Typing tool
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Typing tool
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Complete norovirus genomes
| AB083780 | GII.22 | |
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| GII.P22 |
ORF1: 5..5140
ORF2: 5121..6746
ORF3: 6746..7507
LOCUS AB083780 7560 bp RNA linear VRL 10-JAN-2009
DEFINITION Norwalk-like virus genomic RNA, complete genome, strain: YURI.
ACCESSION AB083780
VERSION AB083780.1
KEYWORDS .
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Kuzuguchi,T., Saito,H. and Kawamoto,H.
TITLE Complete sequence determination for genogroup 2 (G2) Norwalk virus
(NV) represented most current strain of Japan
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7560)
AUTHORS Kuzuguchi,T., Kawamoto,H. and Saito,H.
TITLE Direct Submission
JOURNAL Submitted (15-APR-2002) Contact:Tsuyoshi Kuzuguchi Gifu Prefectural
Institute for Bio-Industrial Technology, Molecular Microbiology;
Hachiyacho Kamihachiya 3481-2, Minokamo, Gifu 505-0004, Japan
FEATURES Location/Qualifiers
source 1..7560
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/strain="YURI"
/host="Homo sapiens"
/db_xref="taxon:95340"
/country="Japan: Akita, Yuri"
CDS 5..5140
/codon_start=1
/product="polyprotein"
/protein_id="BAF38393.1"
/translation="MKMASNDAATATAGKTSTNSEIHNQDVNPTSNLFANMSVGLRRA
LGARPKQPVPRVPSPNKERGLGTTPRALSPNKGGRTNIPPVPPPPPNGEDIIIKYTKQ
DDVVEGVPTVATVDVSPTHNTAYSVPPLDLREKVDAKEPLTGSILEMWDGEIYHYGLY
VEKGLVLGVHKPPAAISFARIELTPLSLYWRVVYTPPYLIAPETLRKLHGESFPYTAF
DNNCYSFCCWVLDLNDSWLNRKYVSRTTGFYRPYQEWNRKPLPTMDEGKLKKVANVLL
CGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGVVEALILLAELFGIFWTPPDIS
TFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGRLLSSAASSLRACREI
GNYGIEVVKLMMKWFFPTKDEANEMDMVRAIEDAVLDFEAIQNNHMTALLKDKNSLAT
FLRELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVHKAKEEMSSRMRPVVI
MISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGM
SNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEAC
SRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPH
GKGVMKTLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDHNRVAAFRRLAADNKYG
LMETMKVGNKLKGVRNLEQLKDALKDISIKPCRIVYNSMAYDLDSNGSGRVNVKKVAD
HKVQTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAFVTSRMTRRLNIGSIW
ARPEQQVETAKEPPAPPTEDWTITPTNTVQEGKKGKNKSGRGKKHTAFSSKGLSDEEY
DEYKRIREERQGKYSIEEYLQDRDRYYEELAIARATEENFCEEEEIKIRQRIFRPTRK
QRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDDRSVNYNEKIDFEAPPSLWSRIV
NFGSGWGFWVSSNLFITSTHVIPPNMIEAFGVPIGQIQVHRSGEFCKMRFPKAIRPDV
SGMILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQGKMLGGQMGMLLTGSN
AKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGD
NHGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQ
VMRDQLKPFTAPRGRPPRPAILEAAKETICNVLEQTIDPPQKWSYAQACASLDKTTSS
GHPHHMKKNDNWNGESFTGVLADQASKANLMYEQGKHMQPVYTAALKDELVKTSKVYE
SIKKRLLWGSDLGTMIRCARGFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFEKHSKY
KYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVGDFKIA
INEGLPSGVPCTSQWNSISHWLITLCAISEVSGLSPDVVQSNSCFSFYGDDEIVSTDI
KLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKENLEGLTFLRRDVCRDPAGWYGKLDQS
SIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPAFYKKVSKLVITELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5121..6746
/codon_start=1
/product="capsid protein"
/protein_id="BAF38394.1"
/translation="MKMASNDAAPSNDGAAGLVPEINTEVMALEPVAGGAIAAPLTGQ
TNIIDPWIRNNFVQAPNGEFTISPRNSPGEILLNMELGPELNPFLAHLSRMYNGFAGG
MEVQVLMAGNAFTAGKVIFAAVPPHFPVENLSPPQITMFPHIIIDVRTLEPVLLPMPD
VRNQFFHYNQVNEPRMRLVAMLYTPLRSNGSTEDVFTVSCRVLTRPSPDFEFNYLVPP
TVESRTKPFTLPVLTIGEMTNSRFPAPIDMLYTSPNGNVVVQPQNGRCTLDGELQGST
QLVPANVCAFRGKITARIVDQAAHQWHMQIDNPNGTLFDPTEDVPAPLGTPDFKAKIF
GVISQRNDYNDGSQGPANRAHDAVVPTTSAKFTPKLGSILVGTWENNDIETQPSKFTP
VGLLEMNDFNQWSLPNYSGALTLNMGLAPAVFPTFPGEQILFFRSFIPLKGGHGNPAI
DCLLPQEWIQHFYQESAPSQTSVALIRYVNPDTGRVLFEGKLHRQGFITIAKSGDGPI
VVPPNGYFRFDSWVNQFYSLAPMGNGNGRRRIQ"
CDS 6746..7507
/codon_start=1
/product="hypothetical protein"
/protein_id="BAF38395.1"
/translation="MAGAFIAGLAGDIVTNGVGSLVNAGANAINQKVDFENNKYLQSA
SFAHDKEMLKAQIEATKQLQSDMIAIKQSVLSAGGFAPADAARGSVNAPMTKVLDWGG
TRYWAPNSTSTTMYSGGFTGQPVHRPTPNFSMKSKPVPSVASSSHKSNSTASTQLGSV
SSGSSRSSVSTATSSLPSTTRTVEWVRQQNRELEPHMPGSLRTAFVTPPSSTASSSGI
VSTVPKGVLDSWTPVFNTHRQPLFAYLHKRGESKV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctgc cactgcgact gctggcaaaa ccagcacaaa
61 cagtgaaatt cacaatcaag atgtaaaccc tacatcaaac ctctttgcca acatgtctgt
121 tggcttaagg agagccctgg gggcgaggcc aaaacagccc gtccccaggg tcccctcccc
181 caataaggag agagggctcg gtaccacccc tagagctctc tcccccaaca agggaggaag
241 aaccaacatc cccccagtac cgcccccacc acccaacggt gaggacataa tcatcaaata
301 caccaaacaa gatgatgtgg ttgaaggggt gcccaccgtt gccacggtgg acgtttctcc
361 cacgcacaac accgcctaca gtgtacctcc cttggaccta agagagaagg ttgacgcaaa
421 ggaacccctg acaggttcga tacttgaaat gtgggatggg gaaatctacc actatggact
481 atatgtggag aaaggcttgg tccttggtgt gcacaaacct ccagctgcca taagttttgc
541 acgcatagaa ctcactcctc tttctctata ctggagggta gtttacaccc caccttacct
601 aatagcccca gaaaccctca ggaaactcca tggggagtca ttcccataca cagcttttga
661 taataactgc tattccttct gctgttgggt actggatctg aacgattctt ggctcaatag
721 gaagtatgta tcaaggacca cgggtttcta caggccctac caagagtgga ataggaaacc
781 cctaccaacc atggatgagg gaaagttaaa gaaggtggcc aatgtgctcc tgtgtggcct
841 ctctgggctc ttcactaggc ccatcaagga tctcatagga aaactgaggc cactgaacat
