Typing tool
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Typing tool
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Complete norovirus genomes
| AB365435 | GII.3 | |
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| GII.P21 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS AB365435 7627 bp RNA linear VRL 25-APR-2008
DEFINITION Norovirus Hu/Texas/TCH04-577/2004/US genomic RNA, complete genome.
ACCESSION AB365435
VERSION AB365435.1
KEYWORDS .
SOURCE Norovirus Hu/Texas/TCH04-577/2004/US
ORGANISM Norovirus Hu/Texas/TCH04-577/2004/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Estes,M.K. and Atmar,R.L.
TITLE New Classification System of the Noroviruses and Sapoviruses
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7627)
AUTHORS Katayama,K., Estes,M.K. and Atmar,R.L.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2007) Contact:Kazuhiko Katayama National
Institute of Infectious Diseases, Virology II; Gakuen 4-7-1,
Musashi-murayama 2080011, Japan
FEATURES Location/Qualifiers
source 1..7627
/organism="Norovirus Hu/Texas/TCH04-577/2004/US"
/mol_type="genomic RNA"
/strain="Hu/Texas/TCH04-577/2004/US"
/isolation_source="Human stool"
/db_xref="taxon:479952"
/country="USA:Texas, Houston"
/note="genogroup II"
CDS 5..5104
/note="Nonstructure proteins, N-terminal, NTPase, 3A-like
protein, VPg, Protease, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="BAG30938.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSNMAVTFKRALGARP
KQPPPRDKPPRPPRPPTPELVKTIPPPPPNGEDEPTISYNVKEGVSGLPELSTVTQPE
ESSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKVKKVANVILCALSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKDETNELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLSRIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIASSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDTFKPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLVDTMRVGSQLKNVKTM
TELKQALKNISVKKCQLVYGGGTYTLESDGKGSVHVEKVKNTSVQTNNELSGALHHLR
CARIRYYVKCVQEALYSILQIAGAAFITTRIAKRMNIQNLWSKPQVEDLEETSNEEGC
PKPKNDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGTQEFFGVPTKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAMLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQRWTYAQACASLDKTTSSGHPHHMRKNECW
NGETFTGKLADQASRANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLR
EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6731
/codon_start=1
/product="VP1"
/protein_id="BAG30939.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSARQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFMGVLTRSTSRASDQADTATPRLFNYYWHIQLDNPNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFHQNQP
TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6731..7495
/codon_start=1
/product="VP2"
/protein_id="BAG30940.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQASKTTPSSGSSVRSNSTQVTSLSS
YSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESKV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
