Typing tool
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Typing tool
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Complete norovirus genomes
| AB081723 | GI.6 | |
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| GI.PNA1 |
ORF1: 5..5371
ORF2: 5355..6977
ORF3: 6977..7606
LOCUS AB081723 7693 bp RNA linear VRL 14-MAR-2019
DEFINITION Norwalk-like virus genomic RNA, complete genome, strain: WUG1.
ACCESSION AB081723
VERSION AB081723.2
KEYWORDS .
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T.,
Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y.,
Gojobori,T. and Takeda,N.
TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like
viruses
JOURNAL Virology 299 (2), 225-239 (2002)
PUBMED 12202225
REFERENCE 2 (bases 1 to 7693)
AUTHORS Katayama,K., Shirato-Horikoshi,H., Takeda,N., Kageyama,T.,
Fukushi,S. and Kojima,S.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2002) Contact:Kazuhiko Katayama National
Institute of Infectious Diseases, Department of Virology II; 4-7-1
Gakuen, Musashi-murayama, Tokyo 208-0011, Japan
COMMENT On Mar 18, 2019 this sequence version replaced AB081723.1.
FEATURES Location/Qualifiers
source 1..7693
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/strain="WUG1"
/db_xref="taxon:95340"
/country="Japan:Wakayama"
gene 5..5371
/gene="ORF1"
CDS 5..5371
/gene="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="BAC11839.1"
/translation="MMMASKDVVATNVASNNNANNTSATSRFLSRFRGLGGGASPPNP
IKIKSTEMALGLIGKTTQEVAGTSDLPPKQQRDRPPRTQEEVQYGLGWTERPMDQNVK
SWEELDTTTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVKWSVRDGVNL
GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCF
DFCCQIMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFINLGPVCRRVDFLVY
CSAPEVEQIRKVSPGDTSALKDCFKPDFSHLKMDLAPQGGFDNQGNTPFGKGVMKPTT
INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMAGLGKKLR
GVTSMEGLKNALKGHKIGMCTIKWQAKVYSLESDGNNVNIREEKNVLTQQQQSVCAAS
IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE
HKCRVHQAKAAGKGPIGHDDMVEKYGLCETEEDEEVVHTEMPSATIEGKNKGKNKKGR
GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDDR
EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIVKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPHHKRKNDDWNGTAFIRELGEQAAHANNMYEQAKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEA
SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
gene 5355..6977
/gene="VP1"
CDS 5355..6977
/gene="VP1"
/note="ORF2;
structure protein VP1"
/codon_start=1
/product="capsid protein"
/protein_id="BAC11840.2"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNT
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6977..7606
/gene="VP2"
CDS 6977..7606
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="BAC11841.2"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDREMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcgactaat gttgcaagca acaacaatgc
61 taacaacact agtgctacat ctcgattttt atcgagattt aggggtttgg gtggtggcgc
121 gagccccccc aaccccataa agatcaaaag cacagaaatg gccttgggtt taattggcaa
