Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| AB447458 | GII.4 Yerseke | |
|
|---|---|---|---|
| GII.P4 Yerseke |
ORF1: 3..5102
ORF2: 5083..6705
ORF3: 6705..7511
LOCUS AB447458 7511 bp RNA linear VRL 05-NOV-2008
DEFINITION Norovirus Hu/GII-4/Saga5/2006/JP genomic RNA, complete genome.
ACCESSION AB447458
VERSION AB447458.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Saga5/2006/JP
ORGANISM Norovirus Hu/GII-4/Saga5/2006/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Oka,T., Yokoyama,M., Nakamura,H., Mori,H., Ode,H.,
Hansman,G.S., Katayama,K., Kanda,T., Tanaka,T., Takeda,N. and
Sato,H.
CONSRTM and the Norovirus Surveillance Group of Japan
TITLE Identification of monomorphic and divergent haplotypes in the
2006-2007 norovirus GII/4 epidemic population by genomewide tracing
of evolutionary history
JOURNAL J. Virol. 82 (22), 11247-11262 (2008)
PUBMED 18768979
REFERENCE 2 (bases 1 to 7511)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (14-JUL-2008) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7511
/organism="Norovirus Hu/GII-4/Saga5/2006/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Saga5/2006/JP"
/isolation_source="stool"
/db_xref="taxon:546982"
/country="Japan:Saga"
CDS 3..5102
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAG70520.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANLFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREM
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKNISIKKCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
RGKPPKPSVLDAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5083..6705
/codon_start=1
/product="VP1"
/protein_id="BAG70521.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
GTTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6705..7511
/codon_start=1
/product="VP2"
/protein_id="BAG70522.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRAAVPAWGSSSTPS
NSSTATSVHSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca
61 ccgcaaaatc ttcaagtgac ggagtgcttt ctagcatggc tgtcactttt aaacgagccc
121 tcggggcgcg gcctaaacaa cctcccccga gggaaatacc acaaagaccc ccacgaccac
181 ctactccaga actggttaaa aatatccccc ctcccccgcc caacggagag gatgaaatag
241 tggtttctta tagtgtcaaa gatggtgttt ccggtttgcc tgacctttcc accgtcaggc
301 aaccggaaga atctaacacg gcctttagtg tccctccact caatcagagg gagaatagag
361 atgctaagga gccactgact gggacaattc tggaaatgtg ggatggagaa atctaccatt
421 atggcctgta tgtggagcga ggtcttgtac taggtgtgca caaaccacca gctgccatta
481 gcctcgctag ggtcgagcta gcaccactct ccttgtactg gagacctgtg tacactcccc
541 agtacctcat ctctccagac actctcaaga aattacacgg agaaacgttc ccctacacag
601 cctttgacaa caattgttat gccttttgtt gctgggtcct ggacctaaat gactcatggc
661 tgagcaggag aatgatccag agaacaactg gtttcttcag gccctaccaa gattggaata
721 ggaaacccct ccccactatg gatgactcca aattaaagaa ggtagctaac ttatttctgt
781 gtgctctgtc ttcgctattc accaggccca taaaagatat aataggaaag ctaaggcctc
841 ttaacatcct caacatctta gcctcatgtg attggacttt tgcaggcata gtggagtccc
901 tgatactctt ggcagaactc tttggagttt tctggacacc cccagatgtg tctgcgatga
961 ttgccccctt actcggtgac tacgagctac aaggacctga ggaccttgca gtggagctcg
1021 tccccgtagt gatgggggga attggtttgg tgctaggatt caccaaagag aagattggga
1081 aaatgttgtc atctgctgca tccaccttga gagcttgtaa agaccttggt gcatatgggc
1141 tagagatcct aaagttggtc atgaagtggt tcttcccgaa gaaggaggaa gcaaatgaat
1201 tggctatagt gagatctatc gaggatgcag tcctggatct cgaggcaatt gaaaacaacc
1261 atatgaccac cttgctcaaa gacaaagaca gtctggcaac ctatatgaga acccttgacc
1321 ttgaggagga gaaagccagg aaactctcaa ccaagtctgc ctcacctgac atcgtgggca
1381 caatcaacgc ccttctggcg agaatcgctg ctgcacgctc tctggtgcat cgagcgaagg
