Typing tool
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Typing tool
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Complete norovirus genomes
| AB447448 | GII.4 Asia | |
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| GII.P12 |
ORF1: 3..5102
ORF2: 5083..6705
ORF3: 6705..7511
LOCUS AB447448 7511 bp RNA linear VRL 05-NOV-2008
DEFINITION Norovirus Hu/GII-4/Sakai2/2006/JP genomic RNA, complete genome.
ACCESSION AB447448
VERSION AB447448.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/Sakai2/2006/JP
ORGANISM Norovirus Hu/GII-4/Sakai2/2006/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Oka,T., Yokoyama,M., Nakamura,H., Mori,H., Ode,H.,
Hansman,G.S., Katayama,K., Kanda,T., Tanaka,T., Takeda,N. and
Sato,H.
CONSRTM and the Norovirus Surveillance Group of Japan
TITLE Identification of monomorphic and divergent haplotypes in the
2006-2007 norovirus GII/4 epidemic population by genomewide tracing
of evolutionary history
JOURNAL J. Virol. 82 (22), 11247-11262 (2008)
PUBMED 18768979
REFERENCE 2 (bases 1 to 7511)
AUTHORS Motomura,K. and Sato,H.
TITLE Direct Submission
JOURNAL Submitted (14-JUL-2008) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT These sequences were determined at our laboratory.
FEATURES Location/Qualifiers
source 1..7511
/organism="Norovirus Hu/GII-4/Sakai2/2006/JP"
/mol_type="genomic RNA"
/strain="Hu/GII-4/Sakai2/2006/JP"
/isolation_source="stool"
/db_xref="taxon:546972"
/country="Japan:Sakai"
CDS 3..5102
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAG70490.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARH
KQPPPRETPQRPPRPPTPELAKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
PELKQALKDVAIKNCQIVYGGCTYRLESDGKGDVKVDRVQSATVQTNNELVGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASNDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5083..6705
/codon_start=1
/product="VP1"
/protein_id="BAG70491.1"
/translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGTRTYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTKGDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG
SSTHRNEPQQWVLPDYSGRTAHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6705..7511
/codon_start=1
/product="VP2"
/protein_id="BAG70492.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFEFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKIKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGSPSTLS
NTSTLTSAYSDQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNV
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca
61 ccgcaaaatc ttcaagtgac ggagtgcttt ctagcatggc tgtcactttt aaacgagccc
121 tcggggcgcg gcacaaacag cctcccccga gggaaacacc acaaagacct ccacgaccac
181 ccaccccgga acttgccaaa aagatccctc ctcccccacc caacggggag gatgaactag
241 tggtttctta cagcgccaaa gatggcgttt ccggtttgcc tgagcttacc actgtccggc
301 agccggatga aaccaacacg gcgttcagtg ttcccccact caaccagagg gagaataggg