61 caacgcaaaa tcttcaagtg acggggtatt atctaatatg gctgtcactt tcaaacgagc
121 cctcggggcg cggcctaaac aaccgccccc gagggacaag ccaccaagac ccccaaggcc
181 acccacacca gagttggtta agacaatccc ccctccccca cccaacgggg aggacgagcc
241 aaccatttct tacaacgtca aagagggtgt ctctggtttg cctgaactct caacggtcac
301 ccaaccggaa gagagctcta cggcattcag cgttccccct cttagtcaga gggagaacag
361 agatgcaaag gaacccttga ctggaaccat cctggagatg tgggacgggg agatctacca
421 ttatggcttg tacgtggaac gaggactggt gctcggtgta cacaaaccac cagcagccat
481 cagccttgct aaggttgagc tgaccccttt gtctttgtat tggagaccag tgtacacccc
541 acagtacctc atttcccctg acactctcag aaagttgcat ggggagacgt tcccttacac
601 agcctttgac aacaactgct atgccttctg ctgttgggtt cttgacttga acgattcatg
661 gctgagcaga aggatgatac agaggacaac aggcttcttt cgaccctacc aggactggaa
721 caggaaaccc ctccccacga tggatgactc caaagtgaag aaggtggcca atgttatcct
781 ctgtgctctc tcatcattgt ttactagacc aattaaggac attattggga agttgaaacc
841 cctaaacatc ctcaacatcc tagccacatg tgattggact tttgcaggca tagtagaatc
901 cctgatcctc ttggctgaac tgtttggagt tttctggaca cccccagatg tgtctgcaat
961 gatcgctccc ttactgggtg attatgagct acaggggccc gaggacctcg ctgtggaact
1021 cgtacccgta gtgatgggag ggataggttt ggtgctggga ttcaccaaag agaaaatcgg
1081 caaaatgctt tcatctgctg cttcaaccct gagggcatgt aaagatcttg gtgcatatgg
1141 gctggaaatc ctcaagttgg tcatgaaatg gtttttccca aagaaagacg agacaaacga
1201 attggctatg gtgagatcca tcgaggatgc agtgctagac ctcgaggcca ttgagaacaa
1261 ccatatgaca gctctactca aggataagga cagccttgca acctacatga ggactcttga
1321 cttggaggag gagaaggcga ggaagctgtc caccaagtct gcctcaccgg acattgtggg
1381 cacgatcaac gccctactgt caaggattgc agctgcccgg tctctagtac acagggctaa
1441 ggaggaactg tcaagtaggc cccgaccggt cgttgtgatg atttcaggga gaccaggtat
1501 agggaaaacc catctagcta gagagttggc aaagaagatc gcctcctcac tcacaggtga
1561 ccagagggtg ggcctcatcc cacgcaacgg agttgaccac tgggatgcat acaaaggtga
1621 aagagtcgtt ctctgggacg actacgggat gagcaaccct atccacgacg cccttcgact
1681 ccaggagctt gctgacacct gtcccctcac acttaactgt gacaggattg agaacaaagg
1741 caaagtcttt gacagtgacg ccataataat aactaccaat ttagccaacc cagcgccact
1801 ggactatgtc aactttgaag cttgctcaag acgtatagat ttcctcgtct atgctgatgc
1861 ccctgaagtt gagaaggcta aacgggactt cccaggccag ccagatatgt ggaaagacac
1921 cttcaaacct gacttctcac acataaaact gacattagcc ccacaaggag gttttgataa
1981 gaatggcaac acccctcatg ggaagggtgt tatgaagacc ctcactgcta gttctctcgt
2041 tgcccgagca tcagggctcc tccacgagag actagacgag tatgagctgc aaggcccaac
2101 tcccacaaca ttcaacttcg accgtaacaa ggtgcttgct tttaggcaac ttgctgctga
2161 gaacaagtac ggtcttgttg acacaatgag ggtcggatca cagctcaaga atgtcaaaac
2221 catgacagaa ctcaaacagg ctctcaagaa catctcagtc aagaaatgcc agcttgtgta
2281 tggcgggggc acgtacacac ttgaatctga tggcaaaggc agtgtgcatg tcgagaaggt
2341 gaagaacacc agtgtgcaaa ctaacaacga gctctccggg gctttgcacc atctcaggtg
2401 tgccaggatc aggtattatg tcaagtgtgt ccaggaagct ctctactcca tcttgcaaat
2461 tgccggggct gcattcatta ccacgcgcat tgcaaagcgc atgaatatac aaaacctctg
2521 gtccaaacca caagtggaag atttggagga gactagcaac gaggagggtt gtccaaaacc
