Typing tool
|
Complete norovirus genomes
AB447433 | GII.4 Yerseke | ||
---|---|---|---|
GII.P4 Yerseke |
ORF1: 3..5102 ORF2: 5083..6705 ORF3: 6705..7502LOCUS AB447433 7502 bp RNA linear VRL 05-NOV-2008 DEFINITION Norovirus Hu/GII-4/Aomori2/2006/JP genomic RNA, complete genome. ACCESSION AB447433 VERSION AB447433.1 KEYWORDS . SOURCE Norovirus Hu/GII-4/Aomori2/2006/JP ORGANISM Norovirus Hu/GII-4/Aomori2/2006/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Motomura,K., Oka,T., Yokoyama,M., Nakamura,H., Mori,H., Ode,H., Hansman,G.S., Katayama,K., Kanda,T., Tanaka,T., Takeda,N. and Sato,H. CONSRTM and the Norovirus Surveillance Group of Japan TITLE Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history JOURNAL J. Virol. 82 (22), 11247-11262 (2008) PUBMED 18768979 REFERENCE 2 (bases 1 to 7502) AUTHORS Motomura,K. and Sato,H. TITLE Direct Submission JOURNAL Submitted (14-JUL-2008) Contact:Kazushi Motomura National Institute of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan COMMENT These sequences were determined at our laboratory. FEATURES Location/Qualifiers source 1..7502 /organism="Norovirus Hu/GII-4/Aomori2/2006/JP" /mol_type="genomic RNA" /strain="Hu/GII-4/Aomori2/2006/JP" /isolation_source="stool" /db_xref="taxon:546957" /country="Japan:Aomori" CDS 3..5102 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAG70445.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQLPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREM AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM PELKRALKNISIKKCQIVYSGCTYILESDGKGDVKVDRVQSASVQTNNELTGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEELAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWTFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5083..6705 /codon_start=1 /product="VP1" /protein_id="BAG70446.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6705..7502 /codon_start=1 /product="VP2" /protein_id="BAG70447.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLGAAVPARGSSSTPS NSSSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAYNISFV TPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca 61 ccgcaaaatc ttcaagtgac ggagtgcttt ctagcatggc tgtcactttt aaacgagccc 121 tcggggcgcg gcctaaacag cttcccccga gggaaatacc acaaagaccc ccacgaccac 181 ctactccaga actggttaaa aatattcccc ctcccccgcc caacggagag gatgaaatag 241 tggtttctta tagtgtcaaa gatggtgttt ccggtttgcc tgacctttcc accgtcaggc 301 aaccggaaga atctaacacg gcctttagtg tccctccact caatcagagg gagaatagag 361 atgctaagga gccactgact gggacaattc tggaaatgtg ggatggagaa atctaccatt 421 atggcctgta tgtggagcga ggtcttgtac taggtgtgca caaaccacca gctgccatta 481 gccttgctag ggtcgagcta gcaccactct ccttgtactg gagacctgtg tacactcccc 541 agtacctcat ctctccagac actctcaaga aattacacgg agaaacgttc ccctacacag 601 cctttgacaa caattgttat gccttttgtt gctgggtcct ggacctaaat gactcgtggc 661 tgagcaggag aatgatccag agaacaactg gtttcttcag gccctaccaa gattggaata 721 ggaaacccct ccccactatg gatgactcca aattaaagaa ggtagctaac atattcctgt 781 gtgctctgtc ttcgctattc accaggccca taaaagatat aatagggaag ctaaggcctc 841 ttaacatcct caacatctta gcctcatgtg attggacttt tgcaggcata gtggagtccc 901 tgatactctt ggcagaactc tttggagttt tttggacacc cccagatgtg tctgcgatga 961 ttgccccctt actcggtgac tacgagctac aaggacctga ggaccttgca gtggagctcg 1021 tccccgtagt gatgggggga attggtctgg tgctaggatt caccaaggag aagattggga 1081 aaatgttgtc atctgctgca tccaccttga gagcttgtaa agaccttggt gcatatggac 1141 tagagatcct aaagttggtc atgaagtggt tcttcccgaa gaaggaggaa gcaaatgaat 1201 tggctatagt gagatctatc gaggatgcag tcctggatct cgaggcaatt gaaaacaacc 1261 atatgaccac cttgctcaaa gacaaagaca gtctggcaac ctatatgaga acccttgacc 1321 ttgaggagga gaaagccagg aaactctcaa ccaaatctgc ctcacctgac