a_ORF2-3/JP" /mol_type="genomic RNA" /strain="Hu/GII-4/2008a_ORF2-3/JP" /isolation_source="stool" /db_xref="taxon:707378" CDS <1..342 /note="3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAJ13519.1" /translation="DPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLM SLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL APSFVNEDGVE" CDS 323..1945 /codon_start=1 /product="VP1" /protein_id="BAJ13520.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTKGDGSTRGHKATVYTGSAPFTPKLGNVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRDVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 1945..2751 /codon_start=1 /product="VP2" /protein_id="BAJ13521.1" /translation="MAGAFFAGLASDVLDSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPGIPTPVRGSSSTSS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg 61 actaggggtt ccaaccatga agacccatct gaaacaatga ttccacactc ccaaaggccc 121 atacaactga tgtccctact gggggaggcc gcactccacg gcccagcatt ctacagcaaa 181 atcagcaagt tagtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga 241 caagagccaa tgtttagatg gatgagattc tcagacctga gcacgtggga gggcgatcgc 301 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg 361 gtccgcagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgttgt 421 cggtgccgct attgcggcgc ctgtggcggg ccaacaaaat gtaattgacc cctggattag 481 aaataatttt gtacaagccc ctggtggaga gttcacagta tcccctagaa acgctccagg 541 tgaaatacta tggagcgcgc ccttaggccc tgatctgaat ccctacctat ctcatttggc 601 cagaatgtat aatggttatg caggtggttt tgaagtgcag gtgatcctcg cggggaacgc 661 gttcaccgcc ggaaaaatta tatttgcagc agttccacca aattttccaa ctgaaggctt 721 gagtcccagc caggtcacta tgttccccca cataatagta gatgttaggc aattggaacc 781 tgtgttaatc cccttacctg atgttaggaa taatttctat cactataacc agtcaaatga 841 ttctaccatt aaattgatag caatgctgta tacaccactt agggctaata atgctgggga 901 agatgtcttc acagtctctt gtcgagtcct cacgaggcca tcccctgatt ttgattttat 961 attcttggtg ccacctacag ttgagtcaag aactaaacca tttactgtcc caatcttaac 1021 tgttgaagaa atgaccaatt caagattccc cattcctttg gaaaagttgt tcacgggtcc 1081 cagcggtgcc tttgttgttc aaccacaaaa tggcagatgc acgactgatg gcgtgctctt 1141 aggcaccacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg tcacccacat 1201 tgcaggttct cgtaactaca caatgaattt ggcttctcta aattggaaca attatgaccc 1261 aacagaagaa attccagccc ctctaggaac tccagatttc gtgggaaaga tccaaggtat 1321 gctcactcaa accacaaagg gagatggctc gacccgtggc cataaagcta cagtttacac 1381 tgggagtgcc ccctttactc caaagctggg caatgttcaa ttcagtactg atacagaaaa 1441 tgattttgaa actcaccaaa acacaaaatt caccccagtc ggtgtcatcc aggatggtag 1501 caccacccac cgaaatgaac cccaacaatg ggtgctccca agttattcag gtagagatgt 1561 ccataatgta cacctagccc ctgctgtagc ccccactttc ccgggtgaac aacttctttt 1621 cttcaggtcc actatgcccg gatgcagcgg gtatcccaac atggatttgg attgcctact 1681 cccccaggag tgggtgcagc acttctacca agaggcggct ccagcacaat ctgatgtggc 1741 tctattgaga tttgtgaatc cagacacggg tagggtcctg tttgagtgca aacttcataa 1801 atcaggctat gtcacagtgg ctcacaccgg ccagcatgat ttggtcatcc cccccaatgg 1861 ctactttagg tttgattcct gggttaatca attctacaca cttgccccca tgggaaatgg 1921 aacggggcgt agacgtgctt tataatggct ggagctttct ttgctggatt ggcatctgat 1981 gtccttgact ctggacttgg ttccctaatc aatgctgggg ctggggctat caaccaaaag 2041 attgattttg aaaataacag aaaattgcag caagcttcct tccagtttag cagtaatcta 2101 caacaggctt cctttcaaca tgataaagag atgctccaag cacaaattga ggccactaag 2161 aagttgcaac aggaaatgat gaaagtcaaa caggcaatgc tcttagaagg tggattttct 2221 gaaacagatg cagcccgtgg ggcaatcaac gcccccatga caaaggcttt ggactggagc 2281 ggaacaaggt actgggcccc tgatgctagg accacaacat acaatgcagg ccgcttctcc 2341 acccctcaac cttcgggggc actgccagga agaatcaatc ccgggattcc tacccccgtt 2401 cggggctcct ccagcacatc ttctaatgct tctactgcta cttctatata ctcaaatcaa 2461 actgtttcaa cgagacttgg ttctacagct ggttctggca ccaacgtctc gagtctcccg 2521 tcaactgcaa ggactaggag ttgggttgag gatcaaaaca gaaatttgtc acctttcatg 2581 aggggggctc acaacatatc gtttgtcacc ccaccatcta gcagatcctc tagtcaaggc 2641 acagtctcaa ccgtgcctaa agaagttttg gactcctgga ctggcgcttt caacacgcgc 2701 aggcagcctc tcttcgctca cattcgtagg cgaggggagt cacgggtgta a //