2581 taaaaatgat gaggaatttg ttatctcctc tgatgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaaa actggccgtg gcaagaagca cacagccttt tccagcaaag gcctcagtga
2701 tgaggagtac gatgagtata agagaatcag ggaagagagg aatggcaagt actccataga
2761 ggaataccta caggacagag acagatacta tgaggaggtg gccatagcca gagcaactga
2821 ggaagatttc tgtgaagaag aggaggctaa aatccggcaa aggattttca gaccaacaag
2881 gaaacaacgt aaagaggaaa gggcctctct cggtttggtc acaggttctg agatcagaaa
2941 gagaaaccca gatgacttca agcccaaagg gaaactatgg gccgacgatg acaggagtgt
3001 tgactataac gagaaactta gtttcgaggc tccaccaagc atttggtcac gaatagtcaa
3061 ctttggttca gggtggggtt tttgggtctc gcctagcctc ttcataacat caacccatgt
3121 cattccccag ggcacacagg agttctttgg agtgcccacc aaacagatac aaattcacaa
3181 atcaggtgag ttctgccggc ttaggttccc aaaaccaatc aggacagatg tcacgggcat
3241 gatcttggag gaaggcgctc cagaaggcac tgttgccaca cttctcatca agagaccaac
3301 tggggaactc atgcccttgg cagccagaat gggcacccac gcgaccatga aaattcaggg
3361 tcgcactgtt ggtggacaga tgggcatgct actcacaggg tctaacgcta agagcatgga
3421 tttgggcaca actcctggcg attgtggttg tccctatatc tacaagagag ggaacgacta
3481 cgtggtcatt ggagttcata ccgccgccgc tcgtggagga aacaccgtca tctgtgcaac
3541 ccagggaagc gagggtgagg ccatgctaga aggtggtgac aacaaaggaa cttactgtgg
3601 agcaccaata ttaggccctg gaaatgcccc caaactcagc accaaaacca aattctggag
3661 gtcttccacc acccccctgc cacccggaac ctatgaacca gcttatctgg gtggcaagga
3721 ccctagagtg aaaggtggtc cctcactgca acaggttatg agggatcaac taaaaccatt
3781 cactgagccc agaggcaaac cacccaaacc aagtgtgcta gaagctgcca agaagactat
3841 aatcaatgtg cttgaacaga caatagaccc accccaaaga tggacatacg cacaggcgtg
3901 tgcatcacta gacaagacca cttccagcgg ccaccctcac cacatgcgga agaacgagtg
3961 ctggaatggg gagactttca cgggaaaact ggcagaccaa gcatcaaggg ctaacctaat
4021 gtatgaggaa ggaaagaaca tgaccccagt gtacacagga gctttgaagg atgagctagt
4081 caagactgat aagatctatg ggaagatcaa aaagagactc ctgtgggggt cagacttgtc
4141 aaccatgata cggtgtgcac gagccttcgg tggactaatg gacgagctca aggcccattg
4201 cgttacacta ccagtcaggg ttggcatgaa catgaatgag gatggaccca taatatttga
4261 gaaacattcc agatacaggt atcattatga tgcagattac tcccgctggg attcaacaca
4321 acaaagagca gtgctggctg cagctctgga aataatggtc aaattctcat cagaacctca
4381 tctggcccaa gtagttgcag aagacctctt gtcccccagt gtgatggacg tgggtgattt
4441 caagatatca atcaacgagg ggttgccctc tggtgtacct tgcacctcac aatggaactc
4501 cattgcccac tggctcctga cactatgtgc gctgtctgaa gtcactgacc tgtcccctga
4561 catcatccag gcaaactccc tattctcctt ttatggtgat gatgaaatag taagcacaga
4621 catcaaattg gacccagaga aattgacaac aaaattgagg gaatatgggc taaaaccaac
4681 ccgtcctgat aaaacagaag gacccttaat tatctctgaa gatttggatg gcctgacctt
4741 cttacggaga acggtgaccc gtgatccggc tgggtggttt ggcaaactgg accaaagttc
4801 aatactcagg cagatgtact ggaccagggg accaaaccat gaggacccct ttgaaacaat
4861 gataccacac tcccaaagac ccatacaact gatgtcatta ctgggtgaag ctgcattgca
4921 tggcccatca ttctacagta aaattagcaa attggtcatc tcagaattga aagagggtgg
