Typing tool
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Typing tool
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Complete norovirus genomes
| AB220922 | GII.4 Asia | |
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| GII.P12 |
ORF1: 1..5078
ORF2: 5059..6681
ORF3: 6681..7487
LOCUS AB220922 7533 bp RNA linear VRL 14-JUL-2016
DEFINITION Norovirus Hu/Sakai/04-179/2005/JP genes for non structural
polyprotein, capsid protein, minor structural protein, partial and
complete cds.
ACCESSION AB220922
VERSION AB220922.1
KEYWORDS .
SOURCE Norovirus Hu/Sakai/04-179/2005/JP
ORGANISM Norovirus Hu/Sakai/04-179/2005/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Okada,M., Tanaka,T., Oseto,M., Takeda,N. and Shinozaki,K.
TITLE Genetic analysis of noroviruses associated with fatalities in
healthcare facilities
JOURNAL Arch. Virol. 151 (8), 1635-1641 (2006)
PUBMED 16521046
REFERENCE 2 (bases 1 to 7533)
AUTHORS Okada,M.
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2005) Mineyuki Okada, Chiba Prefectural Institute
of Public Health, Division of Virology; 666-2, Nitona-Cho,
Chiba-Shi, Chuo-Ku, Chiba 260-8715, Japan
(E-mail:m.okd4@mc.pref.chiba.jp, Tel:81-43-266-6723,
Fax:81-43-265-5544)
FEATURES Location/Qualifiers
source 1..7533
/organism="Norovirus Hu/Sakai/04-179/2005/JP"
/mol_type="genomic RNA"
/strain="Hu/Sakai/04-179/2005/JP"
/isolation_source="stool"
/db_xref="taxon:336620"
/geo_loc_name="Japan"
CDS <1..5078
/codon_start=3
/product="non structural polyprotein"
/protein_id="BAE98193.1"
/translation="SAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARHKQPPPREM
PQRPPRPPTPELAKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDETNTAFSV
PPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAP
LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQ
RTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILN
ILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV
GTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL
DEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMPELKQALK
NVAIKNCQIVYGGCTYRLESDGKGDVKVDRVQNAIVQTNNELAGALHHLRCARIRYYV
KCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASNDGCPKPKDDDE
FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR
NPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIK
RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLS
TKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPS
VLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK
LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCAR
AFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVL
AAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR
PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSET
MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
gene 5059..6681
/gene="VP1"
CDS 5059..6681
/gene="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="BAE98194.1"
/translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGTRTYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTKGDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG
SSAHRNEPQQWVLPDYSGRTVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6681..7487