atcgtgggca 1381 caatcaacgc ccttctggcg agaatcgctg ctgcacgctc tctggtgcac cgagcgaagg 1441 aggaactttc cagcagacca agacctgtag tattgatgat atcaggcaga ccaggaatag 1501 ggaagaccca cctcgctagg gaaatggcta agagaatcgc ggcctccctc acaggagacc 1561 agcgtgtagg cctcgtccca cgcaatggcg tcgaccactg ggatgcgtac aagggggaga 1621 gggtcgtcct atgggacgat tatgggatga gcaatcccat tcacgatgcc ctcaggttgc 1681 aagaactcgc tgacacttgc cccctcactc taaactgtga caggattgag aataaaggaa 1741 aggtctttga cagcgatgtc atcattatca ccactaatct ggccaaccca gcaccactgg 1801 actatgtcaa ctttgaagca tgttcgaggc gcatcgactt cctcgtgtat gcagaagccc 1861 ctgaagtcga aaaggcgaag cgtgacttcc caggccaacc tgacatgtgg aagaacgctt 1921 tcagttctga tttctcacac ataaaactaa cattggcccc acagggtggc ttcgacaaga 1981 acgggaacac cccacacgga aggggcgtca tgaagactct caccactggc tcccttattg 2041 cccgggcatc agggctactc catgagaggt tagatgaatt tgaactacag ggcccaactc 2101 tcactacctt caatttcgat cgcaataaag tgcttgcctt tagacaactt gctgctgaaa 2161 acaaatatgg gttgatggac acaatgagag ttgggagaca gctcaaggat gtcagaacca 2221 tgccagaact caaacgagca ctcaagaata tctcaatcaa gaagtgccag atagtgtata 2281 gtggttgcac ctacatactt gagtctgatg gcaagggcga tgtgaaagtt gacagagttc 2341 agagcgcctc cgtgcagacc aacaatgagc tgactggtgc cctgcaccat ttgaggtgcg 2401 ccaggatcag atactatgtc aagtgtgtcc aggaggccct gtattccatc atccaaattg 2461 ctggggctgc gtttgtcacc acgcgcatcg tcaagcgcat gaacatacaa gacctatggt 2521 ccaagccaca agtggaaaac acagaggaga ccaccagcaa ggacgggtgc ccaaaaccca 2581 aagatgatga ggagtttgtc atttcatcag acgacatcaa aactgagggt aagaaaggga 2641 agaacaagac tggccgcggc aagaagcaca cagccttttc aagcaaaggt ctcagtgatg 2701 aagagtacga tgagtacaag aggattagag aagaaaggaa tggcaagtac tccatagaag 2761 aataccttca ggacagggac aaatactatg aggagttggc cattgccagg gcgactgagg 2821 aagacttctg tgaagaggag gaggccaaga tccggcaaag gatcttcagg ccaacaagga 2881 aacaacgcaa ggaggaaaga gcttctctcg gtctggtcac aggttctgaa attaggaaaa 2941 gaaacccaga tgatttcaaa cccaagggga aactgtgggc tgacgatgat aggagtgtgg 3001 actataatga gaaactcagc tttgaggccc caccaagcat ctggtcgagg atagtcaact 3061 ttggctcagg ttggggattc tgggtctccc ccagtctgtt cataacatca acccatgtca 3121 taccccaggg cgcaaaggag ttctttggag tccccatcaa acaaattcag gtacacaagt 3181 caggcgagtt ctgtcgcttg agattcccaa aaccaatcag gactgatgtg acaggcatga 3241 tcttagaaga aggcgcaccc gagggcaccg tggtcacact actcatcaaa aggtccactg 3301 gggaactcat gcccctagca gctagaatgg ggacccatgc aaccatgaag atccaagggc 3361 gcaccgttgg aggccaaatg ggcatgcttc tgacaggatc caacgccaaa agcatggatc 3421 tgggtactac accaggtgat tgtggctgtc cctacatcta caagagagga aatgactatg 3481 tggtcattgg agtccacacg gctgccgctc gtgggggaaa cactgtcata tgtgccaccc 3541 aggggagtga gggagaggct acacttgaag gtggtgacaa caaggggacg tactgtggtg 3601 caccaatcct aggcccaggg agtgccccaa aacttagcac caagaccaaa ttctggagat 3661 cgtccacggc atcactccca cctggcacct atgaaccagc ctatcttggt ggcaaggacc 3721 ctagagtcaa gggtggccct tcactgcagc aagtcatgag ggaacagttg aagccattca 3781 cagagcccag gggcaagcca ccaaagccaa gtgtgttaga agctgccaag aagaccatca 3841 tcaatgtcct tgagcaaaca attgatccac ctgagaaatg gacattcgca caagcttgcg 3901 cgtcccttga caagaccact tccagtggcc atccgcacca tatgcggaaa aacgactgct 3961 ggaacgggga gtccttcaca ggcaagctag cagaccaggc ttccaaggcc aatctgatgt 4021 ttgaagaagg gaagaacatg accccagtct acacagctgc gctcaaggat gaattagtta 4081 aaactgacaa aatttatggt aagatcaaga agaggcttct ctggggctcg gacttggcga 4141 ccatgatccg gtgtgctcga gcattcggag gcctaatgga tgaactcaaa gcacactgtg 4201 tcacacttcc cattagagtt ggtatgaata tgaatgagga tggccccatc atcttcgaga 4261 ggcattccag gtacacatac cactatgatg ctgattactc tcgatgggat tcaacacaac 4321 agagagccgt gttggcagca gctctagaaa tcatggttaa attctcccca gaaccacatt 4381 tggctcaggt agtcgcggaa gaccttcttt ctcctagtgt ggtggacgtg ggcgatttca 4441 