Typing tool
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Typing tool
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Complete norovirus genomes
| AB190457 | GII.3 | |
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| GII.P29 |
ORF1: 1..872
ORF2: 853..2499
ORF3: 2499..3263
LOCUS AB190457 3315 bp RNA linear VRL 26-JUL-2016
DEFINITION Norwalk virus pol, ORF2 genes for RNA polymerase, capsid protein,
partial and complete cds, strain: SN2000JA.
ACCESSION AB190457
VERSION AB190457.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1
AUTHORS Tsugawa,T., Numata-Kinoshita,K., Honma,S., Nakata,S., Tatsumi,M.,
Sakai,Y., Natori,K., Takeda,N., Kobayashi,S. and Tsutsumi,H.
TITLE Virological, serological, and clinical features of an outbreak of
acute gastroenteritis due to recombinant genogroup II norovirus in
an infant home
JOURNAL J. Clin. Microbiol. 44 (1), 177-182 (2006)
PUBMED 16390967
REFERENCE 2 (bases 1 to 3315)
AUTHORS Tsugawa,T., Numata-Kinoshita,K., Nakata,S., Tatsumi,M. and Sakai,Y.
TITLE Direct Submission
JOURNAL Submitted (15-SEP-2004) Contact:Takeshi Tsugawa sapporo medical
university school of medicine, pediatrics; south-1,west-16,chuo-ku,
Sapporo, Hokkaido 060-8543, Japan
FEATURES Location/Qualifiers
source 1..3315
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="SN2000JA"
/host="Homo sapiens"
/db_xref="taxon:11983"
/country="Japan: Hokkaido, Sapporo"
/note="recombinant norovirus in genogroup II"
gene <1..872
/gene="pol"
CDS <1..872
/gene="pol"
/note="nonstructural protein"
/codon_start=3
/product="RNA polymerase"
/protein_id="BAD99210.1"
/translation="NEDGPIIFEKHSRYHYHYDADYSRWDSTQQRAVLAAALEIMVKF
SSEPHLAQVVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHWLLTLCALSE
TTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPGKLTAKLKEYGLKPTRPDKTEGPLII
SEDLDGLTFLRRTVTRDPAGWYGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQ
LMSLLGEAALHGPSFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDR
NLAPSFVNEDGVE"
CDS 853..2499
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="BAD99211.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2499..3263
/note="ORF3"
/codon_start=1
/product="hypothetical protein"
/protein_id="BAD99212.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQVEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTLMSGGFTNQAVHRTTPNFKMNQTPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 tgaatgaaga tggccccatc atctttgaga aacactctag gtaccactat cactatgatg
61 cagactactc ccggtgggat tcaacacaac agagagctgt gctagccgca gccctagaga
121 tcatggtaaa attctcttca gaaccacacc tagcccaggt ggttgcagag gaccttcttt
181 cccccagtgt gatggacgtg ggtgatttca agatatcaat cactgaaggg cttccttccg
241 gggttccttg cacttcacag tggaactcca tcgcccattg gctcctcaca ctctgtgcac
301 tctctgaaac cacaaatctg tcccctgaca tcatccaggc aaattctctc ttctccttct
361 atggtgatga tgaaatcgtg agcacagata tcaaattaga cccagggaag cttacagcaa
421 agttaaaaga gtatgggtta aaaccaactc gccctgacaa gactgaggga cctctgatca
481 tctctgagga cctagatggc ctgaccttcc tacgaaggac cgtgacccgt gacccagctg
541 gttggtatgg aaagctggag caaagttcaa tacttagaca aatgtattgg accaggggcc
601 ctaaccatga ggacccctct gaaacaatga taccacactc ccagagaccc atacagctga
