Typing tool
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Complete norovirus genomes
AB541192 | GII.4 Den Haag | ||
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GII.P4 Yerseke |
ORF1: 1..342 ORF2: 323..1945 ORF3: 1945..2748LOCUS AB541192 2748 bp RNA linear VRL 25-JUL-2016 DEFINITION Norovirus Hu/GII-4/2007b_ORF2-3/JP genes for polyprotein, VP1, VP2, partial and complete cds. ACCESSION AB541192 VERSION AB541192.1 KEYWORDS . SOURCE Norovirus Hu/GII-4/2007b_ORF2-3/JP ORGANISM Norovirus Hu/GII-4/2007b_ORF2-3/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T., Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H. CONSRTM Norovirus Surveillance Group of Japan TITLE Genome Recombination for Independent and Concurrent Evolution of Non-structural and Capsid Proteins of Norovirus GII/4 in Humans JOURNAL Unpublished REFERENCE 2 (bases 1 to 2748) AUTHORS Motomura,K. and Sato,H. TITLE Direct Submission JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan COMMENT These sequences were determined at our laboratory. FEATURES Location/Qualifiers source 1..2748 /organism="Norovirus Hu/GII-4/2007b_ORF2-3/JP" /mol_type="genomic RNA" /strain="Hu/GII-4/2007b_ORF2-3/JP" /isolation_source="stool" /db_xref="taxon:707375" CDS <1..342 /note="3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAJ13512.1" /translation="DPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLM SLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL APSFVNEDGVE" CDS 323..1945 /codon_start=1 /product="VP1" /protein_id="BAJ13513.1" /translation="MKMASSDANPPDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDATHIAGSRSYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFQTHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRDVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 1945..2748 /codon_start=1 /product="VP2" /protein_id="BAJ13514.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRIPTPARGSSSTSS NASTATSIYSNQTVSTRLGSTAAGTNVSSLPSTARTRSWVEDQNRNLSPFMGGAHNIS FVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 gacccagctg gttggtttgg aaaactggag cagagttcaa tacttaggca aatgtactgg 61 actaggggtt ccaaccatga agacccatct gaaacaatga ttccacactc ccaaaggccc 121 atacaactga tgtccctact gggggaggcc gcactccacg gtccagcatt ctacagcaaa 181 atcagcaagt tagtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga 241 caagagccaa tgtttagatg gatgagattc tcagacctga gcacgtggga gggcgatcgc 301 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc cacctgatgg 361 gtccgcagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgttgt 421 cggtgccgct attgcggcgc ctgtggcggg ccaacaaaat gtaattgacc cctggattag 481 aaataatttt gtgcaagccc ctggtggaga gttcacagta tcccctagaa acgctccagg 541 tgaaatacta tggagcgcgc ccttaggccc tgatctgaat ccctacctat ctcatttggc 601 cagaatgtat aatggttatg caggtggttt tgaagtgcag gtgatcctcg cggggaacgc 661 gttcaccgcc ggaaaaatta tatttgcagc agttccacca aattttccaa ctgagggctt 721 gagtcccagc caggtcacta tgttccccca cataatagta gatgttaggc aattggaacc 781 tgtgttaatc cccttacctg atgttaggaa taatttctat cactataacc agtcaaatga 841 ttctaccatt aaattgatag caatgctgta tacaccactt agggctaata atgctgggga 901 agatgtcttc acagtctctt gtcgagtcct cacgaggcca tcccctgatt ttgattttat 961 attcttggtg ccacctacag ttgagtcaag aactaaacca tttactgtcc caatcttaac 1021 tgttgaagaa atgaccaatt caagattccc cattcctttg gaaaagttgt tcacgggtcc 1081 cagcggtgcc tttgttgttc aaccacaaaa tggcagatgc acgactgatg gcgtgctctt 1141 aggcaccacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg ccacccacat 1201 tgcaggttct cgtagctaca caatgaattt ggcttctcta aattggaaca attatgaccc 1261 aacagaagaa attccagccc ctctaggaac tccagatttc gtgggaaaga tccaaggtat 1321 gctcactcaa accacaaagg gagatggctc gacccgtggc cataaagcta cagtttacac 1381 tgggagtgcc ccctttactc caaagctggg cagtgttcaa ttcagtactg atacagaaaa 1441 tgattttcaa actcaccaaa acacaaaatt caccccagtc ggtgtcatcc aggatggtag 1501 caccacccac cgaaatgaac cccaacaatg ggtgctccca agttattcag gtagagatgt 1561 ccataatgta cacctagccc ctgctgtagc ccccactttc ccgggtgaac aacttctttt 1621 cttcaggtcc actatgcccg gatgcagcgg gtatcccaac atggatttgg attgcctact 1681 cccccaggag tgggtgcagc acttctacca agaggcggct ccagcacaat ctgatgtggc 1741 tctattgaga tttgtgaatc cagacacggg tagggtcctg tttgagtgca aacttcataa 1801 atcaggctat gtcacagtgg ctcacaccgg ccagcatgat ttggtcatcc cccccaatgg 1861 ctactttagg tttgattcct gggttaatca attctacaca cttgccccca tgggaaatgg 1921 aacggggcgt agacgtgctt tataatggct ggagctttct ttgctggatt ggcatctgat 1981 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggctat caaccaaaag 2041 attgattttg aaaataacag aaaattgcag caagcttcct tccagtttag cagtaatcta 2101 caacaggctt cctttcaaca tgataaagag atgctccaag cacaaattga ggccactaag 2161 aagttgcaac aggaaatgat gaaagtcaaa caggcaatgc tcttagaagg tggattttct 2221 gaaacagatg cagcccgtgg ggcaatcaac gcccccatga caaaggcttt ggactggagc 2281 ggaacaaggt actgggcccc tgatgctagg accacaacat acaatgcagg ccgcttctcc 2341 acccctcaac cttcgggggc actgccagga agaatcaatc ccaggattcc tacccccgct 2401 cggggctcct ccagcacatc ttctaatgct tctactgcta cttctatata ctcaaatcaa 2461 actgtttcaa cgagacttgg ttctacagct gctggcacca acgtctcgag tctcccgtca 2521 actgcaagga ctaggagttg ggttgaggat caaaacagaa atttgtcacc tttcatgggg 2581 ggggctcaca acatatcgtt tgtcacccca ccatctagca gatcctctag tcaaggcaca 2641 gtctcaaccg tgcctaaaga agttttggac tcctggactg gcgctttcaa cacgcgcagg 2701 cagcctctct tcgctcacat tcgtaggcga ggggagtcac gggtgtaa //