1441 aggaactttc cagcagacca agacctgtag tattgatgat atcaggcaga ccaggaatag
1501 ggaagaccca cctcgctagg gaaatggcta aaagaatcgc agcctccctc acaggagacc
1561 agcgtgtagg cctcgtccca cgcaatggcg tcgaccactg ggatgcgtac aagggggaga
1621 gggtcgtcct atgggacgat tatgggatga gcaatcccat tcacgatgcc ctcaggttgc
1681 aagaactcgc cgacacttgc cccctcactc taaactgtga caggattgag aataaaggaa
1741 aggtctttga cagcgatgtc atcattatca ccactaatct ggccaaccca gcaccactgg
1801 actatgtcaa ctttgaggca tgctcgaggc gcatcgactt cctcgtgtat gcagaagccc
1861 ctgaagtcga aaaggcgaag cgtgacttcc caggccaacc tgacatgtgg aagaacgcct
1921 tcagttctga tttctcacac ataaaactaa cattggcccc acagggtggc tttgacaaga
1981 acgggaacac cccacacgga aggggcgtca tgaagactct caccactggc tcccttattg
2041 cccgggcatc agggctactc catgagaggt tagatgaatt tgaactacag ggcccaactc
2101 tcactacctt caatttcgat cgcaataaag tgcttgcctt tagacaactt gctgctgaaa
2161 acaaatatgg gttgatggac acaatgaggg ttgggagaca gctcaaggat gtcagaacca
2221 tgccagaact caaacaagca ctcaagaata tctcaatcaa gaagtgccag atagtgtata
2281 gtggttgcac ctacatactt gagtctgacg gcaagggcaa tgtgaaagtt gacagagttc
2341 agagcgcctc cgtgcagacc aacaatgagc tgactggtgc cctgcaccat ttgaggtgcg
2401 ccaggatcag atactatgtc aagtgtgtcc aggaggccct gtattccatc atccaaattg
2461 ctggggctgc gtttgtcacc acacgcatcg tcaagcgcat gaacatacaa gacctatggt
2521 ccaagccaca agtggaaaac acagaggaga ccaccagcaa ggacgggtgt ccaaaaccca
2581 aagatgatga ggagtttgtc atttcatccg acgacatcaa aactgagggt aagaaaggga
2641 agaacaagac tggccgcggc aagaagcaca cagccttttc aagcaaaggt ctcagtgatg
2701 aagagtacga tgagtacaag aggattagag aagaaaggaa tggcaagtac tccatagaag
2761 aataccttca ggacagggac aaatactatg aggaggtggc cattgccagg gcgactgagg
2821 aagacttctg tgaagaggag gaggccaaga tccggcaaag gatcttcagg ccaacaagga
2881 aacaacgcaa ggaggaaaga gcttctctcg gtctggtcac aggttctgaa attaggaaaa
2941 gaaacccaga tgatttcaaa cccaagggga aactgtgggc tgacgatgac agaagtgtgg
3001 actataatga gaaactcagc tttgaggccc caccaagcat ctggtcgagg atagtcaact
3061 ttggctcagg ctggggattc tgggtctccc ccagtctgtt cataacatcg acccatgtca
3121 taccccaggg cgcaaaggag ttctttggag tccccatcaa acaaattcag gtacacaagt
3181 caggcgagtt ctgtcgcttg agattcccaa aaccaatcag gactgatgtg acaggcatga
3241 tcttagaaga aggcgcaccc gagggcaccg tggtcacact actcatcaaa aggtccactg
3301 gggaactcat gcccctagca gctaggatgg ggacccatgc aaccatgaag atccaagggc
3361 gcaccgttgg aggccaaatg ggcatgcttc tgacaggatc caacgccaaa agcatggatc
3421 tgggtactac accaggtgat tgtggctgtc cctacatcta caagagagga aatgactatg
3481 tggtcattgg agtccacacg gctgccgctc gtgggggaaa cactgtcata tgtgccaccc
3541 aggggagtga gggagaggct acacttgaag gtggtgacaa caagggtaca tactgtggtg
3601 caccaatcct aggcccaggg agtgccccaa aacttagcac caagaccaaa ttctggagat
3661 cgtccacggc atcactccca cctggcacct atgaaccagc ctatcttggt ggcaaggacc
3721 ctagagtcaa gggtggccct tcactgcagc aagtcatgag ggaacagttg aagccattca
3781 cagagcccag gggcaagcca ccgaagccaa gtgtgttaga cgctgccaag aagaccatca
3841 tcaatgtcct tgagcaaaca attgatccac ctgagaaatg gtcattcgca caagcttgcg
3901 cgtcccttga caagaccact tccagtggcc atccgcacca catgcggaaa aacgactgct
3961 ggaacgggga gtccttcaca ggcaagctag cagaccaggc ttccaaggcc aatctgatgt
4021 ttgaagaagg gaagaacatg accccagtct acacagctgc gctcaaggat gaattagtta
4081 aaactgacaa aatttatggt aagatcaaga agaggcttct ctggggctcg gacttggcga
4141 ccatgattcg gtgtgctcga gcattcggag gcctaatgga tgaactcaaa gcacactgtg
4201 tcacacttcc cattagagtt ggtatgaata tgaatgagga tggccccatc atcttcgaga
4261 ggcattccag gtacacatac cactatgatg ctgattactc tcgatgggat tcgacacaac
4321 agagagccgt gttggcagca gctctagaaa tcatggttaa attctcccca gaaccacatt
4381 tggctcaggt agtcgcggaa gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca
4441 caatatcaat caacgagggt cttccctctg gggtgccctg cacctcccaa tggaactcca
