Typing tool
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Complete norovirus genomes
AB067539 | GII.6 | ||
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GII.P6 |
ORF1: 1..499 ORF2: 480..2123 ORF3: 2123..2899LOCUS AB067539 2947 bp RNA linear VRL 26-JUL-2016 DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds, strain:U16GII. ACCESSION AB067539 VERSION AB067539.1 KEYWORDS . SOURCE Norwalk virus ORGANISM Norwalk virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus. REFERENCE 1 AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M., Uchida,K., Natori,K., Takeda,N. and Katayama,K. TITLE Genogroup-specific PCR primers for detection of Norwalk-like viruses JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002) PUBMED 11742657 REFERENCE 2 (bases 1 to 2947) AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B. TITLE Direct Submission JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center; Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan (E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480) FEATURES Location/Qualifiers source 1..2947 /organism="Norwalk virus" /mol_type="genomic RNA" /strain="U16GII" /db_xref="taxon:11983" gene <1..499 /gene="RdRp" CDS <1..499 /gene="RdRp" /codon_start=2 /product="RNA dependent RNA polymerase" /protein_id="BAB84145.1" /translation="IVSTDINLDPSKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLT FLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEA SLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPESVN EDGVE" gene 480..2123 /gene="ORF2" CDS 480..2123 /gene="ORF2" /codon_start=1 /protein_id="BAB84146.1" /translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNETIVVQPQNGRCTLDGTLQGTTQ LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG AIDFKGTVFGVASQRNTTGSSVGATRAHEVHIDTTNPRYTPKLGSVLMYSESSDFDDG QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ" gene 2123..2899 /gene="ORF3" CDS 2123..2899 /gene="ORF3" /codon_start=1 /protein_id="BAB84147.1" /translation="MAGAFFAGLAGDAITNGVGSLINAGANAINQKVEYDFNKQLQLA SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPTDAARGAVNAPITKILDWNG TRYFAPNSMKTTSYSGQFSSNPVHRQPTLSRSDSPKVKINSDSASVYSSTSTAPSQST HSTALTAGSGSSRTTSSSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSRA SSNGSVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 gattgtgagc actgacatca accttgaccc ttcaaaactg acacagaaac tcagggagta 61 tggtctggtc cccacccgac ctgacaaaac tgaaggcccc ctggtcataa ctgaggacct 121 caccggccta acattcctgc gcaggtcgat tgcgcgggac cccgctgggt ggtttgggaa 181 gctggatcaa gactcaattc tcaggcagtt gtattggaca agagggccca accatgagaa 241 cccatatgaa agcatggtcc cccactccca acgggccaca caactcatgg cccttcttgg 301 tgaagcttca ttacacggac cccaattcta caagaaggtc agtaagatgg ttatcagtga 361 gatcaagagt ggtggtctgg agttttatgt gcccagacaa gaggccatgt ttaggtggat 421 gagattctct gacctcagca catgggaggg cgatcgcaat cttgctcccg agagtgtgaa 481 tgaagatggc gtcgaatgac gctgctccat cgaatgatgg tgctgccaac ctcgtaccag 541 aggccaacaa tgaggttatg gcacttgaac cggtggtggg agcctcaatt gcagctcctg 601 tcgtcggtca acaaaatata attgacccct ggattagaga aaattttgtt caggcaccac 661 agggtgagtt tactgtttca ccaagaaact cgcctggtga gatgctttta aatcttgaat 721 taggcccaga gctcaatcct tacctgagtc atttatcccg catgtataat ggttatgctg 781 gtggcatgca ggttcaggtg gtcctagctg ggaacgcgtt cacagctggt aaaatcatct 841 ttgccgccgt tccaccacat ttccctgtag agaatattag tgcagctcaa atcacaatgt 901 gcccccatgt gattgttgat gtgagacaac ttgagcctgt gcttttgccc ctccctgaca 961 taaggaatag attctttcac tacaaccagg aagacacccc ccggatgaga cttgtggcca 1021 tgttgtatac accccttaga gcaaactctg gtgaggacgt gttcacagtg tcttgcaggg 1081 tcttgacccg cccagcccct gactttgagt tcacgttctt agtgccacca accgtagaat 1141 caaagactaa gcctttcaca ctccctattt taaccctggg ggaactatcc aattccagat 1201 ttcctgctcc aatagacatg ctgtacacag atcccaatga gacaattgtg gtacaaccac 1261 aaaatggcag atgcacccta gatgggacac tccaagggac cacccagctg gtgcctaccc 1321 aaatttgctc ttttaggggc acgttaatta gccaaacgtc gaggtctgca gattcaacag 1381 attcagctcc acgggtgagg aaccaccccc tccacgttca gctgaagaac ctcgacggga 1441 caccatatga cccaacagat gaggtaccgg cagtcctggg tgccatagat ttcaaaggaa 1501 ctgtgtttgg agttgctagc cagagaaaca ccacagggag ctctgtaggg gcgacccgtg 1561 cccatgaggt gcacatagac accacaaacc ctagatacac cccaaaactt ggttctgtgt 1621 tgatgtattc tgagtctagt gattttgatg atggacaacc aactcgcttt acccccattg 1681 gcatgggagc agatgattgg caccaatggg aattgcccga atattccggt cacctcactc 1741 ttaacatgaa cctagccccc gcagttgccc ctgctttccc cggtgagcgc attctcttct 1801 tcaggtcagt ggttccatct gctggtggtt acggatcagg tcaaatagac tgcctcatcc 1861 cacaggagtg ggttcagcac ttctaccagg aggccgcccc atcacaatct gcggtggctc 1921 ttattagata tgttaaccct gacactggga gaaacatctt tgaggcaaag ctacatagag 1981 aagggttcat cactgtggca aattctggaa acaaccccat agttgtgccc ccaaatggtt 2041 atttcaggtt tgaggcctgg gtcaatcaat tctatacact cacccccatg ggaactggac 2101 aggggcgtag gagagtccaa taatggcagg agctttcttt gctggattag caggcgacgc 2161 cataacaaat ggtgtcgggt ccctgatcaa cgctggggcc aatgcaatta atcagaaggt 2221 agagtatgat ttcaacaaac aactccaatt ggcatccttt aaacatgaca aggaaatgct 2281 gcaatcacaa gttctggcca ccaaacagct ccagcaggaa atgatgaaca taaggcaagg 2341 ggtcttgacc gctggcggct tttcccctac agatgccgcg agaggcgctg taaacgcgcc 2401 aataacaaaa attttggatt ggaatggcac aagatatttt gctccaaata gcatgaaaac 2461 aaccagttat tcgggtcagt tctccagcaa tcctgtgcac aggcaaccca ctttgtcccg 2521 ttctgattcc ccaaaagtta aaattaatag tgattctgct agtgtatata gttctacatc 2581 caccgctcct tcacaatcaa cccattctac ggctctgact gcagggtctg gatcatccag 2641 gacaacctcc tcttccacag caacttctac cctatctagg accagtgact gggtgagggg 2701 acaaaatgag aggcttagcc cgttcatgga tggtgctctc caaacaactt ttgtcacacc 2761 accatcgagc agagcttcat caaatgggtc ggtctcaacc gttcccaaag ctgttttgga 2821 ctcctggact cctatgttta acacccatag gcagcctctc ttcgctcact tgcgtaggcg 2881 aggggagtca caaatttagt gaaaagattg attaggtttt cttctccttc tttctccttt 2941 cttcttt //