661 tgtcactgtt aggtgaagca gcactacatg gaccatcatt ctacagcaag attagtaagc
721 tagtcattgc agagctgaag gaaggtggca tggactttta cgtgcctagg caagaaccaa
781 tgttccggtg gatgaggttc tcagacttga gcacgtggga gggcgatcgc aatctggctc
841 ccagctttgt gaatgaagat ggcgtcgaat gacgccactc catctaatga tggtgccgcc
901 ggcctcgtcc cagagatcaa caatgaggca atggcgctag acccagtggc gggtgcagcg
961 atagcagcac ccctcactgg tcagcaaaat ataattgatc cctggattat gaataatttt
1021 gtgcaagcac ctggtggtga gtttacagta tcccccagga attcccctgg tgaagtgctt
1081 cttaatttgg aattgggccc agaaataaac ccctatttgg ctcatcttgc tagaatgtat
1141 aatggttatg caggtggatt tgaagtgcag gtagtcctgg ctggaaatgc gtttacagca
1201 ggaaagataa tctttgcagc tataccccct aattttccaa ttgataatct gagcgcagca
1261 cagatcacaa tgtgcccgca tgtgattgtg gatgtcagac agttggaacc ggtcaacctt
1321 ccgatgcctg acgttcgcaa caatttcttt cattacaatc aagggtctga ttcgagattg
1381 cgcttaatcg caatgctgta tacacctctt agggcaaata attctgggga tgatgttttt
1441 actgtgtctt gtagagtgtt gactaggcct agccctgact tttcatttaa ttttcttgtg
1501 ccacctactg tggagtcaaa gacaaagccc ttcaccctcc ctattctaac tatctctgaa
1561 atgtccaatt ctaggtttcc agtgccgatt gattctctgc acaccagccc aactgagaat
1621 attgttgtcc agtgtcaaaa tgggcgtgtc actcttgatg gtgagttgat gggcaccacc
1681 caactcttac cgagtcaaat ctgtgctttc aggggcgtgc tcaccagatc aacaagcagg
1741 gccagtgatc aggccgacac agcaacccct aggttgttta attattattg gcacatacaa
1801 ttggataatc taaatgggac tccttatgat cctgcagaag acataccagg ccccctaggg
1861 acaccagatt tccggggcaa agtctttggc gtggccagcc agagaaaccc cgacagcaca
1921 actagagcac atgaagcaaa ggtggacaca acagctggtc gtttcacccc aaaattaggc
1981 tcattagaaa tatccactga atctggtgac tttgaccaaa accaaccaac aagattcacc
2041 ccagttggca ttggggttga caatgaggca gactttcaac aatggtcttt acccgactat
2101 tctggtcagt tcacccacaa catgaacttg gccccagctg ttgctcccaa ctttcctggt
2161 gagcagctcc ttttctttcg ctcacagtta ccatcttctg gtgggcgatc taacgggatt
2221 ctagactgcc tggtccccca agaatgggtt cagcacttct accaagaatc ggcccccgcc
2281 caaacacaag tggccctggt taggtatgtc aaccctgaca ctggtagagt gttatttgag
2341 gccaagctgc acaaattagg tttcatgact atagctaaga atggtgattc tccaataact
2401 gtccctccaa atggatactt taggtttgaa tcttgggtga acccctttta tacacttgcc
2461 cccatgggaa ctgggaatgg gcgcagaagg attcaataat ggctggagct tttatagcag
2521 gattggctgg tgacatactt acaaatactg taggatctct agttaatgca ggggctaatg
2581 ctattaatca aaaagttgat tttgaaaaca ataaatattt acaaaatgca tccttcaatc
2641 atgataagga aatgttaaat gcacaagttg aggcaacaaa gaggttacag gctgacatga
2701 ttgctatcaa acaaggggtt ttgaccgctg gcggcttctc ccctactgat gcagcccgcg
2761 gggcaattaa cgcccccatg acaaaagtcc tagactggaa tggaacgagg tactgggcac
2821 caaatgccac ctccacaact ttaatgtcgg gtggcttcac aaatcaagct gtgcacagaa
2881 ccacgccaaa ttttaaaatg aaccagactc ccaaatccac acccagcagt gggtcttcag
2941 tgaggtcaaa ctcaacccaa atcactagcc tgagctcaca ctcgtccggg tcgtctcgat
3001 ccagcgggtc tacagttgtt agctcattac catcctctaa caggactagg gactgggtca
3061 accaacagaa ttttaatctg gaaccacaca tgcctggatc tcttaggaca gcttttgtta
3121 ctccaccatc tagtacagcc tctagttcag gcacggtctc aaccgtgccc aaaaatgttt
3181 tggactcctg gacatctgcg ttcaatacgc gcagacagcc gctattcgca caccttcgca
3241 gaagggggga gtcaaatgtt tagtgaaaag attattttaa atttgattta aattggattt
3301 gatttggaat ctttt
//