361 acgccaagga gccgctaacc ggaacaatcc tggaaatgtg ggacggggag atctatcatt
421 acggtctgta tgtggaacga ggccttgtac ttggtgtgca caaaccacca gctgccatca
481 gcctcgccaa ggttgagcta gcaccactct ctctgttttg gagaccagtg tatacaccac
541 agtatctcat ctctccagac actctcagga gactgcatgg agagtcgttc ccctacacag
601 cctttgacaa caactgctat gccttctgct gttgggtcct ggacctaaac gactcgtggt
661 tgtgcaggag gatgatccag aggacaactg gtttcttcag accttaccaa gactggaaca
721 ggaaacccct ccccaccatg gatgactcca aactgaagaa ggtggccaac atattcttgt
781 gtgcgctatc ttcactattc actaggccca tcaaagacat aataggaaag gtgagaccgc
841 ttaacatcct taacatcttg gcctcatgtg attggacttt tgcaggcata gtggaatctt
901 tgatcctctt ggcagagctc tttggagttt tctggacacc cccagatgtg tctgcgatga
961 tcgccccctt actaggtgac tacgaactgc aggggcccga ggaccttgca gtggaactcg
1021 ttccagtagt gatggggggg attggtttgg tgctaggatt caccaaagag aagatcggaa
1081 aaatgttgtc atctgctgca tccaccttaa gggcttgtaa agaccttggt gcatacggac
1141 tggaaatcct aaaattggtc atgaagtggt tcttcccaaa gaaagaggaa gcaaatgagt
1201 tggctatggt gaggtccatc gaggatgcgg tgctggacct cgaagcaatt gagaacaatc
1261 acatgactgc cctcctcaaa gacaaagaca gcttggcaac ctatatgaga acccttgacc
1321 tcgaggagga gaaggccagg aagctttcga ccaagtctgc ttcacctgac atcgtgggca
1381 caatcaacgc tctcctggcg agaatcgccg ctgcacgctc cctggtgcat cgggcgaaag
1441 aggaactctc cagcagacca agacctgttg ttgttatgat atcaggcagg ccagggatag
1501 ggaaaactca ccttgctagg gaactggcca agaaaatcgc agcttcgctt acaggggacc
1561 agcgtgtggg tctcatccct cgcaatggcg ttgaccactg ggatgcatat aagggggaaa
1621 gagtcgtcct atgggacgat tatggaatga gtaatcccat ccacgacgcc ctcaggttac
1681 aggaacttgc tgacacctgc cccctcacgc taaactgtga caggattgag aacaaaggaa
1741 aggtctttga cagtgatgcc ataatcatca ccactaatct ggccaaccca gcaccattgg
1801 actatgtcaa ctttgaagcg tgctcgaggc gcatcgactt cctcgtgtac gcagaagccc
1861 ctgaggtcga gaaggcaaag cgtgatttcc caggtcaacc tgacatgtgg aagaacgcat
1921 tcagttctga cttctcgcac ataaaactga cgctggctcc gcaaggtggc ttcgacaaga
1981 acggaaacac cccacacggg aaaggcgtca tgaaaaccct caccactggt tctctcatcg
2041 cccgagcatc agggctactc catgagaggt tagatgagta tgagctgcag ggcccaaccc
2101 ctaccacctt taactttgac cgcaacaagg tgcttgcgtt cagacagctt gctgccgaaa
2161 acaagtacgg gttgttggac acaatgagag ttggaaaaca gctcaaggat gtcaagacca
2221 tgccagagct caaacaagcg ctcaaagatg tcgcaatcaa gaattgtcag atagtgtatg
2281 gtggctgcac ttacaggctt gagtctgatg gcaagggtga tgtgaaagtt gacagagttc
2341 agagcgccac tgtacagacc aacaatgagc ttgtcggcgc cctacatcat cttaggtgtg
2401 ccagaatcag atattatgtc aagtgtgtcc aggaggccct gtattccatc atccaaattg
2461 ctggagctgc atttgtaacc acgcgcattg tcaagcgcat gaacatacaa gacctctggt
2521 ccaagccaca ggtggaggac acagaggaga ctgctagcaa tgatgggtgc ccaaaaccta
2581 aggatgacga cgagttcgtg gtctcatccg atgacatcaa aaccgagggc aagaaaggga
2641 agaacaagtc tggccgtggt aagaagcaca cagcattctc aagcaaaggt ctcagtgatg
2701 aagagtacga tgagtacaaa agaatcagag aagaaaggaa cggcaaatac tccatagagg