181 gacaacccaa gaggtggcag ggaccagtga cctaccaccc aaacagcaga gagaccgtcc
241 ccccaggacc caggaggaag ttcagtatgg tttggggtgg actgaaaggc ccatggacca
301 aaatgtcaag tcatgggagg agcttgacac cacaaccaag gaagagatct tggacagtca
361 taaagagtgg tttgatgccg gcggcttagg cccatgcaca atgccctcaa cttgtgaaca
421 agccaaagat gacagcccac ctggtgaaca ggtcaaatgg tcagtgcgtg atggagttaa
481 tcttggggtg aatcgcctca caacggtgag tggtcctgaa tggaacctct gtccgctacc
541 ccccattgac ctaaggaata tggagccagc tagtgaaccc accattggag acatgataga
601 gttttatgaa ggccatatct atcactactc catatacatt gggcagggta agacagttgg
661 tgtgcattcc ccacaggcgg cattctcagt ggctagagtg actatccaac ctatagccgc
721 ttggtggagg gtttgttata taccccaacc taaacatagg ttgagttatg atcaactcaa
781 agaattggaa aatgaacctt ggccatatgc agctatcacc aacaattgct ttgacttttg
841 ctgccaaatt atgaatcttg aggacacatg gttacaaagg cggctaatca catcgggcag
901 atttcatcac ccatcccagt cttggtcaca gcaaacccct gaatttcagc aggatagcaa
961 gctggaacta gttagggatg ctatattggc cgcagtgaat ggcctagttt cacaaccctt
1021 caagaatttc ctaggtaagc tcaagcccct taatgtatta aacatcctat ctaactgtga
1081 ctggactttt atgggggtgg tagagatggt tatactgctc cttgagctct ttggcgtgtt
1141 ctggaacccg cccgatgtat ccaattttat agcgtccctt cttcctgatt tccacctcca
1201 ggggcccgaa gatctggccc gggatctggt tccagttatt cttggtggta tagggctagc
1261 cattgggttc accagagaca aggtcactaa ggtcatgaag agtgccgtag atggcctccg
1321 ggccgctacg cagttgggac agtatgggtt agaaatattc tcactcctta agaagtattt
1381 ctttggtgga gaccagactg aacggaccct caaaggcatt gaagcagcag taatagacat
1441 ggaggtgttg tcctccacat cagtgacaca gctggtgaga gacaagcagg cagccaaggc
1501 ttacatgaac attctggata atgaagagga aaaagcaaga aagctctctg ccaagaatgc
1561 tgaccctcat gtaatatcct caacaaacgc cctaatatcg cgtatagcta tggcgcggtc
1621 cgcattggcc aaggctcaag ctgaaatgac cagtcgaatg aggccagtcg tcattatgat
1681 gtgtggcccc cctgggattg ggaagactaa agctgcggaa cacctggcaa aacgactggc
1741 caatgagatc agacctggtg gcaaagtggg gctggtgcca cgtgaggctg ttgaccactg
1801 ggatggctat catggtgagg aagtgatgct atgggatgat tatggtatga caaaaataca
1861 agatgactgc aataagctcc aggctattgc tgattctgcc ccactcactc tgaattgtga
1921 taggatagaa aataaaggga tgcaatttgt gtcagatgca atagtcatca ctaccaatgc
1981 cccagggccc gcccctgtgg acttcatcaa tcttggcccc gtgtgcagac gggttgattt
2041 cctggtttac tgctccgccc cagaggtaga acagataagg aaagtcagcc ctggtgacac
2101 atcagcatta aaggattgct tcaagccaga cttctcccat ctgaagatgg atttggcccc
2161 acaaggaggg tttgacaacc agggaaacac accatttggc aagggcgtta tgaagccaac
2221 aaccatcaat aggctactca tacaagctgt ggctctcacc atggagaggc aggatgagtt
2281 ccggctccag gggaagatgt atgacttcga cgatgatcga gtgtcagcat tcaccaccat
2341 ggcacgcgac aacgggttgg gcatcttgag catggcgggc ttaggcaaga agctgcgcgg
2401 cgtcacatcg atggaaggtc tgaagaacgc cttgaagggg cacaaaattg gcatgtgcac
2461 aattaagtgg caggccaagg tgtattcact agaatcagat ggtaacaatg ttaacatcag
2521 agaggagaaa aacgttctaa cccaacaaca acagtcagtg tgcgctgctt ccatcgcact
2581 cacccgcctg cgggctgcgc gtgcggtggc gtacgcatca tgcatccagt cagcaataac
2641 ctccatacta caaattgctg cctcggctct tgtggtcaac agggctgtga aaagaatgtt
