Typing tool
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Typing tool
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Complete norovirus genomes
| AB220921 | GII.4 Asia | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS AB220921 7559 bp RNA linear VRL 22-JUL-2006
DEFINITION Norovirus Hu/Chiba/04-1050/2005/JP genomic RNA, complete genome.
ACCESSION AB220921
VERSION AB220921.1
KEYWORDS .
SOURCE Norovirus Hu/Chiba/04-1050/2005/JP
ORGANISM Norovirus Hu/Chiba/04-1050/2005/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Okada,M., Tanaka,T., Oseto,M., Takeda,N. and Shinozaki,K.
TITLE Genetic analysis of noroviruses associated with fatalities in
healthcare facilities
JOURNAL Arch. Virol. 151 (8), 1635-1641 (2006)
PUBMED 16521046
REFERENCE 2 (bases 1 to 7559)
AUTHORS Okada,M.
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2005) Mineyuki Okada, Chiba Prefectural Institute
of Public Health, Division of Virology; 666-2, Nitona-Cho,
Chiba-Shi, Chuo-Ku, Chiba 260-8715, Japan
(E-mail:m.okd4@mc.pref.chiba.jp, Tel:81-43-266-6723,
Fax:81-43-265-5544)
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/Chiba/04-1050/2005/JP"
/mol_type="genomic RNA"
/strain="Hu/Chiba/04-1050/2005/JP"
/isolation_source="stool"
/db_xref="taxon:336619"
/country="Japan"
CDS 5..5104
/codon_start=1
/product="non structural polyprotein"
/protein_id="BAE98190.1"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARH
KQPPPRDIPQRPPRPPTPELAKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELGDTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPPGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
PELKQALKNVAIKNCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6707
/gene="VP1"
CDS 5085..6707
/gene="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="BAE98191.1"
/translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRTNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVIHIPGTRTYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTKGDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG
SSAHRNEPQQWVLPDYSGRTVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6707..7513
/gene="VP2"
CDS 6707..7513
/gene="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="BAE98192.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFEFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGSPSTPS
NTSTVTSVYSDQTISTRLGSTAGSGTRVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggacata ccacaaagac ctccacgacc
181 acccaccccg gaacttgcca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtttct tacagcgcca aagatggcgt ttccggtttg cctgagctta ccactgtctg
301 gcagccggat gaaaccaaca cggcgttcag tgttccccca ctcaaccaga gggagaatag
361 ggacgccaag gagccgctaa ccggaacaat cctggaaatg tgggacgggg agatctatca
421 ttacggtctg tatgtggaac gaggccttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgagc tagcaccact ctctctgttt tggagaccag tgtatacacc
541 acagtatctc atctccccag acactctcag gagactgcat ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggatctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc agaccttacc aagactggaa
721 caggaaaccc ctccccacca tggatgactc caaattgaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa aggtgagacc
841 gcttaacatc cttaacatct tggcctcgtg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggccc gaggaccttg cagtggaact
1021 cgttccagta gtgatggggg ggattggttt ggtgctagga ttcactaaag agaagatcgg
1081 aaaaatgttg tcatctgctg catccacctt aagggcttgt aaagaccttg gtgcatacgg
1141 attggaaatc ctaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gttggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 tcacatgact gccctcctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 cctcgaggag gagaaggcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggca ggccagggat
1501 agggaaaact caccttgcta gggaactggc caagaaaatc gcagcttcgc ttacagggga
1561 ccagcgtgtg ggtctcatcc ctcgcaatgg cgttgatcac tgggatgcat ataaggggga
1621 aagagtcgtc ctgtgggacg attatggaat gagtaatccc atccacgacg ccctcaggtt
1681 acaggaactt ggtgacacct gccccctcac gctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaggcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaatgc
1921 attcagttct gacttctcgc acataaaact gacgctggct ccgcaaggtg gcttcgacaa
1981 gaacggaaac accccacccg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca tcagggctac tccatgagag gttagatgag tatgagctgc agggcccaac
2101 ccccaccacc tttaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtac gggttgttgg acacaatgag agttggaaaa cagctcaagg atgtcaagac
2221 catgccagag ctcaaacaag cgctcaaaaa tgtcgcaatc aagaattgtc agatagtgta
2281 tggtggctgc acttacaggc ttgagtctga tggcaagggt gatgtgaagg ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga gcttgccggc gccctacatc atcttaggtg
2401 tgccagaatc agatattatg tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagacctctg
2521 gtccaagcca caggtggagg acacagagga gaccgctagc aaagatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaagg aacggcaaat actccataga