caatatcaat caacgagggt cttccctctg gagtgccctg cacctcccaa tggaactcca 4501 tcgcccattg gcttctcact ctctgtgcgc tctctgaagt tacaaacttg tcccctgata 4561 ccatacaggc taattccctc ttctcttttt atggtgatga tgaaattgtt agcacagata 4621 taaaattgga cccagagaaa ttgacaacaa agctcaggga atatgggtta aaaccaaccc 4681 gccctgacaa aactgaagga ccccttgtca tctctgaaga cttgaatggc ctgactttcc 4741 tgcggagaac tgtgacccgc gacccagctg gttggtttgg aaaactagag cagagttcaa 4801 tactcaggca aatgtactgg actaggggct ccaaccatga agacccatct gaaacaatga 4861 ttccacactc ccaaagaccc atacaattga tgtccctact gggggaggcc gctcttcacg 4921 gcccagcatt ctacagcaaa atcagcaagt tagtcattgc agagctaaaa gaaggtggca 4981 tggattttta cgtgcccaga caagagccaa tgttcagatg gatgagattc tcagatctga 5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgagt 5101 gacgccaacc catctgatgg gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt 5161 atggctttgg agcccgttgt tggtgccgct attgcggcac ctgtagcggg ccaacaaaat 5221 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtggaga gtttacagta 5281 tcccctagaa acgctccagg tgaaatacta tggagcgcgc ccttgggccc tgatttgaat 5341 ccctaccttt cccatttggc cagaatgtac aatagttatg caggtggttt tgaagtgcag 5401 gtaatccttg cggggaacgc gttcaccgcc ggaaaaatca tatttgcagc agtcccacca 5461 aatttcccaa ctgaaggctt gagccccagc caggtcacta tgttccccca tataatagta 5521 gatgttaggc aactggaacc tgtgttgatt cctttacccg atgttaggaa taatttctat 5581 cactacaatc aatcaaacga ccccaccatc aaattgatag caatgttgta cacaccactt 5641 agggctaata atgctgggga cgatgtcttc acagtttctt gtcgggttct cacgagacca 5701 tcccccgatt ttgatttcat atttttagtg ccacccacag ttgagtcaag aactaaacca 5761 ttctctgtcc caattttaac tgttgaggag atgaccaatt caagattccc cattcctttg 5821 gaaaagttgt tcacgggtcc cagcagtgcc tttgttgttc aaccacaaaa tggcaggtgc 5881 acgactgatg gcgtgctctt aggtactacc caactgtctc ctgtcaacat ctgcaccttc 5941 agaggggatg tcacccacat tgctggtact caagaataca caatgaatct ggcctcccaa 6001 aactggaaca attatgaccc aacagaagaa atcccagccc ctctgggaac tccagatttc 6061 gtgggtaaga tccaaggcgt gctcacccaa accacaagga gggatggctc gacccgcggt 6121 cacaaagcca cagtgagcac tggaagtgtc cacttcaccc caaagctggg cagaattcaa 6181 ttctccactg atacaagcaa tgattttgaa actggccaaa acacgagatt caccccagtc 6241 ggtgttgtcc aggatggtag taccacccac caaaatgaac cccaacaatg ggtactccca 6301 aattattcag gtagagatag tcacaatgtg cacctagccc ctgccgtggc cccctctttt 6361 ccgggtgagc aacttctttt cttcaggtcc actatgcccg gatgcagcgg gtatcccaac 6421 atgaatttgg attgtctact cccccaggag tgggtgcagc acttctacca agaggcagcc 6481 ccagcacaat ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttttg 6541 tttgagtgta agcttcataa atcaggctat gtcacagtgg ctcacactgg ccaacatgat 6601 ttagttatcc cccccaatgg ctattttaga tttgattcct gggtcaacca gttctacaca 6661 cttgccccca tgggaaatgg gacggggcgt agacgtgcat tataatggct ggagctttct 6721 ttgctggatt ggcatctgat gtccttggct ctggacttgg ttccctaatc aatgctgggg 6781 ctggggccat caaccaaaaa gttgaatttg aaaataacag aaagttgcaa caagcttcct 6841 tccaatttag cagcaaccta caacaggctt cctttcaaca tgataaagag atgctccaag 6901 cacaaattga ggccaccaaa aagttgcaac aggaaatgat gaaagttaaa caggcaatgc 6961 tcctagaggg tgggttctct gagacagatg cagcccgtgg ggcaatcaac gcccccatga 7021 caaaggcttt ggactggagc gggacaaggt actgggctcc cgatgctagg actacaacat 7081 acaatgcagg ccgcttttcc acccctcaac cctcgggggc actgccagga agaactaatc 7141 ttggggctgc tgtccccgcc cggggctcct ctagtacgcc ttctaactct tcttctgtgt 7201 actcaaatca aactgcttca acgagacttg gttctacagc tggttctggt accagtgtct 7261 cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaaat aggaatttgt 7321 cacctttcat gaggggggcc tacaacatat cgtttgtcac cccaccatct agcagatcct 7381 ctagccaagg cacagtctca accgtgccta aagaagtttt ggactcctgg actggcgctt 7441 tcaacacgcg caggcagcct ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt 7501 aa //