Typing tool
|
Complete norovirus genomes
AB220922 | GII.4 Asia | ||
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GII.P12 |
ORF1: 1..5078 ORF2: 5059..6681 ORF3: 6681..7487LOCUS AB220922 7533 bp RNA linear VRL 14-JUL-2016 DEFINITION Norovirus Hu/Sakai/04-179/2005/JP genes for non structural polyprotein, capsid protein, minor structural protein, partial and complete cds. ACCESSION AB220922 VERSION AB220922.1 KEYWORDS . SOURCE Norovirus Hu/Sakai/04-179/2005/JP ORGANISM Norovirus Hu/Sakai/04-179/2005/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Okada,M., Tanaka,T., Oseto,M., Takeda,N. and Shinozaki,K. TITLE Genetic analysis of noroviruses associated with fatalities in healthcare facilities JOURNAL Arch. Virol. 151 (8), 1635-1641 (2006) PUBMED 16521046 REFERENCE 2 (bases 1 to 7533) AUTHORS Okada,M. TITLE Direct Submission JOURNAL Submitted (11-JUL-2005) Mineyuki Okada, Chiba Prefectural Institute of Public Health, Division of Virology; 666-2, Nitona-Cho, Chiba-Shi, Chuo-Ku, Chiba 260-8715, Japan (E-mail:m.okd4@mc.pref.chiba.jp, Tel:81-43-266-6723, Fax:81-43-265-5544) FEATURES Location/Qualifiers source 1..7533 /organism="Norovirus Hu/Sakai/04-179/2005/JP" /mol_type="genomic RNA" /strain="Hu/Sakai/04-179/2005/JP" /isolation_source="stool" /db_xref="taxon:336620" /country="Japan" CDS <1..5078 /codon_start=3 /product="non structural polyprotein" /protein_id="BAE98193.1" /translation="SAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARHKQPPPREM PQRPPRPPTPELAKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDETNTAFSV PPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAP LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQ RTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILN ILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPV VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL AMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV GTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ PDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL DEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMPELKQALK NVAIKNCQIVYGGCTYRLESDGKGDVKVDRVQNAIVQTNNELAGALHHLRCARIRYYV KCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASNDGCPKPKDDDE FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL QDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR NPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH VIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIK RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK RGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLS TKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPS VLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCAR AFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVL AAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAH WLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSET MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF SDLSTWEGDRNLAPSFVNEDGVE" gene 5059..6681 /gene="VP1" CDS 5059..6681 /gene="VP1" /codon_start=1 /product="capsid protein" /protein_id="BAE98194.1" /translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGTRTYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTKGDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG SSAHRNEPQQWVLPDYSGRTVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6681..7487 /gene="VP2" CDS 6681..7487 /gene="VP2" /codon_start=1 /product="minor structural protein" /protein_id="BAE98195.