901 actcaacatc atcaccaact gtgattggac atttcccggg gttgtggagg ctctcatact
961 gcttgcagaa ctctttggga tcttttggac accaccagat atttccacct tcatagcatc
1021 gctgctgggt gattatgaaa tgcagggccc tgaggatatc gcggttgagg tcgtgccggt
1081 gatcctcggt ggcataggta tggtacttgg attcaccaaa gaaaggatcg gccgactgtt
1141 gagctcggct gcgtcttcgc tcagagcatg cagggagatc ggtaactacg ggattgaggt
1201 ggtgaaactg atgatgaagt ggtttttccc caccaaggat gaggcaaacg agatggacat
1261 ggtgagggca atagaggatg ctgtgctcga ttttgaagct atacagaaca accatatgac
1321 agcattgctc aaggacaaaa acagtctagc aaccttcctc agggagctag atatggaaga
1381 ggagaaggcg cggaagctgt caacaaaatc cgcgtcccca gatattattg gtaccataaa
1441 tgcccttcta gccagaattg ccgctgctag gtccctagtc cacaaggcca aagaagaaat
1501 gtcatctagg atgcgtcctg ttgtcatcat gatctctggt cggcccggaa taggaaagac
1561 acatctggcc cgtgacctgg ccaagaagat ggcggcaacc ctctcaggcg atcagagggt
1621 ggggctcgta ccgagaaatg gtgttgacca ttgggatgca tacaaagggg agaggattgt
1681 gctttgggac gactacggta tgagcaaccc tgtgaccgat gcactgcgac ttcaggagct
1741 agctgacacg tgtcccctaa cacttaattg tgacagaata gagaataagg ggaaagtgtt
1801 tgacagtgac accataatta ttaccaccaa tctggctaat cctgctcctc tagactatgt
1861 taattttgaa gcttgctccc gccgtatcga tttccttgtt tacgctgatt ccccctcagt
1921 tgacaaagca aagagagact tccctggtca accagacatg tggaaagatg cattcaagtc
1981 agacttttca cacataaaac tccagttggc gccacaaggg ggctttgaca agaacgggaa
2041 tactcctcat gggaagggtg tcatgaaaac actgacaaca cactccctca ttgcccgcgc
2101 cactggcctc ttacacgaga ggttggatga gttcgaccta cagggacctg agctgcctgt
2161 gtacaacttt gaccacaaca gggtggctgc gttcaggaga cttgcagctg acaacaagta
2221 tggcctcatg gagaccatga aagtgggcaa caaattaaag ggagtcagga atctggagca
2281 actcaaggac gctctaaaag acataagtat caaaccttgt agaatagtct acaactcgat
2341 ggcttacgac ctcgactcaa acggatcagg gagagtcaac gttaaaaagg ttgcagatca
2401 caaggtccaa accaacaatg agctcaactc cgcgctcaac aatctgcgtg gtgctagagt
2461 gagatactat gtcaagtgtg ttcaagagat ggtgtactct ctcctccaga tcgctggtgc
2521 ggccttcgtc acttcaagga tgacacggag actgaacatc ggcagtatct gggccagacc
2581 agaacaacaa gtggagactg ctaaggaacc cccagccccc ccaactgaag attggactat
2641 aacaccaaca aacacagttc aggaaggtaa gaaaggtaag aacaagagtg gtagaggcaa
2701 gaaacacacc gccttctcca gcaagggcct cagtgatgaa gagtacgatg agtacaagag
2761 aatcagggag gagagacaag gaaagtactc tatagaggaa taccttcagg acagggaccg
2821 gtattatgag gagctagcca tagccagagc aacagaagag aacttttgtg aggaggaaga
2881 gataaaaatt aggcagagga tcttccgccc caccaggaaa caacgtaagg aggagagagc
2941 aactctgggc ctagttacgg gcagtgagat aaggaagagg aacccagatg atttcaagcc
3001 aaagggaaaa ctgtgggctg acgacgaccg cagtgtgaac tacaatgaga agatagactt
3061 tgaagcgccc cccagccttt ggtcccgaat agtgaacttc ggatcaggct ggggcttctg
