Typing tool
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Typing tool
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Complete norovirus genomes
| AB067543 | GII.8 | |
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| GII.P8 |
ORF1: 1..499
ORF2: 480..2093
ORF3: 2093..2866
LOCUS AB067543 2919 bp RNA linear VRL 26-JUL-2016
DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds,
strain:U25GII.
ACCESSION AB067543
VERSION AB067543.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M.,
Uchida,K., Natori,K., Takeda,N. and Katayama,K.
TITLE Genogroup-specific PCR primers for detection of Norwalk-like
viruses
JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002)
PUBMED 11742657
REFERENCE 2 (bases 1 to 2919)
AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center;
Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan
(E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480)
FEATURES Location/Qualifiers
source 1..2919
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="U25GII"
/db_xref="taxon:11983"
gene <1..499
/gene="RdRp"
CDS <1..499
/gene="RdRp"
/codon_start=2
/product="RNA dependent RNA polymerase"
/protein_id="BAB84157.1"
/translation="IVSTDINLDPEKLTRKLREYGLVPTRPDKTEGPLVITQDLNGLT
FLRRTIVRDPAGWFGKLDRDSILRQLYWTRGPNHENPFESMIPHSQRATQLMALLGEA
SLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPENVN
EDGVE"
gene 480..2093
/gene="ORF2"
CDS 480..2093
/gene="ORF2"
/codon_start=1
/protein_id="BAB84158.1"
/translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ
LNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD
IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFEFNFLVPP
SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT
TLQPVSICGFRGTLQTRLADQPNYTYQVHLENLDGSPVDPTDEVPAPLGTPDFQAQLF
GVISQRSSDNATRAHEARVNTNDPTFAPQIAQVRFKSPSNDFFDNEPIKFTPVGISVD
SQNSYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL
PQEWVAHFYQEAATAQTDVALIRFVNPDTGRVLFEGKLHKQGFITISNSGDHPIVMPA
NGYFRFEAWVNQFYSLAPVGTGSGRRRIQ"
gene 2093..2866
/gene="ORF3"
CDS 2093..2866
/gene="ORF3"
/codon_start=1
/protein_id="BAB84159.1"
/translation="MAGAFLAGLAGDVVTSGIGSLINAGANAVNQKVEYDFNRQLQEA
SFKHDKEMLNAQINATTKLQRDMIAIKQGVLTAGGFSPTDAARGSINAPTTKILDWNG
SRYWAPGSMRTTAYSGNFTSQGVKQPTPIVKSVKPQVQQSPAPSSVYSVGSVRSQSTQ
STQLTGSGTVSRAPTPSTTTTLSRTSEWVRSQNDRLSPFMGGALQTAFVTPPSSKASS
SSGTVSTVPREILDSWTPAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 aatagtcagc acagacataa acctggatcc ggaaaaactc accaggaaac tgagggagta
61 tggcctcgtc ccaactaggc cagacaaaac tgagggccca cttgtaatta cccaggattt
121 gaatggcctc acattcctga gacgaaccat agtgcgggac cccgcaggat ggtttggcaa
181 attggaccgt gactccatcc taaggcagtt gtattggacc agagggccca accatgagaa
241 cccctttgaa agcatgattc cccactccca gagagcaacc cagctaatgg ccctccttgg
301 ggaagcctcg ttgcatggtc cccagtttta caaaaaggtg agtaaaatgg tcatcaatga
361 gatcaagagt ggtggtctgg agttttacgt gcccagacag gaggccatgt tcagatggat
421 gagattttca gacctcagca cgtgggaggg cgatcgcaat ctggctcccg agaatgtgaa