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFEFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGSPSTPS NTSTVTSVYSDQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 cttccgctgc cgctgctgct aacagcaaca acgacaccgc aaaatcttca agtgacggag 61 tgctttctag catggctgtc acttttaaac gagccctcgg ggcgcggcat aaacagcctc 121 ccccgaggga aatgccacaa agacctccac gaccacccac cccggaactt gccaaaaaga 181 tccctccccc cccacccaac ggggaggatg aactagtggt ttcttacagc gccaaagatg 241 gcgtttccgg tttgcctgag cttaccactg tctggcagcc ggatgaaacc aacacggcgt 301 tcagtgttcc cccactcaac cagagggaga atagggacgc caaggagccg ctaaccggaa 361 caatactgga aatgtgggac ggggaaatct atcattacgg tctgtatgtg gaacgaggcc 421 ttgtacttgg tgtgcacaaa ccaccagctg ccatcagcct cgctaaggtt gagctagcac 481 cactctctct gttttggaga ccagtgtata caccacagta tctcatctct ccagacactc 541 tcaggagact gcatggagag tcgttcccct acacagcctt tgacaacaac tgctatgcct 601 tctgttgttg ggtcctggac ctaaacgact cgtggttgtg caggagaatg atccagagga 661 caactggttt cttcagacct taccaagact ggaacaggaa acccctcccc accatggatg 721 actccaaatt gaagaaggta gccaacatat tcttgtgtgc gctatcttcg ctattcacta 781 ggcccatcaa agacataata ggaaaggtga gaccgcttaa catccttaac atcttggcct 841 catgtgattg gacttttgca ggcatagtgg aatctttgat cctcttggca gagctctttg 901 gagttttctg gacaccccca gatgtgtctg cgatgatcgc tcccttacta ggtgactacg 961 aactgcaggg tcccgaggac cttgcagtgg aactcgttcc agtagtgatg ggggggattg 1021 gtttggtact aggattcacc aaagagaaga ttggaaaaat gttgtcatct gctgcatcca 1081 ccttaagggc ttgtaaagac cttggtgcat acggactgga aatcctaaaa ttggtcatga 1141 agtggttctt cccaaagaaa gaggaagcaa atgagttggc tatggtgagg tccatcgagg 1201 atgcggtgct ggacctcgaa gcgattgaga acaatcacat gactgccctc ctcaaagaca 1261 aagacagctt ggcaacctac atgagaaccc ttgacctcga ggaggagaag gccaggaagc 1321 tttcaaccaa gtctgcttca cctgacatcg tgggcacaat caacgctctc ctggcgagaa 1381 tcgccgctgc acgctccctg gtgcatcggg cgaaagagga actctccagc agaccaagac 1441 ctgttgttgt tatgatatca ggcaggccag ggatagggaa aactcacctt gctagggaac 1501 tggccaagaa aatcgcagct tcgcttacag gggaccagcg tgtgggtctc atccctcgca 1561 atggcgttga ccactgggat gcatataagg gggaaagagt cgtcctatgg gacgattatg 1621 gaatgagtaa tcccatccac gacgccctca ggttacagga acttgctgac acctgccccc 1681 tcacgctaaa ctgtgacagg attgagaaca aaggaaaggt ctttgacagt gatgccataa 1741 tcatcaccac taatctggcc aacccagcac cattggacta tgtcaacttt gaagcatgct 1801 cgaggcgcat cgacttcctc gtgtacgcag aagcccctga ggtcgagaag gcaaagcgtg 1861 atttcccagg tcaacctgac atgtggaaga acgcattcag ttctgacttc tcgcacataa 1921 aactgacgct ggctccgcaa ggtggcttcg acaagaacgg aaacacccca cacgggaaag 1981 gcgtcatgaa aaccctcacc actggttccc tcatcgcccg agcatcaggg ctactccatg 2041 agaggttaga tgagtatgag ctgcagggcc caacccccac cacctttaac tttgaccgca 2101 acaaggtgct tgcgttcaga cagcttgctg ccgaaaacaa gtacgggttg ttggacacaa 2161 tgagagttgg gaaacagctc aaggatgtca agaccatgcc agagctcaaa caagcgctca 2221 aaaatgtcgc aatcaagaat tgtcagatag tgtatggtgg