Typing tool
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Complete norovirus genomes
AB447456 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS AB447456 7559 bp RNA linear VRL 08-APR-2014 DEFINITION Norovirus Hu/GII-4/Saga1/2006/JP genomic RNA, complete genome. ACCESSION AB447456 VERSION AB447456.2 KEYWORDS . SOURCE Norovirus Hu/GII-4/Saga1/2006/JP ORGANISM Norovirus Hu/GII-4/Saga1/2006/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Motomura,K., Oka,T., Yokoyama,M., Nakamura,H., Mori,H., Ode,H., Hansman,G.S., Katayama,K., Kanda,T., Tanaka,T., Takeda,N. and Sato,H. CONSRTM Norovirus Surveillance Group of Japan TITLE Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history JOURNAL J. Virol. 82 (22), 11247-11262 (2008) PUBMED 18768979 REFERENCE 2 (bases 1 to 7559) AUTHORS Motomura,K. and Sato,H. TITLE Direct Submission JOURNAL Submitted (14-JUL-2008) Contact:Kazushi Motomura National Institute of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan COMMENT On Apr 11, 2014 this sequence version replaced AB447456.1. These sequences were determined at our laboratory. FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/GII-4/Saga1/2006/JP" /mol_type="genomic RNA" /strain="Hu/GII-4/Saga1/2006/JP" /isolation_source="stool" /db_xref="taxon:546980" /country="Japan:Saga" CDS 5..5104 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAG70514.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGC PKPKDDEEFVISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /codon_start=1 /product="VP1" /protein_id="BAG70515.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGLL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /codon_start=1 /product="VP2" /protein_id="BAG70516.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSSSTSS NASTATSIYSTQTVSTGLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc 121 ccttggggcg cggcctaaac agcccccccc gagggaaaca ccacaaagac ccccacgacc 181 acctactcca gaactggtca aaaagatccc tcctcccccg cccaacggag aggatgaagt 241 agtggtttct tatagtgcca aagatggcgt ttccggttta cctgagcttt ccaccgtcag 301 gcaaccggaa gaaaccaata cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 agatgctaag gaaccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgttgagc gaggtcttgt gctgggtgtg cacaaaccac cagctgccat 481 tagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc 541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacat ttccctacac 601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggatctaa atgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcta acatattcct 781 gtgcaccctg tcttcgctat tcaccaggcc cataaaagac ataataggaa agttaaggcc 841 tctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg atttcgagtt gcaaggacct gaggaccttg tagtggagct 1021 cgtccctgta gtaatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aggcaaatga 1201 gctggctatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctacatga gaacccttga 1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa 1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccagggat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga 1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggct 1681 gcaagaactc gctgacactt gccctctcac tctaaattgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat cactactaat ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc 1861 ccccgaggtc gaaaaggcga agcgtgactt cccgggccaa cctgatatgt ggaaaaacgc 1921 ttttagttct gatttctctc acataaaatt ggcactggct ccacaaggtg gctttgataa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccactg gctccctcat 2041 tgcccgggca tcagggctgc tccatgagag attggatgag tttgaactac agggcccagc 2101 tcttaccacc ttcaactttg accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcaaaac 2221 catgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agattgtgta 2281 tagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcacc tccgtacaga ccaacaatga gctggctggc gccctgcacc atctaaggtg 2401 cgccagaatc aggtactatg tcaagtgtgt ccaggaggcc ctgtattcta tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat catcaagcgt gtgaacattc aagacttatg 2521 gtccaagcca caagtggaaa acacagagga ggctaccaac aaggacgggt gcccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc tgacgacatt aaaactgagg gtaagaaagg 2641 gaagaacaag gctggccgtg gcaagaagca cacagccttc tcaagtaaag gcctcagtga 2701 tgaagagtat gatgagtaca agagaattag agaggaaagg aatggcaagt actccataga 2761 ggagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca gaccaacaag 2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaaccca gaagacttca agcccaaggg gaaactatgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcaa ggatagtcaa 3061 ctttggctca ggttggggct tctgggtctc ccccagcctg ttcataacat caacccacgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 gtcaggcgag ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat 3241 gatcttggaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcatca aaaggtctac 3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg 3361 gcgcactgtt ggaggtcaga tgggtatgct tctgacagga tccaacgcca aaagcatgga 3421 tctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggggt gagggggaag ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag 3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga 3721 ccccagagtc aagggtggcc cctcgttgca gcaagtcatg agggaccagc tgaaaccatt 3781 tacagagccc aggggtaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat 3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cttctagcgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gaatccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacaggt gcacttaagg atgaattagt 4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttagc 4141 aaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg 4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaagcattcc aggtacagat accactatga tgctgattac tctcggtggg attcaacaca 4321 acagagagcc gtgctggcag ctgctctaga aatcatggtt aaattctcct cagaaccaca 4381 tttggctcag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt 4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc actctccgaa gttacaaatt tgtctccaga 4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagtacaga 4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatatgggt tgaaaccaac 4681 ccgccctgat aaaactgaag gacctcttgt tatttctgaa gacttagatg gtttgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc 4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagatccat ctgaatcaat 4861 gattccacac tctcaaagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca 4921 cggcccaaca ttctacagta aaatcagcaa attagtcatt gcagagctaa aagaaggtgg 4981 tatggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatctga 5341 atccctacct atctcatttg gccagaatgt ataatggtta tgcaggtggc tttgaagtgc 5401 aggtgatcct cgcggggaac gcgttcaccg ccggaaaaat tatatttgca gcagtcccac 5461 caaattttcc aactgaaggc ttgagtccca gccaagtcac tatgttcccc cacataatag 5521 tagatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataatttct 5581 atcattataa tcagtcaaat gattctacca ttaaattgat agcaatgctg tatacaccac 5641 ttagggctaa taatgctggg gaagatgtct tcacagtctc ttgtcgagtc ctcacgaggc 5701 catcccctga ttttgacttt atatttttgg tgccacctac agttgagtca agaactaaac 5761 catttactgt cccaatctta actgttgaag aaatgaccaa ttcaagattc cccattcctt 5821 tggaaaagtt gttcacgggt cccagcggtg cctttgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggtt ctcgtaatta cacaatgaat ttggcttctc 6001 taaattggaa caattatgac ccaacagaag aaattccagc ccctctagga actccagatt 6061 tcgtgggaaa gatccaaggt ttgctcactc aaaccacaaa gggagatggc tcgacccgtg 6121 gccataaagc tacagtttac actgggagtg ccccctttac tccaaagctg ggcagtgttc 6181 aattcagtac tgatacagaa aatgattttg aaactcacca aaacacaaaa ttcaccccag 6241 tcggtgtcat ccaggatggt agcaccaccc accgaaatga accccaacaa tgggtgctcc 6301 caagttattc aggtagaaat gttcataatg tacacctagc ccctgctgta gcccccactt 6361 ttccgggtga acaacttctt ttcttcaggt ccactatgcc cggatgcagc gggtatccca 6421 acatggattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag 6481 ctccagcaca atctgatgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc 6541 tgtttgagtg caaacttcat aaatcaggct atgtcacagt ggctcacacc ggccagcatg 6601 atttggtcat cccccccaat ggctatttta ggtttgattc ctgggttaat caattctaca 6661 cacttgcccc catgggaaat ggaacggggc gcagacgtgc tttataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaatgctgg 6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc 6841 cttccagttt agcagtaatc tacagcaggc ttccttccaa catgataaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat 6961 gctcttagaa ggtgggttct ctgaaacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggactacaac 7081 atacaatgca ggccgctttt ccacccctca accttcaggg gcactgccag gaagaatcaa 7141 tcccaggact cctacccccg ctcggggctc ctccagtaca tcttctaatg cttctactgc 7201 tacttctata tattcaactc aaactgtttc aacgggactt ggttctacag ctggttctgg 7261 taccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa 7321 cagaaatttg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgca ggcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattacctcc cttttcttta gtgtctttt //