481 tgaagatggc gtcgaatgac gcagctccat cgaatgatgg cgcggctggc ctcgtaccag
541 agatcaacca tgaggtcatg gccatagaac ctgttgcagg ggcctcttta gcagcccctg
601 tcgtaggaca actcaatata attgatccct ggattagaaa taattttgtg caagcccctg
661 ctggagaatt tactgtttca cctagaaatg ctccaggtga atttttatta gatctagagt
721 taggccctga gttgaacccc taccttgctc accttgcacg catgtataat gggcatgcag
781 gtggtatgga ggtgcagata gtgcttgctg ggaatgcgtt cacagcgggc aaaatcctgt
841 ttgcagttat accacctgga ttcccctatg aaaatttgtc acctgcacaa ttgaccatgt
901 gcccgcatgt agtggtggat gtgaggcagc ttgaaccaat cttgctgccc atgccagaca
961 tccgcaatac cttcttccat tacaatcaga gcaacgggcc aaaacttagg ttagtagcta
1021 tgctttacac acccctaagg gctaataatg ctggtgaaga tgttttcaca gtttcttgca
1081 gggttctgac ccgcccatca ccagactttg aatttaattt ccttgtcccc ccttctgttg
1141 aatctaagac taaagctttt acactcccaa ttcttaagat atctgagatg acaaattcaa
1201 ggtttcccat accagttgac cagatgtata ctagtaggaa tgaaaatata gttgttcaac
1261 cacagaatgg tagggtgaca cttgatggag agctacaggg cacaaccaca ctacaaccgg
1321 tgtccatttg tgggttccga gggacactgc agaccaggct ggcagaccaa ccaaattaca
1381 cataccaagt acaccttgag aatttggacg gctcacccgt cgacccgaca gatgaagtcc
1441 cagccccttt gggaacacca gatttccagg cccagctgtt tggagttatc agtcaaagga
1501 gtagtgacaa tgccaccagg gcacatgagg ccagggtcaa caccaacgat cccaccttcg
1561 cacctcagat cgcccaggtg cgtttcaaat caccatccaa cgacttcttt gacaatgaac
1621 ccattaaatt cacaccagtt gggattagtg ttgatagcca aaacagctac aaccaatggc
1681 tccttcccag gtatggtggg cacctgacaa acaacactca cctggccccc tctgtgtccc
1741 caatgttccc cggcgagcag attctcttct tccgctcgtt catgccaggt gctagtggtc
1801 acactgatgg tgctattgac tgccttttgc cacaagaatg ggttgcccat ttctatcagg
1861 aggccgcgac tgcgcaaaca gacgtggctc tgatcagatt tgtgaatccc gacacaggca
1921 gagtgttatt tgaagggaag ttacacaagc agggctttat aaccatctct aacagtgggg
1981 accaccctat tgttatgccc gctaatgggt acttcaggtt tgaggcatgg gttaaccagt
2041 tttattctct cgcccccgtg ggaactggaa gtgggcgcag aaggatccaa taatggctgg
2101 agcttttctt gcaggtctgg ctggtgatgt ggtgacctct ggcatcgggt cgctcatcaa
2161 tgcaggtgct aatgcagtaa accaaaaggt tgaatatgac ttcaataggc aactccaaga
2221 agcttctttc aaacatgaca aggagatgtt gaatgcccag atcaatgcca caaccaaatt
2281 gcagagggac atgatcgcca tcaagcaggg ggtcttgacc gctggcggct tttcccccac
2341 tgatgctgca agaggttcca tcaatgctcc aaccaccaaa attcttgact ggaatgggtc
2401 caggtactgg gcgccaggat caatgagaac aacagcatac tctggtaatt tcacctcaca
2461 aggagttaag cagcccacac ctatagttaa atctgtgaaa cctcaagtac agcaatctcc
2521 tgccccttct tctgtttatt ctgtagggtc tgttaggtcg caatcaacac aatcaaccca
2581 attgacaggg tcagggactg tatcaagggc acccactccc tcaacaacta caacattgtc
2641 taggacaagt gagtgggtaa ggagtcaaaa tgatagactg agccccttta tgggaggcgc
2701 gcttcagaca gctttcgtca cgcccccatc gagtaaggct tcgtcttcat caggaacagt
2761 ctcaaccgtc cctagagaaa ttttggactc ctggactcct gcatttaaca cgcgcaggca
2821 gccgctcttc gctcacatac gtaagcgagg ggagtcacgg gcttagtgaa aagaatgatt
2881 tggttagatt atccttcttt cttacctatc ttatctttt
//