4501 tcgcccactg gcttctcact ctctgtgcgc tctctgaagt tacaaacttg tcccctgata
4561 ccatacaggc taattccctc ttctcttttt atggtgatga tgaaattgtt agcacagata
4621 taaaattgga cccagagaaa ttgacagcaa agctcaggga atatgggtta aaaccaaccc
4681 gccctgacaa aactgaagga ccccttgtca tctctgaaga cttgaatggc ctgactttcc
4741 tgcggagaac tgtgacccgc gacccagctg gttggtttgg aaaactggag cagagttcaa
4801 tactcaggca aatgtactgg actaggggct ccaaccatga agacccatct gaaacaatga
4861 ttccacactc ccaaagaccc atacaattga tgtccctact gggggaggcc gctcttcacg
4921 gcccagcatt ctacagcaaa atcagcaagt tagtcattgc agagctaaaa gaaggtggca
4981 tggattttta cgtgcccaga caagagccaa tgttcagatg gatgagattc tcagatctga
5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgagt
5101 gacgccaacc catctgatgg gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt
5161 atggctttgg agcccgttgt tggtgccgct attgcggcac ctgtagcggg ccaacaaaac
5221 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtggaga gtttacagta
5281 tcccctagaa acgctccagg tgaaatacta tggagcgcgc ccttgggccc tgatttgaat
5341 ccttaccttt cccatttggc cagaatgtac aatagttatg caggtggttt tgaagtgcag
5401 gtaatcctcg cggggaacgc gttcaccgcc ggaaagatca tatttgcagc agtcccacca
5461 aatttcccaa ctgaaggctt gagccccagc caggtcacta tgttccccca tataatagta
5521 gatgttaggc aactggaacc tgtgttgatc cctttgcccg atgttaggaa taatttctat
5581 cactacaatc aatcaaatga ccccaccatc aaattgatag caatgttgta cacaccactt
5641 agggctaata atgctgggga cgatgtcttc acagtttctt gtcgggttct cacgagacca
5701 tcccccgatt ttgatttcat atttttagtg ccacccacag ttgagtcaag aactaaacca
5761 ttctctgtcc cagttttaac tgttgaggag atgaccaatt caagattccc cattcctttg
5821 gaaaagttgt ttacgggtcc cagcagtgcc tttgttgttc aaccacagaa tggcaggtgc
5881 acgactgatg gcgtgctctt aggcaccacc caactgtctc ctgtcaacat ctgcaccttc
5941 agaggggatg tcacccacat tgctggtact caagaataca caatgaatct ggcctcccaa
6001 aactggaaca attatgaccc aacagaagaa atcccagccc ctctgggaac tccagatttc
6061 gtgggcaaga tccaaggcgt gctcacccaa accacaagga gggatggctc gacccgcggt
6121 cacaaagcca cagtgagcac tggaagtgtc cacttcaccc caaagctggg cagaattcaa
6181 ttctccactg atacaagcaa tgattttgaa actggccaaa acacgagatt caccccagtc
6241 ggtgttgtcc aggatggtgg taccacccac caaaatgaac cccaacaatg ggtactccca
6301 aattattcag gtagagatag tcacaatgtg cacctagccc ctgccgtggc cccctctttt
6361 ccgggtgagc aacttctttt cttcaggtcc actatgcccg gatgcagcgg gtatcccaac
6421 atgaatttgg attgtctact cccccaggag tgggtgcagc acttctacca agaggcagcc
6481 ccagcacaat ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttctg
6541 tttgagtgta agcttcataa atcaggctat gtcacagtgg ctcacactgg ccaacatgat
6601 ttagttatcc cccccaatgg ctattttaga tttgattcct gggtcaacca gttctacaca
6661 cttgccccca tgggaaatgg aacggggcgt agacgtgcat tataatggct ggagctttct
6721 ttgctggatt ggcatctgat gtcctcggct ctggacttgg ttccctaatc aatgctgggg
6781 ctggggccat caatcaaaaa gttgaatttg aaaataacag aaaattgcaa caagcttcct
6841 tccaatttag cagcaaccta caacaggctt cctttcaaca tgataaagag atgctccaag
6901 cacaaattga ggccaccaaa aagttgcaac aggaaatgat gaaagttaaa caggcaatgc
6961 tcctagaggg tgggttctct gagacagatg cagcccgtgg ggcaatcaac gcccccatga
7021 caaaggcttt ggactggagc gggacaaggt actgggctcc cgatgctagg actacaacat
7081 acaatgcagg ccgcttttcc acccctcaac cctcgggggc actgccaggg aggaccaatc
7141 ttagggctgc tgtccccgcc tggggctcct ctagtacacc ttctaactct tccactgcca
7201 cttctgtgca ctcaaatcaa actgcttcaa cgagacttgg ttccacagct ggttctggta
7261 ccagtgtctc gagcctcccg tcaactgcaa ggaccaggag ctgggttgag gatcaaaaca
7321 ggaatttgtc acctttcatg aggggggccc acaatatatc gtttgtcacc ccaccatcta
7381 gcagatcctc tagccaaggc acagtctcaa ccgtgcctaa agaagttttg gactcctgga
7441 ctggcgcttt caacacgcgc aggcagcctc tcttcgctca cattcgtaag cgaggggagt
7501 cacgggtgta a
//