ctgcacttac aggcttgagt 2281 ctgatggcaa gggtgatgtg aaagttgaca gagttcagaa cgccattgta cagaccaaca 2341 atgagcttgc cggcgcccta catcatctta ggtgtgccag aatcagatat tatgtcaagt 2401 gtgtccagga ggccctgtat tccatcatcc aaattgctgg agctgcattt gtaaccacgc 2461 gcattgtcaa gcgcatgaac atacaagacc tctggtccaa gccacaggtg gaggacacag 2521 aggagaccgc tagcaatgat ggttgcccaa aacccaagga tgatgacgag ttcgttgtct 2581 catccgatga catcaaaacc gagggcaaga aagggaaaaa caagtctggc cgtggtaaga 2641 agcacacagc attctcaagc aaaggtctca gtgatgaaga gtacgatgag tacaaaagaa 2701 tcagagaaga aaggaatggc aaatactcca tagaggaata ccttcaggac agagataagt 2761 attatgagga ggtggccatc gccagggcaa ccgaagagga cttctgtgaa gaagaagagg 2821 ccaagatccg acaaaggatt ttcaggccaa caaggaaaca acgcaaagag gaaagggcct 2881 ctctcggttt ggtcacaggc tctgaaatca ggaagaggaa cccagacgac ttcaagccta 2941 aaggaaagct gtgggctgat gatgacagga gtgttgacta caatgagaaa ctcaattttg 3001 aagccccacc aagcatctgg tcgaggatag tcaattttgg ttcgggttgg ggtttttggg 3061 tttcccccag cctgttcata acatcaactc atgtcatacc ccagggcgca caggagttct 3121 ttggtgttcc catcaaacaa attcagatac acaaatcggg tgaattctgt cgtttgaggt 3181 ttccaaaacc aatcagaact gacgtgacag gcatgatctt agaagaaggt gcacccgaag 3241 ggaccgtggt cacactactc attaagaggc caactggaga actcatgccc ttggcagcca 3301 gaatgggaac ccatgcaacc atgaagattc aagggcgcac tgttggaggt caaatgggca 3361 tgctcctaac aggatccaac gccaagagta tggacctggg caccacacca ggtgactgtg 3421 gctgtcccta tatttacaag agggggaatg actatgtagt cattggagtc cacacagctg 3481 ccgcccgtgg aggaaacact gtcatatgtg ccacccaagg gagcgaggga gaagccacac 3541 ttgaaggcgg tgacagcaag gggacctact gcggtgcacc aatcttaggt ccaggaagtg 3601 ccccaaagct cagcaccaag actaaattct ggagatcatc cacggcacca ctcccacctg 3661 gtacctatga gccagcctac ctcggcggca aggaccccag agttaagggt ggcccttcat 3721 tgcaacaagt tatgagggac cagctgaaac cattcactga acccaggggt aagccaccaa 3781 aaccaagtgt gttagaagct gccaagaaaa ccatcgtcaa tgtccttgaa caaacaattg 3841 atccacctca aaaatggtca tttgcgcagg catgcgcatc ccttgacaag accacttcca 3901 gtggccaccc gcaccacatg cggaaaaacg actgctggaa cggggaatcc tttacaggca 3961 aattggcaga ccaggcttcc aaggccaacc tgatgtttga ggagggaaag aacatgaccc 4021 cagtctacac gggtgcgctt aaggacgagc tggtcaagac tgacaaaatt tatggcaaga 4081 tcaaaaagag gcttctctgg ggttcggacc tggcgaccat gatccggtgc gctcgagcat 4141 tcgggggcct gatggaggaa ctcaaagcac attgtgtcac actacctgtc agagtgggta 4201 tgaatatgaa tgaggatggt cctatcatct ttgagagaca ctccagatat aaataccatt 4261 atgatgctga ttactcccgg tgggactcaa cacaacaaag agccgtgtta gcagcggctt 4321 tagaaatcat ggtcaagttc tccccagagc cgcatctggc ccaaaaggtt gcagaagacc 4381 ttctttctcc cagcgtgatg gacgtgggtg atttcaaaat atcaattaat gagggtctcc 4441 cctccggggt gccctgcacc tcccaatgga attccatcgc ccactggctc ctcactctat 4501 gtgcactctc tgaggttaca aacctgtccc ctgacattat ccaggccaac tctctctttt 4561 ctttctacgg tgatgatgaa attgtgagca cagacataaa attggaccca gaaaagctga 4621 cagcaaaact caaagaatac gggttgaaac cgacccgccc tgacaagact gagggacccc 4681 ttgttatctc tgaagacctg aatggcctaa ccttcctgcg gaggaccgtg acccgcgatc 4741 cagcaggctg gtttggaaag ttggaacaga gttcaatact cagacaaatg tattggacta 4801 ggggccccaa ccatgaagac ccatctgaaa caatgatacc acactcccag aggcccatac 4861 aattgatgtc tttgctgggt gaggctgcac tccacggccc