3121 ggtgtcatct aacttgttca ttacatcaac tcatgtcatc cccccaaaca tgattgaggc
3181 ctttggtgta ccaataggtc aaatacaagt acacaggagt ggtgagttct gcaaaatgag
3241 gttccctaaa gctataagac ccgatgtctc aggtatgatc cttgaggaag gagcccccga
3301 gggaacagtg gtgaccatcc tgatcaagag aacaactggt gaactcatgc cactggcggc
3361 ccggatgggc actcatgcca ccatgaaaat acaagggaag atgcttgggg gtcaaatggg
3421 catgttactc acagggtcca atgccaaaaa catggatctt ggcactatcc ccggggactg
3481 tggctgtcct tatgtgtaca agagaggcaa tgattgggtg gttatagggg tgcataccgc
3541 agctgccaga ggcggcaaca cagtgatctg cgccacccag ggaccagatg gtgaggccac
3601 gcttgaaggg ggggacaacc atgggactta ctgtggtgca ccaatacttg gaccagggaa
3661 tgcaccaaaa ctcagcacca agacgaagtt ctggaggtca tccaacgccc cactcccacc
3721 tggcacttat gagcctgcct acttaggtgg gaaggaccca agagtcaagg gggggccatc
3781 tctgcagcaa gtcatgaggg atcaactcaa gcccttcacc gctccccggg ggaggccacc
3841 acgaccagcg attctggagg ctgctaaaga gaccatttgc aatgtgcttg aacaaaccat
3901 tgatccaccc caaaaatggt cttatgcaca agcctgtgcc tcattggata agacaacatc
3961 gagtggtcat cctcaccaca tgaaaaagaa tgacaactgg aatggagagt ccttcactgg
4021 cgtgttggct gaccaagctt ccaaggcaaa cctcatgtac gaacagggaa aacacatgca
4081 gcctgtgtac actgctgccc tcaaggacga gctcgttaag accagcaagg tttatgagag
4141 tatcaagaaa aggctactat ggggctcaga tttgggcaca atgattcgct gtgctagggg
4201 ttttggtggt cttatggatg aaatgaaagc aaattgtgta aacttaccaa tcagagttgg
4261 catgaacatg aatgaggatg gacccattat ttttgaaaag cattcaaagt ataagtacca
4321 ttatgatgct gactactcta ggtgggactc aacccaacag aggcacatct tgggagctgc
4381 ccttgaaata atggtcaggt tctcagctga acctgagttg gcacagattg tgtctgaaga
4441 cctcctagcc cccagtgtgg tggacgttgg tgactttaaa atcgccataa acgagggttt
4501 gccctctggg gtgccgtgta catcacagtg gaattcaatc tctcattggc taataacact
4561 gtgtgccata tcagaagtct cagggttgtc accagatgta gtacaatcaa actcctgctt
4621 ctctttctac ggggatgatg aaatagtcag cactgacatc aagttagatc ccatgaaact
4681 aactaacaag ctgaaagagt acgggctgat cccaacaaga ccagataaga cagagggacc
4741 actcataatt aaagagaacc ttgaaggttt gactttcctg agaagggacg tgtgccggga
4801 cccagctggt tggtatggaa aacttgacca atcctcgatc atgagacaac tgttctggac
4861 caagggaccc aatcatgatg accccaatga gacaatgatc ccacactctc agaggcccat
4921 acaactgatg tctctactag gggaggcagc actgcacgga ccagccttct acaagaaagt
4981 cagcaaattg gttatcactg agctcaaaga gggtgggatg gatttctatg tgccaagaca
5041 ggaacctatg ttcagatgga tgagattctc tgacctcagc acttgggagg gcgatcgcaa
5101 tcttgctccc gaaggtgtga atgaagatgg cgtcgaatga cgctgctcca tctaatgatg
5161 gcgctgccgg cctcgttcca gagatcaaca cagaggttat ggcactggag ccagttgctg
5221 gaggagctat cgcagcccct ctcactggac aaacaaatat aattgatccc tggattagaa
5281 ataattttgt gcaagcccca aatggtgaat tcaccatatc tcctagaaac tccccagggg
