Typing tool
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Typing tool
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Complete norovirus genomes
| AB541190 | GII.4 Osaka | |
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| GII.P31 |
ORF1: 1..342
ORF2: 323..1945
ORF3: 1945..2751
LOCUS AB541190 2751 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GII-4/2007a_ORF2-3/JP genes for polyprotein, VP1, VP2,
partial and complete cds.
ACCESSION AB541190
VERSION AB541190.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/2007a_ORF2-3/JP
ORGANISM Norovirus Hu/GII-4/2007a_ORF2-3/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Genome Recombination for Independent and Concurrent Evolution of
Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2751)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..2751
/organism="Norovirus Hu/GII-4/2007a_ORF2-3/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/2007a_ORF2-3/JP"
/isolation_source="stool"
/db_xref="taxon:707373"
CDS <1..342
/note="3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAJ13507.1"
/translation="DPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLM
SLLGEAALHGPALYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APSFVNEDGVE"
CDS 323..1945
/codon_start=1
/product="VP1"
/protein_id="BAJ13508.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRSDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG
STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDMALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
CDS 1945..2751
/codon_start=1
/product="VP2"
/protein_id="BAJ13509.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSISS
NASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 gacccagctg gttggtttgg aaaattggaa caaagctcaa ttctcaggca aatgtactgg
61 accaggggcc ccaaccatga agatccatct gaaacaatga taccacactc ccaaagaccc
121 atacaattga tgtctctgct gggcgaggct gcactccacg gcccggcact ctatagtaaa
181 attagtaagt tagtcattgc agagttgaag gaaggtggca tggattttta cgtgcccaga
241 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc
301 aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccaacc catctgatgg
361 gtccacagcc aacctcgtcc cagaggtcaa caatgaggta atggctttgg agcccgttgt
421 aggtgccgct attgcggcgc ctgtagcggg ccaacaaaat gtaattgacc cctggattag
481 aaataatttt gtacaagccc ctggtggaga gtttacagtg tcccccagaa atgctccagg
541 tgagatacta tggagtgcgc ccttgggccc tgatttgaac ccttaccttt ctcatctggc
601 cagaatgtat aatggttatg caggtggttt tgaagtgcag gtaatcctcg cggggaacgc
661 gttcaccgcc ggaaaaatca tatttgcagc agttccacct aactttccaa ctgaaggctt
721 gagccctagc caggttacta tgttccccca tataatagta gatgttaggc aattggaacc
781 tgtgttgatc cccttacctg atgttaggaa taacttctat cactacaacc agtcaaatga
841 ccctaccatt aaattgatag caatgttgta cacaccactt agggccaata atgctgggga
901 tgatgtcttc acagtctctt gtcgagtcct cacgagacca tcccctgact ttgacttcat
961 atttctggta ccaccaacag ttgaatcaag aaccaaacca tttaccgttc caatcttaac
1021 tgttgaggaa atgaccaatt caagattccc cattcctttg gaaaggttgt acacgggtcc
1081 cagcagtgct tttgttgtcc agccacaaaa cggcaggtgc acgactgatg gcgtgctctt
1141 aggtaccacc cagctgtctg ctgtcaacat ctgcaccttt agaggggatg tcactcacat
1201 tgcaggctct cgcaattata caatgaattt ggcctctcaa aattggaaca actatgatcc
1261 aacagaagaa atcccagccc ccctgggcac cccagatttc gtgggaaaga tccaaggcat
1321 gctcacccaa accacaagaa gtgatggctc gacccgcggc cacaaggcca cagtgctcac
1381 tgggagtgcc gacttcgccc caaaattggg cagagttcaa ttcgccactg acacagacaa
1441 cgatttcgaa tctggccaaa acacgaaatt caccccagtt ggcgtcatcc aggatggctc
1501 cactacccac cgaaatgaac ctcaacaatg ggtactccca aattactcag gtagaactgg
1561 tcataatgtg catctagccc ctgctgttgc ccccacttac ccgggtgagc aactcctttt
1621 cttcaggtcc actatgcccg gatgtagcgg gtaccccaac atggatctag attgcttgct
1681 cccccaggag tgggtgcagc acttctacca agaagcagct ccagcacaat ctgatatggc
1741 tctgctaaga tttgtgaatc cagacacagg tagggttctc tttgagtgca agctccataa
1801 atcaggatat gtcacagtgg ctcacactgg tcagcatgat ttggttattc cccccaatgg
1861 ttattttaga tttgattcct gggttaatca attctacaca ctcgccccca tgggaaatgg
1921 gacggggcgt agacgtgctg tataatggct ggagctttct ttgctggatt ggcatctgat
1981 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggctat caaccaaaag
2041 attgattttg aaaataacag aaaactgcag caagcttctt tccagtttag cagcaatctg
2101 caacaggctt cctttcaaca tgataaagag atgctccaag cacaaattga ggccactaaa
2161 aagttgcaac aggaaatgat gaaagtcaaa caggcaatgc tcttagaagg tggattctct
2221 gaaacagatg cagcccgtgg ggcaatcaac gcccccatga caaaggcttt ggactggagc
2281 ggaacaaggt actgggcccc tgatgctagg actacaacat acaatgcagg ccgcttctcc
2341 acccctcaac cttcgggggc attgtcagga agaatcaatc ccaggactcc cacccccgct
2401 cggggttcct ctagcatatc ttctaatgct tctactgcta cttctgtata ttcaaatcaa
2461 actgtttcaa cgagacttgg ttctacagct ggttctggca ccaatgtctc gagtctcccg
2521 tcaactgcaa ggactaggag ttgggttgag gatcaaaaca gaaatctgtc acctttcatg
2581 aggggggctc acaacatatc gtttgtcacc ccaccatcta gcagatcctc tagccagggc
2641 acagtctcaa ccgtgcctaa agaagttttg gactcctgga ctggcgcttt caacacgcgc
2701 aggcagcctc tcttcgctca cattcgtagg cgaggggagt cacgggtgta a
//