Typing tool
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Typing tool
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Complete norovirus genomes
| AB067542 | GII.3 | |
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| GII.P3 |
ORF1: 1..499
ORF2: 480..2126
ORF3: 2126..2890
LOCUS AB067542 2927 bp RNA linear VRL 26-JUL-2016
DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds,
strain:U201GII.
ACCESSION AB067542
VERSION AB067542.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1
AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M.,
Uchida,K., Natori,K., Takeda,N. and Katayama,K.
TITLE Genogroup-specific PCR primers for detection of Norwalk-like
viruses
JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002)
PUBMED 11742657
REFERENCE 2 (bases 1 to 2927)
AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center;
Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan
(E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480)
FEATURES Location/Qualifiers
source 1..2927
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="U201GII"
/db_xref="taxon:11983"
gene <1..499
/gene="RdRp"
CDS <1..499
/gene="RdRp"
/codon_start=2
/product="RNA dependent RNA polymerase"
/protein_id="BAB84154.1"
/translation="IVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLT
FLRRTVTRDPAGWFGKLEQSSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGES
SLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVN
EDGVE"
gene 480..2126
/gene="ORF2"
CDS 480..2126
/gene="ORF2"
/codon_start=1
/protein_id="BAB84155.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTPTPRLFNHRWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEITTESDDFDTNQS
TKFTPVGIGVDNEAEFQQWSLPNYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2126..2890
/gene="ORF3"
CDS 2126..2890
/gene="ORF3"
/codon_start=1
/protein_id="BAB84156.1"
/translation="MAGAFIAGLAGDMFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLSAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWSG
TRYWAPNAASTTSMSGGFTSQVVHRTTPDFKTSQAPKFTPSSGSSVRSSSTQLTNLSS
HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gattgtaagc actgacataa aattggaccc agagaaactg actgcaaaac ttaaagagta
61 cggcctcaaa cccacccggc ccgacaagac cgaggggccg ctggtgatca gtgaagacct
121 gaatgggtta acgttcctcc gccgaacagt cacccgtgac ccagcaggtt ggtttggaaa
181 gctggagcaa agttccatcc tcaggcagct atactggaca aggggaccta accatgaaga
241 ccccagtgaa accatgatac cacatgcgca gagacccgtg cagctcatgg cactactggg
301 agaatcctcc ctgcatggac cctcattcta cagcaaggtc agcaagctgg ttatatctga
361 acttaaggag ggaggaatgg atttttatgt gcccagacaa gagtcaatgt ttaggtggat
421 gaggttctca gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa
481 tgaagatggc gtcgaatgac gctgctccat ctaatgatgg tgccgccggc ctcgtcccag
541 agatcaacaa tgaggcaatg gcgctagagc cagtggcggg cgcagcgata gcagcgcccc
601 tcactggcca gcaaaatata attgatccct ggattatgaa taattttgtg caagcacctg
661 gtggtgagtt tacagtgtca cctaggaatt cccctggtga agtgcttctt aatttggaat
721 taggtccaga aataaacccc tatttggctc atcttgctag aatgtacaat ggttatgcag
781 gtggatttga agtgcaagtg gtcctagctg gaaatgcgtt tacagcagga aaggttatct
841 ttgcagctat accccctaat ttccctattg acaatctgag cgcggcacag atcacaatgt
901 gcccgcacgt gattgtggat gtcaggcagt tggaaccaat caatctcccg atgcctgatg
961 tccgcaacaa tttctttcat tataatcaag gttctgattc aagattacgt ttgattgcaa
1021 tgttgtatac acctcttagg gcaaataatt ctggagatga tgttttcact gtgtcttgta
1081 gggtgttaac taggcccagc cctgatttct cgttcaattt tcttgtccca cccactgtgg
1141 aatcaaagac aaagcttttt accctcccca ttttaaccat ctctgaaatg tccaattcca
1201 ggtttccagt tccaattgac tctttacaca ccagcccaac tgagaatata gttgtccagt
1261 gccaaaatgg gcgcgtcact cttgacggtg agttaatggg caccacccaa ctcttaccga
1321 gccaaatatg tgctttcagg ggcacactca ctagatcaac aagcagggcc agcgaccaag
1381 ccgacacacc aacccctagg ctattcaacc atcgttggca catacaattg gacaatctaa
1441 atggaactcc ctacgaccct gcagaggaca taccagctcc tttgggcaca ccagacttcc
1501 ggggcaaggt ctttggcgtg gccagccaga gaaaccccga cagcacaaca agggcacatg
1561 aagcaaaagt ggacacaaca tctggccgct tcaccccaaa attgggctcc ttagaaataa
1621 ccactgagtc tgatgacttt gacacaaacc agtcaacaaa attcacccca gttggcatcg
1681 gggttgacaa tgaggcagaa tttcagcaat ggtccttacc caactattct ggtcagttta
1741 ctcataatat gaacttagcc ccagctgtcg cccccaattt tcctggtgaa cagctacttt
1801 tcttccgatc acagctgcca tcctctggtg ggcggtctaa cggggtccta gactgcttgg
1861 tcccccagga atgggttcaa cacttttacc aagaatcagc ccccgcccaa acgcaggtgg
1921 ccctggttag gtatgtcaac cctgacactg gcagagtgct atttgaggct aagctacaca
1981 aattgggttt tatgactata gcaaagaatg gtgactcccc aattactgtc cctccaaatg
2041 gatactttag atttgaatct tgggttaacc ccttttacac acttgccccc atgggaactg
2101 gaaacgggcg tagaaggatt caataatggc tggagctttt atagcaggat tggctggtga
2161 catgttcaca aatactgtgg ggtctttggt taatgcaggg gccaatgcta ttaatcaaaa
2221 agttgatttt gaaaataata aatatttgca aaatgcttct tttaatcatg ataaggagat
2281 gttaagtgca caaattgagg caacaaagag gctgcaggct gacatgattg caatcaaaca
2341 aggggtcttg accgctggcg gcttttcccc cactgatgca gcacgtgggg caattaatgc
2401 tccaatgaca aaagttttag attggagtgg aacaaggtac tgggcaccaa acgccgcctc
2461 cacaacttca atgtcaggtg gcttcacaag ccaagttgtg cacagaacca caccagattt
2521 taaaacgagc caggccccca aattcacacc cagcagtggg tcttcagtga gatcaagctc
2581 aacccaactc accaacttga gctcacactc atccgggtcg tcccgatcca gcgggtctac
2641 ggttgtcagc tcgctgccgt cctccagtag gactagggac tgggtcaacc aacaaaatct
2701 caatttggaa ccacacatgc ctggatctct caggacagct tttgtcactc caccatctag
2761 cacagcctct agttcaggca cagtctcaac cgtgcccaaa aatgttttgg actcctggac
2821 atctgcgttt aacacgcgca gacagccgct gtttgcacac cttcgtagaa ggggggagtc
2881 aaatgtttag tgaaaagatt attcctaaat ttgatttaga atctttt
//