/gene="VP2"
CDS 6681..7487
/gene="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="BAE98195.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFEFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGSPSTPS
NTSTVTSVYSDQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 cttccgctgc cgctgctgct aacagcaaca acgacaccgc aaaatcttca agtgacggag
61 tgctttctag catggctgtc acttttaaac gagccctcgg ggcgcggcat aaacagcctc
121 ccccgaggga aatgccacaa agacctccac gaccacccac cccggaactt gccaaaaaga
181 tccctccccc cccacccaac ggggaggatg aactagtggt ttcttacagc gccaaagatg
241 gcgtttccgg tttgcctgag cttaccactg tctggcagcc ggatgaaacc aacacggcgt
301 tcagtgttcc cccactcaac cagagggaga atagggacgc caaggagccg ctaaccggaa
361 caatactgga aatgtgggac ggggaaatct atcattacgg tctgtatgtg gaacgaggcc
421 ttgtacttgg tgtgcacaaa ccaccagctg ccatcagcct cgctaaggtt gagctagcac
481 cactctctct gttttggaga ccagtgtata caccacagta tctcatctct ccagacactc
541 tcaggagact gcatggagag tcgttcccct acacagcctt tgacaacaac tgctatgcct
601 tctgttgttg ggtcctggac ctaaacgact cgtggttgtg caggagaatg atccagagga
661 caactggttt cttcagacct taccaagact ggaacaggaa acccctcccc accatggatg
721 actccaaatt gaagaaggta gccaacatat tcttgtgtgc gctatcttcg ctattcacta
781 ggcccatcaa agacataata ggaaaggtga gaccgcttaa catccttaac atcttggcct
841 catgtgattg gacttttgca ggcatagtgg aatctttgat cctcttggca gagctctttg
901 gagttttctg gacaccccca gatgtgtctg cgatgatcgc tcccttacta ggtgactacg
961 aactgcaggg tcccgaggac cttgcagtgg aactcgttcc agtagtgatg ggggggattg
1021 gtttggtact aggattcacc aaagagaaga ttggaaaaat gttgtcatct gctgcatcca
1081 ccttaagggc ttgtaaagac cttggtgcat acggactgga aatcctaaaa ttggtcatga
1141 agtggttctt cccaaagaaa gaggaagcaa atgagttggc tatggtgagg tccatcgagg
1201 atgcggtgct ggacctcgaa gcgattgaga acaatcacat gactgccctc ctcaaagaca
1261 aagacagctt ggcaacctac atgagaaccc ttgacctcga ggaggagaag gccaggaagc
1321 tttcaaccaa gtctgcttca cctgacatcg tgggcacaat caacgctctc ctggcgagaa
1381 tcgccgctgc acgctccctg gtgcatcggg cgaaagagga actctccagc agaccaagac
1441 ctgttgttgt tatgatatca ggcaggccag ggatagggaa aactcacctt gctagggaac
1501 tggccaagaa aatcgcagct tcgcttacag gggaccagcg tgtgggtctc atccctcgca
1561 atggcgttga ccactgggat gcatataagg gggaaagagt cgtcctatgg gacgattatg
1621 gaatgagtaa tcccatccac gacgccctca ggttacagga acttgctgac acctgccccc
1681 tcacgctaaa ctgtgacagg attgagaaca aaggaaaggt ctttgacagt gatgccataa
1741 tcatcaccac taatctggcc aacccagcac cattggacta tgtcaacttt gaagcatgct
1801 cgaggcgcat cgacttcctc gtgtacgcag aagcccctga ggtcgagaag gcaaagcgtg
1861 atttcccagg tcaacctgac atgtggaaga acgcattcag ttctgacttc tcgcacataa
1921 aactgacgct ggctccgcaa ggtggcttcg acaagaacgg aaacacccca cacgggaaag
1981 gcgtcatgaa aaccctcacc actggttccc tcatcgcccg agcatcaggg ctactccatg
2041 agaggttaga tgagtatgag ctgcagggcc caacccccac cacctttaac tttgaccgca
2101 acaaggtgct tgcgttcaga cagcttgctg ccgaaaacaa gtacgggttg ttggacacaa
2161 tgagagttgg gaaacagctc aaggatgtca agaccatgcc agagctcaaa caagcgctca
2221 aaaatgtcgc aatcaagaat tgtcagatag tgtatggtgg ctgcacttac aggcttgagt
2281 ctgatggcaa gggtgatgtg aaagttgaca gagttcagaa cgccattgta cagaccaaca