2761 agaatacctt caggacagag ataagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ttttggttcg ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg tgttcccatc aaacaaattc agatacacaa
3181 atcgggagaa ttctgtcgtt tgaggtttcc aaaaccaatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaagggac cgtggtcaca ctactcatta agaggccaac
3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg ggaatgacta
3481 tgtagtcatt ggagtccaca cagctgccgc ccgtggagga aacactgtca tatgtgccac
3541 ccaagggagc gagggagaag ccacacttga gggcggtgac agcaagggga cctactgcgg
3601 tgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta aattctggag
3661 atcatccacg gcaccactcc cacctggtac ctatgagcca gcctacctcg gcggcaagga
3721 ccccagagtt aagggtggcc cttcattgca acaagttatg agggaccagc tgaaaccatt
3781 cactgaaccc aggggtaaac caccaaaacc aagtgtgtta gaagctgcca agaaaaccat
3841 cgtcaatgtc cttgaacaaa caattgatcc acctcaaaaa tggtcatttg cgcaggcatg
3901 cgcatccctt gacaagacca cttccagtgg tcacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gaatccttta caggcaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaggag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctagt
4081 caagactgat aaaatttatg gcaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatc cggtgcgctc gagcattcgg gggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cctgtcagag tgggtatgaa tatgaatgag gatggtccta tcatctttga
4261 gagacactcc agatataaat atcattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cggctttaga aatcatggtc aagttctccc cagagccgca
4381 tctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaataaca atcaatgagg gtctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctatgtgc actctctgag gttacaaacc tgtcccctga
4561 cattatccag gccaattctc tcttttcttt ctacggtgat gatgaaattg tgagcacaga
4621 cataaaattg gacccagaaa agctgacagc caaactcaag gaatacgggt tgaaaccgac
4681 ccgccctgac aagactgagg gaccccttgt tatctctgaa gacctgaatg gcctaacctt
4741 cctgcggagg accgtgaccc gcgacccagc aggctggttt ggaaagttgg aacagagttc
4801 aatactcaga caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagcaa actggtcatc gcagagttga aggaaggtgg
4981 catggatttt tacgtgccaa gacaagagcc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccag cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ccattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt aggactaatt ttgtacaagc ccctggtgga gagttcacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatctga
5341 atccatacct ttctcacctg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat catctttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc cacataatag
5521 tagatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataatttct
5581 accattacaa tcaatcaaac gactccacca ttaaattgat agcaatgctg tacacaccac
5641 ttagggctaa taatgctggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgaggc
5701 catcccccga ttttgatttt atatttctgg tgccacccac agttgagtca agaaccaaac
5761 cattcaccgt cccaatttta actgttgagg aaatgaccaa ttcaagattc cccattcctt
5821 tggaaaaatt gttcacgggt cccagcagtg cctttgtcgt ccaaccacaa aatggcaggt
5881 gcacgactga tggcgtgctc ttaggcacta cccagctgtc ccccgtcaac atctgcacct
5941 tcagaggcga tgtcatccac attccaggta ctcgtactta cagaatgaat ttggcttctc
6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctggga accccagatt
6061 tcgtgggaaa gatccaaggc atgctcaccc aaaccacaaa gggagacggc tcgacccgcg
6121 gtcacaaagc tacagtgagc actgggagtg ttgactttac tccaaagctg ggcagcgttc
6181 agttcgccac tgatacagac aatgattttg aaactggcca aaacacaagg ttcaccccag
6241 tcggtgtcat ccaggatggt agtagtgccc acagaaatga accccaacaa tgggtactcc
6301 cagattactc aggtagaact gttcacaatg tacacctagc ccctgccgta gcccccactt
6361 ttccaggtga gcaacttctt ttcttcagat ctactatgcc cggatgcagt gggtatccca
6421 atatggattt ggattgtcta ctcccccagg aatgggtgca gcacttctac caagaggcag
6481 ccccatcaca atctgatgtg gctttgctga gatttgtgaa tccagacaca ggtagggttc
6541 tgtttgagtg caagcttcat aaagcaggct atgtcacagt ggctcacact ggccagcatg
6601 atttggttat cccccccaat ggctacttta gatttgattc ctgggtcaac cagttctaca
6661 cacttgcccc catgggaaat ggagcggggc gtagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctga tcaatgctgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc
6841 cttcgaattt agcagcaatc tacaacaagc ttcctttcaa catgacaaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttaca gcagggtatg atgaaagtca aacaggcaat
6961 gctcctagag ggtggattct ctgaaacaga tgcggcccgt ggggcaatca acgccccaat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cctgatgcta gaactacaac
7081 atacaatgca ggccgttttt ccacccctca accttcgggg gcactgccag gaagaactaa
7141 tcccagggct actgtccccg ctcggggctc ccccagcaca ccttctaaca cctctactgt
7201 tacttctgtc tattcagatc aaactatttc aacgagactt ggttctacag ctggttctgg
7261 caccagagtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaag
7321 caggaatttg tcacctttca tgaggggggc tcacaacata tcgttcgtca ccccaccatc
7381 tagtagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttc cttttcttta gtgtctttt
//