Typing tool
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Complete norovirus genomes
AB067543 | GII.8 | ||
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GII.P8 |
ORF1: 1..499 ORF2: 480..2093 ORF3: 2093..2866LOCUS AB067543 2919 bp RNA linear VRL 26-JUL-2016 DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds, strain:U25GII. ACCESSION AB067543 VERSION AB067543.1 KEYWORDS . SOURCE Norwalk virus ORGANISM Norwalk virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus. REFERENCE 1 AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M., Uchida,K., Natori,K., Takeda,N. and Katayama,K. TITLE Genogroup-specific PCR primers for detection of Norwalk-like viruses JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002) PUBMED 11742657 REFERENCE 2 (bases 1 to 2919) AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B. TITLE Direct Submission JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center; Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan (E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480) FEATURES Location/Qualifiers source 1..2919 /organism="Norwalk virus" /mol_type="genomic RNA" /strain="U25GII" /db_xref="taxon:11983" gene <1..499 /gene="RdRp" CDS <1..499 /gene="RdRp" /codon_start=2 /product="RNA dependent RNA polymerase" /protein_id="BAB84157.1" /translation="IVSTDINLDPEKLTRKLREYGLVPTRPDKTEGPLVITQDLNGLT FLRRTIVRDPAGWFGKLDRDSILRQLYWTRGPNHENPFESMIPHSQRATQLMALLGEA SLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPENVN EDGVE" gene 480..2093 /gene="ORF2" CDS 480..2093 /gene="ORF2" /codon_start=1 /protein_id="BAB84158.1" /translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ LNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFEFNFLVPP SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT TLQPVSICGFRGTLQTRLADQPNYTYQVHLENLDGSPVDPTDEVPAPLGTPDFQAQLF GVISQRSSDNATRAHEARVNTNDPTFAPQIAQVRFKSPSNDFFDNEPIKFTPVGISVD SQNSYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL PQEWVAHFYQEAATAQTDVALIRFVNPDTGRVLFEGKLHKQGFITISNSGDHPIVMPA NGYFRFEAWVNQFYSLAPVGTGSGRRRIQ" gene 2093..2866 /gene="ORF3" CDS 2093..2866 /gene="ORF3" /codon_start=1 /protein_id="BAB84159.1" /translation="MAGAFLAGLAGDVVTSGIGSLINAGANAVNQKVEYDFNRQLQEA SFKHDKEMLNAQINATTKLQRDMIAIKQGVLTAGGFSPTDAARGSINAPTTKILDWNG SRYWAPGSMRTTAYSGNFTSQGVKQPTPIVKSVKPQVQQSPAPSSVYSVGSVRSQSTQ STQLTGSGTVSRAPTPSTTTTLSRTSEWVRSQNDRLSPFMGGALQTAFVTPPSSKASS SSGTVSTVPREILDSWTPAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 aatagtcagc acagacataa acctggatcc ggaaaaactc accaggaaac tgagggagta 61 tggcctcgtc ccaactaggc cagacaaaac tgagggccca cttgtaatta cccaggattt 121 gaatggcctc acattcctga gacgaaccat agtgcgggac cccgcaggat ggtttggcaa 181 attggaccgt gactccatcc taaggcagtt gtattggacc agagggccca accatgagaa 241 cccctttgaa agcatgattc cccactccca gagagcaacc cagctaatgg ccctccttgg 301 ggaagcctcg ttgcatggtc cccagtttta caaaaaggtg agtaaaatgg tcatcaatga 361 gatcaagagt ggtggtctgg agttttacgt gcccagacag gaggccatgt tcagatggat 421 