Typing tool
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Typing tool
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Complete norovirus genomes
| AB067538 | GII.6 | |
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| GII.P7 |
ORF1: 1..499
ORF2: 480..2132
ORF3: 2132..2911
LOCUS AB067538 2965 bp RNA linear VRL 26-JUL-2016
DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds,
strain:U4GII.
ACCESSION AB067538
VERSION AB067538.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1
AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M.,
Uchida,K., Natori,K., Takeda,N. and Katayama,K.
TITLE Genogroup-specific PCR primers for detection of Norwalk-like
viruses
JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002)
PUBMED 11742657
REFERENCE 2 (bases 1 to 2965)
AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center;
Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan
(E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480)
FEATURES Location/Qualifiers
source 1..2965
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="U4GII"
/db_xref="taxon:11983"
gene <1..499
/gene="RdRp"
CDS <1..499
/gene="RdRp"
/codon_start=2
/product="RNA dependent RNA polymerase"
/protein_id="BAB84142.1"
/translation="IVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITENLTGLT
FLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEA
SLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVN
EDGVE"
gene 480..2132
/gene="ORF2"
CDS 480..2132
/gene="ORF2"
/codon_start=1
/protein_id="BAB84143.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSPMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVPLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAADSTDSPQRARDHPLHVQVKNLGGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGPQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESNDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 2132..2911
/gene="ORF3"
CDS 2132..2911
/gene="ORF3"
/codon_start=1
/protein_id="BAB84144.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFFPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPPQHTAPPKSKLQSDSASVYSSPSTVSSQS
THSTMLSAGTGSSRSISTSTATSTLSRTSDWVRGQNERLSPFMDDALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gatcgttagc actgacataa accttgaccc catgaaactg acacagaaac tcagggagta
61 cggtctggtc cccacccgac ctgataaaac tgaaggtccc ctcgtcataa ctgaaaacct
121 caccggcctg acgttcctgc gtaggtcgat tgcacgggat ccagctgggt ggtttggaaa
181 attggatcaa gactcaattc tcaggcaatt atactggaca agggggccca atcatgagaa
241 cccgtacgag agcatggttc cccattctca gcgagccaca cagctcatgg cccttcttgg
301 tgaggcctca ttgcatggcc cccagtttta caagaaagtt agcaagatgg tcatcaatga
361 gattaagagt ggtggtctgg aattttatgt gcccagacaa gaggccatgt ttaggtggat
421 gagattctct gacctcagca catgggaggg cgatcgcaat cttgctcccg agggtgtgaa
481 tgaagatggc gtcgaatgac gccgctccat cgaatgatgg tgctgccaac ctcgtaccag
541 aggccaacaa tgaggttatg gcacttgaac cggtggtagg agcctcaatc gcagctcctg
601 ttgtcggtca gcaaaatata attgacccct ggattagaga aaattttgtc caagcaccac
661 agggcgagtt tactgtttcg ccaaggaatt cgcctggtga gatgctttta aaccttgagt
721 tgggcccaga acttaacccc tatttgagtc atttgtcccc catgtacaac ggatatgctg
781 gtggcatgca ggttcaggtg gtcctagctg ggaatgcgtt cacagctggg aaaatcatct
841 ttgccgccgt accaccacat tttcctgtgg ataatattag tgcagcccag ataactatgt
901 gtccccatgt gattgttgat gtgagacagc ttgaaccagt gcctctgccc ctccccgata
961 taaggaatag gttcttccat tacaatcagg agaacacccc ccggatgaga ctcgtggcca
1021 tgctctacac gcccctgagg gccaattctg gtgaagacgt gttcactgtg tcttgtaggg
1081 ttttgactcg ccccgctcca gattttgagt ttacattctt agtaccacca actgttgaat
1141 caaaaacaaa accttttacc ctacctattc taactcttgg tgagttgtct aactcccgtt
1201 ttccggctgc tatagatatg ctttatactg atcccaatga atcaatagtt gttcaacccc
1261 aaaatggtag gtgcactctt gatggcacat tgcaaggcac aacacaattg gttccaacac
1321 agatttgtgc ttttagaggc accctgatca gccagaccgc gagagcggcc gactcaacag
1381 attctcccca gagagcccgt gatcatccat tacacgtcca ggtcaagaac ctaggcggca
1441 cacagtatga cccaacagat gacatacctg cagtcctggg ggctattgac ttcaaaggca
1501 cagtatttgg agtggctagt cagagggatg tctctggacc acaagaacag ggccactatg
1561 ccacccgagc ccatgaagca cacattgata caactgaccc aaagtatgca cccaaattag
1621 gcacaattct tatcaaatct gaatccaatg atttcaccac aaatcaaccc attaggttca
1681 ctccagtggg catgggtgat aacaattgga ggcagtggga attacctgat tattctggca
1741 gattaacctt aaatatgaac cttgcccccg ctgtttcccc atctttccct ggtgaacgaa
1801 tccttttctt taggtctata gtaccatcag ctggaggcta cgggtctggc tatatagact
1861 gtctcatacc ccaggaatgg gtgcaacact tctaccagga agcagcacct tcacaatccg
1921 ctgtcgcact ggttaggtat gttaaccccg atactgggcg taacatcttt gaggccaagt
1981 tgcacagaga agggttcctc accgtggcca attctggaaa caatcctatt gtagttcccc
2041 ctaatggtta ttttagattt gaggcttggg ttaatcagtt ttacacactt gcccccatgg
2101 gatctggaca ggggcgtaga agggcccagt aatggctggc gccttcttcg caggattagc
2161 aggtgatgtc gtgtcgaacg gcatcggttc cctcatcaat gcaggtgcca atgcagtcaa
2221 tcaaaaggtt gagtatgatt tcaataagca acttcagatg gcatcattca aacatgacaa
2281 ggagatgtta caatcacagg tgttggcaac taaacagcta cagcaggaaa tgatgaacat
2341 aaagcaaggg atgttgaccg ctggcggctt cttccctgcg gatgctgcta gaggggctgt
2401 taatgctcca atgacaaaaa tactggactg gaatggcaca aggtattggg cacctaacag
2461 tatgaaaacc acaagctatt cagggcaatt ttctagtagc cccgtccaca ggtctcctgc
2521 tcctccccaa cacactgctc caccaaaaag taagttgcaa agtgattctg ctagtgtgta
2581 tagctccccc tctactgttt cttcacaatc aacccattca acaatgttgt ctgcaggaac
2641 tgggtcgtcc agatccatct ccacgtccac agcaacctct accttgtcta gaaccagcga
2701 ctgggttaga ggacagaatg aaaggcttag cccgttcatg gatgatgctc tccaaactac
2761 ctttgtcaca ccaccatcga gcaaggcttc atcaaatggg acggtctcga ccgtgcccaa
2821 agctgttttg gactcctgga ctcctatgtt caacacacat aggcagcctc tcttcgccca
2881 tttgcgtagg cgaggggagt cacaaattta gtgaaaagag tgattaggct ttcttcccct
2941 ttttctttct ccttttctct ctttt
//