4981 aatggatttt tacgtgccca gacaagaacc aatgtttagg tggatgagat tctcagattt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccac tccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc acccctcact ggccagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagtttacag
5281 tatcccctag gaattcccct ggtgaagtgc ttcttaattt ggaattgggc ccagaaataa
5341 atccctattt ggcacatctc gctagaatgt ataatggtta tgcaggtgga tttgaagtgc
5401 aggtagtcct agctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaatttccc aattgataat ctaagcgcac gacagattac aatgtgccca catgtgattg
5521 tggatgtcag acagttggaa ccagtcaacc tcccgatgcc tgacgttcgc aacaatttct
5581 ttcattataa ccaaggatct gattcgagat tgcgcttaat tgcaatgctg tacacacctc
5641 ttagggcaaa taattctggg gatgatgttt ttactgtgtc ttgtagagtg ctgactaggc
5701 ctagccctga cttctcattc aatttccttg tgccacccac tgtggagtca aagacaaaac
5761 ccttcaccct ccctattctg actatctctg aaatgtccaa ttctaggttt ccagtgccga
5821 ttgactctct gcacaccagc ccaactgaga atattgttgt ccagtgccaa aatgggcgcg
5881 tcactcttga tggtgagctg atgggcacca cccaactctt acctagtcaa atctgtgctt
5941 tcatgggcgt gctcaccagg tcaacaagca gggccagtga tcaggccgac acagcaaccc
6001 ctaggttgtt taattattat tggcatatac aattggataa tccaaatggg actccttatg
6061 atcctgcaga agacatacca ggccccctag ggacaccaga tttccggggc aaagtctttg
6121 gcgtggccag ccagagaaac cccgacagca caactagagc acatgaagca aaggtggaca
6181 caacagctgg tcgtttcacc ccaaaactag gctcattaga gatatccact gaatctgatg
6241 actttcatca aaaccaacca acaagattca ccccagttgg cattggggtt gacaatgaag
6301 cagactttca acagtggtct ttacccgact attctggtca gttcacccac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gagagcagct ccttttcttc cgctcacagt
6421 taccatcctc tggtgggcga tccaacggga ttctagactg cctggtccct caagagtggg
6481 ttcagcactt ctaccaagaa tcggccccct ctcaaactca agtggccctg gttaggtatg
6541 tcaaccctga cactggcaga gtattatttg aggccaagct gcacaaatta ggtttcatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtccctcc aaatggatac tttaggtttg
6661 aatcttgggt gaacccattt tacacacttg cccccatggg aactgggaat gggcgtagaa
6721 ggattcaata atggctggag cttttatagc aggattagct ggtgatatac tcacaaatac
6781 tgtaggatct ttagttaatg caggggctaa tgccattaat caaaaagttg attttgaaaa
6841 taataaatat ttacaaaatg cttcctttaa tcatgataag gaaatgttaa atgcacaaat
6901 tgaggcaaca aagaggttac aggctgacat gattgctatc aaacaagggg ttttgaccgc
6961 tggcggcttc tcccccactg atgcagcccg cggggcaatt aacgccccca tgacaaaagt
7021 cctagattgg aatgggacga ggtactgggc accaaatgcc acctccacaa cctcgatgtc
7081 gggtggcttc acaaatcagg ctgtgcacag aaccacgcca aattttaaaa cgaaccaggc
7141 ttccaaaacc acacccagca gtgggtcttc agtgaggtca aattcaaccc aagtcactag
7201 cctgagctca tactcgtccg ggtcgtctcg atccagcggg tctacagttg ttagctcatt
7261 accatcctct aacaggacta gggactgggt caaccaacaa aattttaatt tggaaccaca
7321 catgcctggg tctcttagga cagcttttgt cactccacca tctagtacag cctctagttc
7381 aggcacggtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgttcaatac
7441 gcgcagacag ccgctattcg cacaccttcg aagaaggggg gagtcaaaag tttagtgaaa
7501 agattatttt aaatttgatt taaattggat ttgatttgga atcttttaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
7621 aaaaaaa
//