2701 tggcacacgc actgctgctc tgtccttaga gggccccccc aaggaacaca agtgcagagt
2761 ccaccaggct aaagccgcag ggaaagggcc cattggccat gatgatatgg ttgaaaagta
2821 tggactgtgt gagactgagg aggacgaaga agtggtccac actgagatgc catctgccac
2881 catagaaggc aagaacaaag gaaagaacaa gaaggggcgt ggccggaaga acaactacaa
2941 tgccttttcc cgtagaggac tcaatgatga agagtacgaa gagtacaaga aaatacggga
3001 agagaagggt ggcaactaca gcatccagga gtacctagag gataggcaaa ggtacgaaga
3061 ggagcttgca gaggtccagg caggtggaga cggaggaatc ggtgaaaccg aaatggaaat
3121 ccgacataga gtattctaca agtctaagag caagaaacac caccaggaag agcggcgcca
3181 actggggtta gtcacaggtt ccgacattcg aaaaaggaaa ccaatcgatt ggaccccccc
3241 taagtcagca tgggcagatg atgatcgtga agtggactac aatgagagga tcaactttga
3301 agcgcccccc accttgtgga gccgggtcac aaagtttgga tctggatggg gcttctgggt
3361 tagccccaca gtcttcataa ccacaacaca tgttatacca accagtgcaa aggaattctt
3421 tggcgagccc cttgccagta tagccatcca cagggccgga gaattcaccc tcttcaggtt
3481 ttctaagaag atcaggcccg atctcacggg catgatcctt gaggaaggtt gtccagaagg
3541 cacggtgtgc tcagtgctaa taaagaggga ttccggcgag ctactaccac tagctgtaag
3601 gatgggcgcc atagcatcaa tgcgcataca gggtcgcctt gtccatgggc agtctggtat
3661 gttgctcact ggggctaatg ctaagggcat ggaccttggg accatcccag gggattgtgg
3721 agctccttat gtctacaaga gagcaaatga ctgggtggtc tgtggtgtac acgctgccgc
3781 tactaaatca ggcaacacag tagtgtgcgc cgtccaagcc agtgaggggg aaaccacgct
3841 tgaaggaggt gacaaaggcc actatgccgg acatgagata gtcaaacatg gatgtggacc
3901 agccctatca accaaaacaa aattctggaa atcatctcct gaaccactgc cccctggggt
3961 ctacgagccc gcataccttg gtggccggga tccaagggtg agtggtggtc cttcgctcca
4021 acaggtgtta cgggatcagt tgaagccatt tgctgagcca cgggggcgta tgccagaacc
4081 aggtctcttg gaggccgcag ttgagactgt gacctcatca ctagagcagg ttatggacac
4141 cccagtgccg tggagttaca gcgatgcgtg ccaatccctc gataaaacca ccagttctgg
4201 tttcccccac cataagagga agaatgatga ctggaatggc accgccttca ttagggaact
4261 aggagaacaa gcagcgcacg ctaacaacat gtatgaacaa gccaaaagca tgaagcctat
4321 gtacacggca gcgcttaagg atgaattagt gaagccagaa aaagtgtacc aaaaagtgaa
4381 aaagcgcttg ctctgggggg cggacctagg aacagtgatc cgggctgcac gagcttttgg
4441 cccattttgt gatgccataa agtctcacac aatcaaacta cctatcaaag ttgggatgaa
4501 ttcaattgag gacgggccac taatctatgc agaacattca aagtataagt accactttga
4561 tgcagattat acagcttggg attcgacaca aaacaggcaa attatgacag agtcattctc
4621 catcatgtgc cgtttgactg cttctccaga attggcctca gtggtagcgc aagacctgct
4681 tgcaccctca gaaatggacg ttggtgacta cgtcattagg gtgaaggaag gccttccatc
4741 tggttttcca tgtacatcac aggtcaatag cataaatcac tggttaataa ccttatgtgc
4801 cctctctgaa gtgactggtc tatcaccaga tgttattcag tccatgtcat acttttcttt
4861 ctatggtgat gatgaaatag tttccactga catagagttt gacccagcaa agttgacaca
4921 agtcctcaaa gaatacggcc tcaaacctac ccgacctgat aagagcgaag gtccaataat
4981 tgtaagaaag aatgtggatg gcctagtctt tttacgccgt accatttccc gtgatgccgc
5041 ggggttccag gggcgactag accgggcatc cattgaaagg cagatctatt ggaccagagg
5101 gcccaaccac tcagaccctt ttgaaacctt agtgccccac cagcaaagaa aagtccaatt
5161 gatatcactg ctgggtgagg cctcattgca tggtgaaaag ttctacagaa aaatttctag
