Typing tool
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Typing tool
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Complete norovirus genomes
| AB067540 | GII.6 | |
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| GII.P6 |
ORF1: 1..499
ORF2: 480..2123
ORF3: 2123..2899
LOCUS AB067540 2947 bp RNA linear VRL 26-JUL-2016
DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds,
strain:U17GII.
ACCESSION AB067540
VERSION AB067540.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1
AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M.,
Uchida,K., Natori,K., Takeda,N. and Katayama,K.
TITLE Genogroup-specific PCR primers for detection of Norwalk-like
viruses
JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002)
PUBMED 11742657
REFERENCE 2 (bases 1 to 2947)
AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center;
Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan
(E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480)
FEATURES Location/Qualifiers
source 1..2947
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="U17GII"
/db_xref="taxon:11983"
gene <1..499
/gene="RdRp"
CDS <1..499
/gene="RdRp"
/codon_start=2
/product="RNA dependent RNA polymerase"
/protein_id="BAB84148.1"
/translation="IVSTDINLDPSKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLT
FLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEA
SLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPESVN
EDGVE"
gene 480..2123
/gene="ORF2"
CDS 480..2123
/gene="ORF2"
/codon_start=1
/protein_id="BAB84149.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNETIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTPRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGSSVGATRAHEVHIDTTNPRYTPKLGSVLMYSESSDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYALTPMGTGQGRRRVQ"
gene 2123..2899
/gene="ORF3"
CDS 2123..2899
/gene="ORF3"
/codon_start=1
/protein_id="BAB84150.1"
/translation="MAGAFFAGLAGDAITNGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPTDAARGAVNAPITKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLSRSDSPKVKINSDSASVYSSTSTAPSQST
HSTALTAGSGSSRTTSSSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSRA
SSNGSVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gattgtgagc actgacatca accttgaccc ttcaaaactg acacagaaac tcagggagta
61 tggtctggtc cccacccgac ctgacaaaac tgaaggcccc ctggtcataa ctgaggacct
121 caccggccta acattcctgc gcaggtcgat tgcgcgggac cccgctgggt ggtttgggaa
181 gctggatcaa gactcaattc tcaggcagtt gtattggaca agagggccca accatgagaa
241 cccatatgaa agcatggtcc cccactccca acgggccaca caactcatgg cccttcttgg
301 tgaagcttca ttacacggac cccaattcta caagaaggtc agtaagatgg ttatcagtga
361 gatcaagagt ggtggtctgg agttttatgt gcccagacaa gaggccatgt ttaggtggat
421 gagattctct gacctcagca catgggaggg cgatcgcaat cttgctcccg agagtgtgaa
481 tgaagatggc gtcgaatgac gctgctccat cgaatgatgg tgctgccaac ctcgtaccag
541 aggccaacaa tgaggttatg gcacttgaac cggtggtggg agcctcaatt gcagctcctg
601 tcgtcggtca acaaaatata attgacccct ggattagaga aaattttgtt caggcaccac
661 agggtgagtt tactgtttca ccaagaaact cgcctggtga gatgctttta aatcttgaat
721 taggcccaga gctcaatcct tacctgagtc atttatcccg catgtataat ggttatgctg
781 gtggcatgca ggttcaggtg gtcctagctg ggaacgcgtt cacagctggt aaaatcatct
841 ttgccgccgt tccaccacat ttccctgtag agaatattag tgcagctcaa atcacaatgt
901 gcccccatgt gattgttgat gtgagacaac ttgagcctgt gcttttgccc ctccctgaca
961 taaggaatag attctttcac tacaaccagg aagacacccc ccggatgaga cttgtggcca
1021 tgttgtatac accccttaga gcaaactctg gtgaggacgt gttcacagtg tcttgcaggg
1081 tcttgacccg cccagcccct gactttgagt tcacgttctt agtgccacca accgtagaat
1141 caaagactaa gcctttcaca ctccctattt taaccctggg ggaactatcc aattccagat
1201 ttcctgctcc aatagacatg ctgtacacag atcccaatga gacaattgtg gtacaaccac
1261 aaaatggcag atgcacccta gatgggacac tccaagggac cacccagctg gtgcctaccc
1321 aaatttgctc ttttaggggc acgttaatta gccaaacgcc gaggtctgca gattcaacag
1381 attcagctcc acgggtgagg aaccaccccc tccacgttca gctgaagaac ctcgacggga
1441 caccatatga cccaacagat gaggtaccgg cagtcctggg tgccatagat ttcaaaggaa
1501 ctgtgtttgg agttgctagc cagagaaaca ccacagggag ctctgtaggg gcgacccgtg
1561 cccatgaggt gcacatagac accacaaacc ctagatacac cccaaaactt ggttctgtgt
1621 tgatgtattc tgagtctagt gattttgatg atggacaacc aactcgcttt acccccattg
1681 gcatgggagc agatgattgg caccaatggg aattgcccga atattccggt cacctcactc
1741 ttaacatgaa cctagccccc gcagttgccc ctgctttccc cggtgagcgc attctcttct
1801 tcaggtcagt ggttccatct gctggtggtt acggatcagg tcaaatagac tgcctcatcc
1861 cacaggagtg ggttcagcac ttctaccagg aggccgcccc atcacaatct gcggtggctc
1921 ttattagata tgttaaccct gacactggga gaaacatctt tgaggcaaag ctacatagag
1981 aagggttcat cactgtggca aattctggaa acaaccccat agttgtgccc ccaaatggtt
2041 atttcaggtt tgaggcctgg gtcaatcaat tctatgcact cacccccatg ggaactggac
2101 aggggcgtag gagagtccaa taatggcagg agctttcttt gctggattag caggcgacgc
2161 cataacaaat ggtgtcgggt ccctgatcaa cgctggggcc aatgcaatta atcagaaggt
2221 agaatatgat ttcaacaaac aactccaatt ggcatccttt aaacatgaca aggaaatgct
2281 gcaatcacaa gttctggcca ccaaacagct ccagcaggaa atgatgaaca taaggcaagg
2341 ggtcttgacc gctggcggct tttcccctac agatgccgcg agaggcgctg taaacgcgcc
2401 aataacaaaa attttggatt ggaatggcac aagatatttt gctccaaata gcatgaaaac
2461 aaccagttat tcgggtcagt tctccagcaa tcctgtgcac aggcaaccca ctttgtcccg
2521 ttctgattcc ccaaaagtta aaattaatag tgattctgct agtgtatata gttctacatc
2581 caccgctcct tcacaatcaa cccattctac ggctctgact gcagggtctg gatcatccag
2641 gacaacctcc tcttccacag caacttctac cctatctagg accagtgact gggtgagggg
2701 acaaaatgag aggcttagcc cgttcatgga tggtgctctc caaacaactt ttgtcacacc
2761 accatcgagc agagcttcat caaatgggtc ggtctcaacc gttcccaaag ctgttttgga
2821 ctcctggact cctatgttta acacccatag gcagcctctc ttcgctcact tgcgtaggcg
2881 aggggagtca caaatttagt gaaaagattg attaggtttt cttctccttc tttctccttt
2941 cttcttt
//