5341 aaatcctgtt aaatatggaa ttaggacctg agttgaaccc tttcttggct cacctctcca
5401 gaatgtacaa tggttttgca ggtggtatgg aggtacaggt attgatggcg gggaatgctt
5461 tcaccgctgg aaaggtcatc tttgctgcag ttccacccca ttttccagtg gagaatttaa
5521 gcccccccca aataactatg ttccctcata taattataga tgttaggacc ctagaaccag
5581 tcttgttgcc catgcccgat gtgagaaatc aattcttcca ttacaatcag gtgaacgaac
5641 ccaggatgcg gttagtggcc atgctctaca cacccttgag atcaaacgga tccactgaag
5701 acgttttcac ggtgtcctgc agggtgttga ccaggccttc accggatttt gagttcaatt
5761 acctggtgcc cccaactgtg gagtcaagaa caaaaccctt caccttacct gtcctcacaa
5821 ttggagagat gacaaattca cgcttccccg cacccataga tatgctttac actagcccca
5881 atggtaatgt agttgtacaa ccacaaaatg gtagatgcac ccttgatggt gagcttcagg
5941 gaagcacaca actagtccca gcaaatgtgt gtgcatttag aggtaaaatc acagcaagga
6001 tcgttgatca ggcagcacac cagtggcata tgcagattga caatcccaat gggacactct
6061 ttgatccaac tgaggatgtg cctgcacccc ttggaacccc tgacttcaaa gccaagatat
6121 tcggggtcat atctcaaagg aatgattaca atgatggtag tcagggacct gcaaacagag
6181 cacatgatgc cgtggtaccc accacgtcag ctaaattcac cccaaaattg ggttccatat
6241 tggtgggcac ttgggagaat aatgacatag aaacacagcc ttccaaattc actccagttg
6301 gcctgctcga gatgaatgac ttcaatcagt ggtcacttcc aaattattca ggggccctaa
6361 ccctcaatat gggccttgca ccagcggtct tcccaacttt ccctggtgag cagattcttt
6421 tcttcagatc ttttatccca cttaaaggcg gccacggcaa tccagccatc gactgccttc
6481 tcccgcaaga gtggatacag cacttctacc aggagtctgc cccctcccaa accagtgttg
6541 ctctgattag gtatgtaaac cctgatacag gacgagtcct gtttgaggga aagttgcata
6601 ggcagggatt cataaccatt gcaaagtcag gagatggacc aattgttgtg cccccaaatg
6661 gatattttag gtttgactct tgggtgaatc aattttactc acttgccccc atgggaaacg
6721 gaaacgggcg cagaaggatc cagtaatggc aggagcattt atagcaggat tggctggtga
6781 cattgtcaca aatggggtgg ggtcattagt taatgcaggg gctaatgcta tcaatcaaaa
6841 agttgatttt gaaaataata aatatcttca atcagcatca tttgctcatg ataaggagat
6901 gcttaaagca caaattgagg ccactaaaca actccagtct gacatgattg ccatcaaaca
6961 aagtgtgtta tccgctggcg ggttcgcacc tgcggacgcg gcaaggggat cagtcaatgc
7021 acccatgaca aaggtccttg attggggtgg cactagatat tgggcaccaa attcgacctc
7081 cacgaccatg tactctggtg gttttacagg ccaaccagtg cataggccga cgccaaattt
7141 ttcaatgaag agcaagcccg tgccgagtgt tgcatcatcc tcccacaagt ccaattccac
7201 agcatcaacc cagctcggct ctgtgtcgtc tggttcgtcc agatccagcg tctccactgc
7261 aactagctca ctcccatcca caaccagaac agtggagtgg gtcaggcagc agaacagaga
7321 gctggaaccg cacatgcccg gatcgctgag gacggccttt gtcacaccgc catctagcac
7381 ggcctctagc tcgggcatag tctcaaccgt gcccaaaggt gttttggact cctggacgcc
7441 tgtgtttaac acacataggc agccgctttt cgcatacctc cataagaggg gggagtcaaa
7501 agtttagtga aaagaaagat ttttctatga ttaggttaat gatttggttt tctttcttgc
//