2341 atgagcttgc cggcgcccta catcatctta ggtgtgccag aatcagatat tatgtcaagt
2401 gtgtccagga ggccctgtat tccatcatcc aaattgctgg agctgcattt gtaaccacgc
2461 gcattgtcaa gcgcatgaac atacaagacc tctggtccaa gccacaggtg gaggacacag
2521 aggagaccgc tagcaatgat ggttgcccaa aacccaagga tgatgacgag ttcgttgtct
2581 catccgatga catcaaaacc gagggcaaga aagggaaaaa caagtctggc cgtggtaaga
2641 agcacacagc attctcaagc aaaggtctca gtgatgaaga gtacgatgag tacaaaagaa
2701 tcagagaaga aaggaatggc aaatactcca tagaggaata ccttcaggac agagataagt
2761 attatgagga ggtggccatc gccagggcaa ccgaagagga cttctgtgaa gaagaagagg
2821 ccaagatccg acaaaggatt ttcaggccaa caaggaaaca acgcaaagag gaaagggcct
2881 ctctcggttt ggtcacaggc tctgaaatca ggaagaggaa cccagacgac ttcaagccta
2941 aaggaaagct gtgggctgat gatgacagga gtgttgacta caatgagaaa ctcaattttg
3001 aagccccacc aagcatctgg tcgaggatag tcaattttgg ttcgggttgg ggtttttggg
3061 tttcccccag cctgttcata acatcaactc atgtcatacc ccagggcgca caggagttct
3121 ttggtgttcc catcaaacaa attcagatac acaaatcggg tgaattctgt cgtttgaggt
3181 ttccaaaacc aatcagaact gacgtgacag gcatgatctt agaagaaggt gcacccgaag
3241 ggaccgtggt cacactactc attaagaggc caactggaga actcatgccc ttggcagcca
3301 gaatgggaac ccatgcaacc atgaagattc aagggcgcac tgttggaggt caaatgggca
3361 tgctcctaac aggatccaac gccaagagta tggacctggg caccacacca ggtgactgtg
3421 gctgtcccta tatttacaag agggggaatg actatgtagt cattggagtc cacacagctg
3481 ccgcccgtgg aggaaacact gtcatatgtg ccacccaagg gagcgaggga gaagccacac
3541 ttgaaggcgg tgacagcaag gggacctact gcggtgcacc aatcttaggt ccaggaagtg
3601 ccccaaagct cagcaccaag actaaattct ggagatcatc cacggcacca ctcccacctg
3661 gtacctatga gccagcctac ctcggcggca aggaccccag agttaagggt ggcccttcat
3721 tgcaacaagt tatgagggac cagctgaaac cattcactga acccaggggt aagccaccaa
3781 aaccaagtgt gttagaagct gccaagaaaa ccatcgtcaa tgtccttgaa caaacaattg
3841 atccacctca aaaatggtca tttgcgcagg catgcgcatc ccttgacaag accacttcca
3901 gtggccaccc gcaccacatg cggaaaaacg actgctggaa cggggaatcc tttacaggca
3961 aattggcaga ccaggcttcc aaggccaacc tgatgtttga ggagggaaag aacatgaccc
4021 cagtctacac gggtgcgctt aaggacgagc tggtcaagac tgacaaaatt tatggcaaga
4081 tcaaaaagag gcttctctgg ggttcggacc tggcgaccat gatccggtgc gctcgagcat
4141 tcgggggcct gatggaggaa ctcaaagcac attgtgtcac actacctgtc agagtgggta
4201 tgaatatgaa tgaggatggt cctatcatct ttgagagaca ctccagatat aaataccatt
4261 atgatgctga ttactcccgg tgggactcaa cacaacaaag agccgtgtta gcagcggctt
4321 tagaaatcat ggtcaagttc tccccagagc cgcatctggc ccaaaaggtt gcagaagacc
4381 ttctttctcc cagcgtgatg gacgtgggtg atttcaaaat atcaattaat gagggtctcc
4441 cctccggggt gccctgcacc tcccaatgga attccatcgc ccactggctc ctcactctat
4501 gtgcactctc tgaggttaca aacctgtccc ctgacattat ccaggccaac tctctctttt
4561 ctttctacgg tgatgatgaa attgtgagca cagacataaa attggaccca gaaaagctga
4621 cagcaaaact caaagaatac gggttgaaac cgacccgccc tgacaagact gagggacccc
4681 ttgttatctc tgaagacctg aatggcctaa ccttcctgcg gaggaccgtg acccgcgatc
4741 cagcaggctg gtttggaaag ttggaacaga gttcaatact cagacaaatg tattggacta
4801 ggggccccaa ccatgaagac ccatctgaaa caatgatacc acactcccag aggcccatac
4861 aattgatgtc tttgctgggt gaggctgcac tccacggccc agcattctac agcaaaatca