5221 caaagtcatc caagagatca agacaggggg ccttgaaatg tacgtaccag ggtggcaagc
5281 catgttccgc tggatgcggt tccatgatct tggtctgtgg acaggagatc gcaatctcct
5341 acccgaattt gtaaatgatg atggcgtcta aggacgcccc aacatcccct gatggcgcca
5401 gtggcgctgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg
5461 ttgcgggtgc ttcaacagca gtcgcaacag ctgggcaagt taatatgatt gacccatgga
5521 ttttcaataa cttcgtccag gcaccccaag gagaatttac tatttcccct aataataccc
5581 ccggtgacat tttgtttgat ttacaattag gaccccacct taatccattt ctagcccacc
5641 tctcacaaat gtataatggt tgggtcggca atatgcgtgt acgtatattg ttggcaggga
5701 atgcttttac agctggtaag ataatcattt gctgtgtccc ccctggcttt gatgctagaa
5761 tacttacaat agcccaagca actctctttc cacacttgat tgctgatgtt aggactcttg
5821 agcctgtgga gctccctctg gaggacgtgc gcaacgttct ctatcacaac agcagccagc
5881 cgcagccaac aatgcggttg gtagctatgt tgtacactcc cctccgcact ggtggtggct
5941 ccggaggtac tgatgccttt gtggttgcgg gcagggtgct cacgtgcccc gcccctgatt
6001 tcagctttct gtttctcgtc cccccctccg ttgagcagaa gactagggtt tttagtgtcc
6061 ccaacatacc cctgaaagac ctttcaaatt ctcgtgtccc tgtgcctata cagggcatgt
6121 tcatgtcccc agatgtcaat cagtcagtcc agttccagaa cgggcgctgc cagatcgatg
6181 gtcaactcca gggcactacc cctgtctcgc tcagtcaact ttgcaagatt aggggtaaga
6241 cttcaagcaa tgccagggta ctcaacttaa gtgaggtgga tggcacaccc tttatccctc
6301 ttgagtctcc agcaccagtt ggttttcccg acttaggagg ttgtgactgg catgtaaact
6361 tcactttcca ggctcagaat caggacccat ctcaaagtgt gacctttgca actaatgatg
6421 ctagctttgt tccctactta ggcagcattt ctcctcacaa tgggggggat tttcatgcag
6481 gtgacatcat aggcagcctt ggctggattt cagccccgtc tgacaataca caacttaatg
6541 tctggacaat accaaagtat gggtctagtc tcccagatgt cactcacctt gcacctgctg
6601 tgttcccccc aggctttggg gaggtgattc tgtacttcta ctctacattc ccaggttctg
6661 gacaacctag tcagcttcaa gtgccatgcc tgttgcctca ggagttcatc acccacttct
6721 gcaatgaaca ggctcccatc gctggggaag ctgctctcct ccattacgtg gaccctgaca
6781 cgggacggaa cctgggggaa ttcaaactct atcctgatgg gttcatgacc tgtgtcccca
6841 atagtgttag tagtggccct caaacccttc ctatcaatgg agtctttgtc tttgtttcat
6901 gggtatccag attttatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg
6961 gactgcggcg catataatgg cccaagctgt catcggtgcc atagccgcat ctgccgctgg
7021 tagtatactg ggggcaggca tacaggctgg tgctgaggct ggtctccagg ctcaacggta
7081 ccagcaagac ttgcaattgc agcaaaactc tttcaagcat gatagggaaa tgttaggtta
7141 tcaggttcag gctagtaatg ctcttttagc taagaatctt aacactagat atgctcttct
7201 gcaggcaggg ggtctgtcta gtgctgatgc tgctcgggca gtggctggtg ctcctgtcac
7261 ccgtatagtg gactggaatg gcacgcggat tgcagcgcca acctcgagca ccactacact
7321 tagatctggt ggttttatgg ctgtccctat accattgtct tcaaagacca agcaaccagt
7381 gatgtctggg caggataatc caaattatgc tgcttcttct atctctagaa ctgcttcatg
7441 ggtacaatct caaaattcta tgagatctgt ttctcctttt cacagtgatg ctctgagaac
7501 cgtgtgggtc acaccaccag gttcgtcatc aacttcatct gtgcaatcta gtttttatgg
7561 tgtttttaat acagataggt tgcctctgtt cgcaaacaga aggtgatatt tttgtaatag
7621 gatgccggtg ggcaccatat tcagatttaa ttttaattgg atattttaat tacaatttgg
7681 cttaattggt gtt
//