agcattctac agcaaaatca 4921 gcaaactggt cattgcagag ttgaaggaag gtggcatgga tttttacgtg ccaagacagg 4981 agccaatgtt cagatggatg agattctcgg atctgagcac gtgggagggc gatcgcaatc 5041 tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccagcccatc tgatgggtcc 5101 acagccaacc tcgtcccaga ggtcaacaat gaggttatgg ctttggagcc cgttgttggt 5161 gccgctattg cggcacctgt agcgggccaa caaaatgtaa ttgacccctg gattaggaat 5221 aattttgtac aagcccctgg tggagagttc acagtatccc ctagaaacgc tccaggtgaa 5281 atactatgga gcgcgccctt aggccctgat ctgaacccat acctttctca cctggccaga 5341 atgtacaatg gttatgcagg tggttttgaa gtgcaggtaa tcctcgcggg gaacgcgttc 5401 accgccggga aaatcatatt tgcagcagtc ccaccaaatt tcccaactga aggcttgagc 5461 cccagccagg tcactatgtt cccccatata atagtagatg ttaggcaatt ggaacctgtg 5521 ttgatcccct tacctgatgt taggaataat ttctaccatt acaaccaatc aaatgactcc 5581 accattaaat tgatagcaat gctgtacaca ccacttaggg ctaataatgc tggggatgat 5641 gtcttcacag tctcttgtcg agtcctcacg aggccatccc ccgattttga tttcatattt 5701 ctggtgccac ccacagttga gtcaaggacc aaaccattca ccgtcccaat tttaactgtt 5761 gaggaaatga ccaattcaag attccccatt cctttggaaa aattgttcac gggtcccagc 5821 agtgcctttg tcgtccaacc acaaaatggc agatgcacga ctgatggcgt gctcttaggc 5881 actacccaac tgtcccccgt caacatctgc actttcagag gcgatgtcac ccacattcca 5941 ggtactcgta cttacagaat gaatttggct tctcaaaatt ggaacaatta tgacccaaca 6001 gaagaaatcc cagcccctct gggaactcca gatttcgtgg gaaagatcca aggcatgctc 6061 acccaaacca caaagggaga cggctcgacc cgcggtcaca aagctacagt gagcactggg 6121 agtgttgact ttactccaaa gctgggcagc gttcagttcg ccactgatac agacaatgat 6181 tttgaaactg gccaaaacac aaggttcacc ccagtcggtg tcatccagga tggtagtagt 6241 gcccacagaa atgaacccca acaatgggta ctcccagatt actcaggtag aactgttcat 6301 aatgtacacc tagcccctgc cgtggccccc acttttccgg gtgagcaact tcttttcttc 6361 agatctacta tgcccggatg cagtggttat cccaatatgg atttggattg tctactcccc 6421 caggaatggg tgcagcactt ctaccaagag gcagccccat cacaatctga cgtggctttg 6481 ctgagatttg tgaatccaga cacaggtagg gttctgtttg agtgcaagct tcataaagca 6541 ggctatgtca cagtggctca cactggccag catgatttgg ttatcccccc caatggttac 6601 tttagatttg attcctgggt caaccagttc tacacacttg cccccatggg aaatggagcg 6661 gggcgtagac gtgcattata atggctggag ctttctttgc tggattggca tctgacgtcc 6721 ttggctctgg acttggttcc ctgatcaatg ctggggctgg ggccatcaac caaaaagttg 6781 aatttgaaaa taacagaaaa ttgcaacaag cttccttcga atttagcagc aatctacaac 6841 aggcttcctt tcaacatgac aaagagatgc tccaagcaca aattgaggcc actaaaaagt 6901 tacagcaggg tatgatgaaa gtcaaacagg caatgctcct agagggtgga ttctctgaaa 6961 cagatgcggc ccgtggggca atcaacgccc ccatgacaaa ggctttggac tggagcggaa 7021 caaggtactg ggctcctgat gctagaacta caacatacaa tgcaggccgt ttttccaccc 7081 ctcaaccttc gggggcactg ccaggaagaa ctaatcccag ggctactgtc cccgctcggg 7141 gctcccccag cacaccttct aacacttcta ctgttacttc tgtctattca gatcaaactg 7201 tttcaacgag gcttggttct acagctggtt ctggcaccag agtctcgagt ctcccgtcaa 7261 ctgcaaggac taggagctgg gttgaggatc aaaacaggaa tttgtcacct ttcatgaggg 7321 gggctcacaa catatcgttc gtcaccccac catctagtag atcctctagc caaggcacag 7381 tctcaaccgt gcccaaagaa gttttggact cctggactgg cgctttcaac acgcgcaggc 7441 agcctctctt cgctcacatt cgtaggcgag gggagtcacg ggtgtaatgt gaaaagacaa 7501 aattgattat cttccttttc tttagtgtct ttt //