4921 gcaaactggt cattgcagag ttgaaggaag gtggcatgga tttttacgtg ccaagacagg
4981 agccaatgtt cagatggatg agattctcgg atctgagcac gtgggagggc gatcgcaatc
5041 tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccagcccatc tgatgggtcc
5101 acagccaacc tcgtcccaga ggtcaacaat gaggttatgg ctttggagcc cgttgttggt
5161 gccgctattg cggcacctgt agcgggccaa caaaatgtaa ttgacccctg gattaggaat
5221 aattttgtac aagcccctgg tggagagttc acagtatccc ctagaaacgc tccaggtgaa
5281 atactatgga gcgcgccctt aggccctgat ctgaacccat acctttctca cctggccaga
5341 atgtacaatg gttatgcagg tggttttgaa gtgcaggtaa tcctcgcggg gaacgcgttc
5401 accgccggga aaatcatatt tgcagcagtc ccaccaaatt tcccaactga aggcttgagc
5461 cccagccagg tcactatgtt cccccatata atagtagatg ttaggcaatt ggaacctgtg
5521 ttgatcccct tacctgatgt taggaataat ttctaccatt acaaccaatc aaatgactcc
5581 accattaaat tgatagcaat gctgtacaca ccacttaggg ctaataatgc tggggatgat
5641 gtcttcacag tctcttgtcg agtcctcacg aggccatccc ccgattttga tttcatattt
5701 ctggtgccac ccacagttga gtcaaggacc aaaccattca ccgtcccaat tttaactgtt
5761 gaggaaatga ccaattcaag attccccatt cctttggaaa aattgttcac gggtcccagc
5821 agtgcctttg tcgtccaacc acaaaatggc agatgcacga ctgatggcgt gctcttaggc
5881 actacccaac tgtcccccgt caacatctgc actttcagag gcgatgtcac ccacattcca
5941 ggtactcgta cttacagaat gaatttggct tctcaaaatt ggaacaatta tgacccaaca
6001 gaagaaatcc cagcccctct gggaactcca gatttcgtgg gaaagatcca aggcatgctc
6061 acccaaacca caaagggaga cggctcgacc cgcggtcaca aagctacagt gagcactggg
6121 agtgttgact ttactccaaa gctgggcagc gttcagttcg ccactgatac agacaatgat
6181 tttgaaactg gccaaaacac aaggttcacc ccagtcggtg tcatccagga tggtagtagt
6241 gcccacagaa atgaacccca acaatgggta ctcccagatt actcaggtag aactgttcat
6301 aatgtacacc tagcccctgc cgtggccccc acttttccgg gtgagcaact tcttttcttc
6361 agatctacta tgcccggatg cagtggttat cccaatatgg atttggattg tctactcccc
6421 caggaatggg tgcagcactt ctaccaagag gcagccccat cacaatctga cgtggctttg
6481 ctgagatttg tgaatccaga cacaggtagg gttctgtttg agtgcaagct tcataaagca
6541 ggctatgtca cagtggctca cactggccag catgatttgg ttatcccccc caatggttac
6601 tttagatttg attcctgggt caaccagttc tacacacttg cccccatggg aaatggagcg
6661 gggcgtagac gtgcattata atggctggag ctttctttgc tggattggca tctgacgtcc
6721 ttggctctgg acttggttcc ctgatcaatg ctggggctgg ggccatcaac caaaaagttg
6781 aatttgaaaa taacagaaaa ttgcaacaag cttccttcga atttagcagc aatctacaac
6841 aggcttcctt tcaacatgac aaagagatgc tccaagcaca aattgaggcc actaaaaagt
6901 tacagcaggg tatgatgaaa gtcaaacagg caatgctcct agagggtgga ttctctgaaa
6961 cagatgcggc ccgtggggca atcaacgccc ccatgacaaa ggctttggac tggagcggaa
7021 caaggtactg ggctcctgat gctagaacta caacatacaa tgcaggccgt ttttccaccc
7081 ctcaaccttc gggggcactg ccaggaagaa ctaatcccag ggctactgtc cccgctcggg
7141 gctcccccag cacaccttct aacacttcta ctgttacttc tgtctattca gatcaaactg
7201 tttcaacgag gcttggttct acagctggtt ctggcaccag agtctcgagt ctcccgtcaa
7261 ctgcaaggac taggagctgg gttgaggatc aaaacaggaa tttgtcacct ttcatgaggg
7321 gggctcacaa catatcgttc gtcaccccac catctagtag atcctctagc caaggcacag
7381 tctcaaccgt gcccaaagaa gttttggact cctggactgg cgctttcaac acgcgcaggc
7441 agcctctctt cgctcacatt cgtaggcgag gggagtcacg ggtgtaatgt gaaaagacaa
7501 aattgattat cttccttttc tttagtgtct ttt
//