2761 aataccttca ggacagagat aagtattatg aggaggtggc catcgccagg gcgaccgaag
2821 aggacttctg tgaagaagaa gaggccaaga tccgacaaag gattttcagg ccaacaagga
2881 aacaacgcaa agaggagagg gcctctctcg gtttggtcac aggctctgaa atcaggaaga
2941 ggaacccaga cgacttcaag cctaaaggaa agctgtgggc tgatgatgac aggagtgttg
3001 actacaatga gagactcaat tttgaagccc caccaagcat ctggtcgagg atagtcaatt
3061 ttggttcggg ttggggcttt tgggtttccc ccagcctgtt cataacatca actcatgtga
3121 taccccaggg cgcacaggag ttctttggtg ttcccatcaa acaaattcag atacacaaat
3181 cgggtgaatt ctgtcgtttg aggtttccaa aaccaatcag aactgacgtg acaggcatga
3241 tcttagaaga aggtgcaccc gaagggaccg tggtcacact actcattaag aggccaactg
3301 gagaactcat gcccttggca gccagaatgg gaacccatgc aaccatgaag attcaagggc
3361 gcactgttgg aggtcaaatg ggcatgctcc taacaggatc caacgccaag agtatggacc
3421 tgggcaccac accaggtgac tgtggttgtc cctacattta caagaggggg aatgactatg
3481 tagtcattgg agtccacaca gctgccgccc gtggaggaaa cactgtcata tgtgccaccc
3541 aagggagcga gggagaagcc acacttgaag gcggtgacag caaggggacc tactgcggtg
3601 caccaatctt aggtccagga agtgccccga agctcagcac caagactaaa ttctggagat
3661 catccacggc accactccca cctggtacct atgagccagc ctacctcggc ggcaaggacc
3721 ccagagttaa gggtggccct tcattgcaac aagttatgag ggaccagctg aaaccattca
3781 ctgaacccag gggtaaacca ccaaaaccaa gtgtgttaga agctgccaag aaaaccatcg
3841 tcaatgtcct tgaacaaaca attgatccac ctcaaaaatg gtcatttgcg caggcatgcg
3901 catcccttga caagaccact tccagtggtc acccgcacca catgcggaaa aacgactgct
3961 ggaacgggga atcctttaca ggcaaattgg cagaccaggc ttccaaggcc aacctgatgt
4021 tcgaggaggg aaagaacatg actccagtct acacgggtgc gcttaaggac gagctggtca
4081 agactgacaa aatttatggc aagatcaaaa agaggcttct ctggggttcg gacctggcga
4141 ccatgatccg gtgcgctcga gcatttgggg gcctgatgga ggaactcaaa gcacattgtg
4201 tcacactacc tgtcagagtg ggtatgaata tgaatgagga tggtcctatc atctttgaga
4261 gacactctag atataaatat cattatgatg ctgattactc ccggtgggac tcaacacaac
4321 aaagagccgt gttagcagcg gctttagaaa tcatggtcaa gttctcccca gagccgcatc
4381 tggcccaaaa ggttgcagaa gaccttcttt ctcccagcgt gatggacgtg ggtgatttca
4441 aaatatcaat caatgagggt ctcccctccg gggtgccctg cacctcccaa tggaattcca
4501 tcgcccactg gctcctcact ctatgtgcac tctctgaggt tacaaacctg tcccctgaca
4561 ttatccaggc caactctctc ttttctttct acggtgatga tgaaattgtg agcacagaca
4621 taaaattgga cccagaaaag ctgacagcaa aactcaagga atacgggtta aaaccgaccc
4681 gccctgacaa gactgaggga ccccttgtca tctctgaaga cctgaatggc ctaaccttcc
4741 tgcggagaac cgtgacccgc gacccagcag gctggtttgg aaagttggaa cagagttcaa
4801 tactcagaca aatgtattgg actagaggcc ccaaccatga agacccatct gaaacaatga
4861 taccacactc ccagaggccc atacaattga tgtctttgct gggtgaggct gcactccacg
4921 gcccagcatt ctacagcaaa atcagcaaac tggtcattgc agagttgaag gaaggtggca
4981 tggattttta cgtgccaaga caagagccaa tgttcagatg gatgagattc tcggatctga
5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat
5101 gacgccagcc catctgatgg gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt
5161 atggctttgg agcccgttgt tggtgccgct attgcggcgc ctgtagcggg ccaacaaaat
5221 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtggaga gttcacagta
5281 tcccctagaa acgctccagg tgaaatacta tggagcgcgc ccttaggccc tgatctgaat
5341 ccataccttt ctcacctggc cagaatgtac aatggttatg caggtggttt tgaagtgcag
5401 gtaatcctcg cggggaacgc gttcaccgcc gggaaaatca tatttgcagc agtcccacca
5461 aatttcccaa ctgaaggctt gagccccagc caggtcacta tgttccccca cataatagta
5521 gatgttaggc aattggaacc tgtgttgatc cccttacctg atgttaggaa caatttctac
5581 cattacaatc aatcaaacga ctccaccatt aaattgatag caatgctgta cacaccactt
5641 agggctaata atgctgggga tgatgtcttc acagtctctt gtcgagtcct cacgaggcca
5701 tcccccgatt ttgatttcat atttctggtg ccacccacag ttgagtcaag aaccaaacca
5761 ttcaccgtcc caattttaac tgttgaggaa atgaccaatt caagatttcc cattcctttg
5821 gaaaaattgt tcacgggtcc cagcagtgcc tttgtcgtcc aaccacaaaa tggcaggtgc
5881 acgactgatg gcgtgctctt aggcactacc caactgtccc ccgtcaacat ctgcaccttc
5941 agaggagatg tcacccacat tccaggtact cgtacttaca gaatgaattt ggcttctcaa
6001 aattggaaca attatgaccc aacagaagaa atcccagccc ctctgggaac tccagatttc
6061 gtgggaaaga tccaaggcat gctcacccaa accacaaagg gagacggctc gacccgcggt
6121 cacaaagcta cagtgagcac tgggagtgtt gacttcactc caaagctggg cagcgttcag
6181 ttcgccactg acacagacaa tgattttgaa actggccaaa acacaaggtt caccccagtc
6241 ggtgtcatcc aggatggtag tagtacccac agaaatgaac cccaacaatg ggtactccca
6301 gattactcag gtagaactgc tcataatgta cacctggccc ctgccgtagc ccccactttt
6361 ccgggtgagc aacttctttt cttcagatct actatgcccg gatgcagtgg gtatcccaat
6421 atggatttgg attgtctact cccccaggaa tgggtgcagc acttctacca agaggcagcc
6481 ccatcacaat ctgacgtggc tttgttgaga tttgtgaatc cagacacagg tagggttctg
6541 tttgagtgca agcttcataa agcaggctat gtcacagtgg ctcacactgg ccagcatgat
6601 ttggtcatcc cccccaatgg ctactttaga tttgattcct gggtcaacca gttctacaca
6661 cttgccccca tgggaaatgg agcggggcgt agacgtgcat tataatggct ggagctttct
6721 ttgctggatt ggcatctgat gtccttggct ctggacttgg ttccctgatc aatgctgggg
6781 ctggggccat caaccaaaaa gttgaatttg aaaataacag aaaattgcaa caagcttcct
6841 tcgaatttag cagcaatcta caacaggctt cctttcaaca tgacaaagag atgctccaag
6901 cacaaattga ggccactaaa aagttacagc agggtatgat gaaaatcaaa caggcaatgc
6961 tcctagaggg tggattctct gaaacagatg cggcccgtgg ggcaatcaac gcccccatga
7021 caaaggcttt ggactggagc ggaacaaggt actgggctcc tgatgctaga accacaacat
7081 acaatgcagg ccgtttttcc acccctcaac cttcgggggc attgccagga agaactaatc
7141 ccagggctac tgtacccgct cggggctccc ccagcacact ttctaatact tccactctta
7201 cttctgccta ttcagatcaa actgtttcaa cgagacttgg ttctacagct ggttctggca
7261 ccagtgtctc gagtctcccg tcaactgcaa ggactaggag ttgggttgag gatcaaaaca
7321 ggaatttgtc acctttcatg aggggggctc acaacgtatc gttcgtcacc ccaccatcta
7381 gtagatcctc tagccaaggc acagtctcga ccgtgcccaa agaagttttg gactcctgga
7441 ctggcgcttt caacacgcgc aggcagcctc tcttcgctca cattcgtaag cgaggggagt
7501 cacgggtgta a
//