gagattttca gacctcagca cgtgggaggg cgatcgcaat ctggctcccg agaatgtgaa 481 tgaagatggc gtcgaatgac gcagctccat cgaatgatgg cgcggctggc ctcgtaccag 541 agatcaacca tgaggtcatg gccatagaac ctgttgcagg ggcctcttta gcagcccctg 601 tcgtaggaca actcaatata attgatccct ggattagaaa taattttgtg caagcccctg 661 ctggagaatt tactgtttca cctagaaatg ctccaggtga atttttatta gatctagagt 721 taggccctga gttgaacccc taccttgctc accttgcacg catgtataat gggcatgcag 781 gtggtatgga ggtgcagata gtgcttgctg ggaatgcgtt cacagcgggc aaaatcctgt 841 ttgcagttat accacctgga ttcccctatg aaaatttgtc acctgcacaa ttgaccatgt 901 gcccgcatgt agtggtggat gtgaggcagc ttgaaccaat cttgctgccc atgccagaca 961 tccgcaatac cttcttccat tacaatcaga gcaacgggcc aaaacttagg ttagtagcta 1021 tgctttacac acccctaagg gctaataatg ctggtgaaga tgttttcaca gtttcttgca 1081 gggttctgac ccgcccatca ccagactttg aatttaattt ccttgtcccc ccttctgttg 1141 aatctaagac taaagctttt acactcccaa ttcttaagat atctgagatg acaaattcaa 1201 ggtttcccat accagttgac cagatgtata ctagtaggaa tgaaaatata gttgttcaac 1261 cacagaatgg tagggtgaca cttgatggag agctacaggg cacaaccaca ctacaaccgg 1321 tgtccatttg tgggttccga gggacactgc agaccaggct ggcagaccaa ccaaattaca 1381 cataccaagt acaccttgag aatttggacg gctcacccgt cgacccgaca gatgaagtcc 1441 cagccccttt gggaacacca gatttccagg cccagctgtt tggagttatc agtcaaagga 1501 gtagtgacaa tgccaccagg gcacatgagg ccagggtcaa caccaacgat cccaccttcg 1561 cacctcagat cgcccaggtg cgtttcaaat caccatccaa cgacttcttt gacaatgaac 1621 ccattaaatt cacaccagtt gggattagtg ttgatagcca aaacagctac aaccaatggc 1681 tccttcccag gtatggtggg cacctgacaa acaacactca cctggccccc tctgtgtccc 1741 caatgttccc cggcgagcag attctcttct tccgctcgtt catgccaggt gctagtggtc 1801 acactgatgg tgctattgac tgccttttgc cacaagaatg ggttgcccat ttctatcagg 1861 aggccgcgac tgcgcaaaca gacgtggctc tgatcagatt tgtgaatccc gacacaggca 1921 gagtgttatt tgaagggaag ttacacaagc agggctttat aaccatctct aacagtgggg 1981 accaccctat tgttatgccc gctaatgggt acttcaggtt tgaggcatgg gttaaccagt 2041 tttattctct cgcccccgtg ggaactggaa gtgggcgcag aaggatccaa taatggctgg 2101 agcttttctt gcaggtctgg ctggtgatgt ggtgacctct ggcatcgggt cgctcatcaa 2161 tgcaggtgct aatgcagtaa accaaaaggt tgaatatgac ttcaataggc aactccaaga 2221 agcttctttc aaacatgaca aggagatgtt gaatgcccag atcaatgcca caaccaaatt 2281 gcagagggac atgatcgcca tcaagcaggg ggtcttgacc gctggcggct tttcccccac 2341 tgatgctgca agaggttcca tcaatgctcc aaccaccaaa attcttgact ggaatgggtc 2401 caggtactgg gcgccaggat caatgagaac aacagcatac tctggtaatt tcacctcaca 2461 aggagttaag cagcccacac ctatagttaa atctgtgaaa cctcaagtac agcaatctcc 2521 tgccccttct tctgtttatt ctgtagggtc tgttaggtcg caatcaacac aatcaaccca 2581 attgacaggg tcagggactg tatcaagggc acccactccc tcaacaacta caacattgtc 2641 taggacaagt gagtgggtaa ggagtcaaaa tgatagactg agccccttta tgggaggcgc 2701 gcttcagaca gctttcgtca cgcccccatc gagtaaggct tcgtcttcat caggaacagt 2761 ctcaaccgtc cctagagaaa ttttggactc ctggactcct gcatttaaca cgcgcaggca 2821 gccgctcttc gctcacatac gtaagcgagg ggagtcacgg gcttagtgaa aagaatgatt 2881 tggttagatt atccttcttt cttacctatc ttatctttt //