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Typing tool
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Complete norovirus genomes
AB067536 | GII.12 | ![]() |
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GII.P12 |
ORF1: 1..499 ORF2: 480..2087 ORF3: 2087..2866LOCUS AB067536 2916 bp RNA linear VRL 26-JUL-2016 DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds, strain:U1GII. ACCESSION AB067536 VERSION AB067536.1 KEYWORDS . SOURCE Norwalk virus ORGANISM Norwalk virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus. REFERENCE 1 AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M., Uchida,K., Natori,K., Takeda,N. and Katayama,K. TITLE Genogroup-specific PCR primers for detection of Norwalk-like viruses JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002) PUBMED 11742657 REFERENCE 2 (bases 1 to 2916) AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B. TITLE Direct Submission JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center; Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan (E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480) FEATURES Location/Qualifiers source 1..2916 /organism="Norwalk virus" /mol_type="genomic RNA" /strain="U1GII" /db_xref="taxon:11983" gene <1..499 /gene="RdRp" CDS <1..499 /gene="RdRp" /note="ORF1" /codon_start=2 /product="RNA dependent RNA polymerase" /protein_id="BAB84136.1" /translation="IVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLT FLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEA ALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVN EDGVE" gene 480..2087 /gene="ORF2" CDS 480..2087 /gene="ORF2" /codon_start=1 /protein_id="BAB84137.1" /translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPTLTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELRGTT QLLPTAICPFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEN EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGERILFFRSHIPLKGGVADPVIDCLLHQ EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 2087..2866 /gene="ORF3" CDS 2087..2866 /gene="ORF3" /codon_start=1 /protein_id="BAB84138.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTAFSGGFTNASHAGTVDLTKKTSATPAPTSVSRPSSIASTVSTRSTL VSGSFNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV" ORIGIN 1 aattgtgagc acagacataa agttggaccc agaaaagttg acagcaaaac ttaaggaata 61 cgggttgaaa ccgacccgcc ctgataagac tgagggaccc cttgttatct ctgaggacct 121 gaatggccta accttcctgc ggaggactgt gacccgcgac ccagctggct ggtttggaaa 181 gttggaacag agttcaatac tcaggcaaat gtattggact aggggcccta accatgaaga 241 cccatctgaa acaatgatac cacactccca aagacccata caattgatgt ctttgctggg 301 cgaggctgca ctccacggcc cagcattcta cagcaaaatc agcaagctgg tcattgcaga 361 gctgaaggaa ggtggcatgg atttttacgt gcccagacaa gagccaatgt tcagatggat 421 gaggttctca gatctgagca cgtgggaggg cgatcgcaat ctggctccca gttttgtgaa 481 tgaagatggc gtcgagtgac gccgctccat ctaatgatgg tgcagccggt cttgtaccag 541 aggctaacaa tgagaccatg gcacttgaac cggtggctgg ggcttcaata gccgccccac 601 tcaccggtca aaacaatatt atagacccct ggattagatt aaattttgtg caggctccca 661 atggggagtt cacggtttca ccccgcaact cgcccgggga agtcctatta aacttggaat 721 taggccccga actaaatcca tacctagcac acctttctag aatgtataat ggttatgcag 781 gtggggttga ggtgcaagta ctactggctg ggaatgcgtt cacagctgga aaattggtgt 841 ttgccgcagt tccccctcat tttccattag aaaacataag ccctggccag ataactatgt 901 tccctcatgt aattattgat gttaggactt tagaaccagt tttgttgccc cttccagatg 961 ttaggaataa tttctttcat tataatcagc agaatgaacc gaggatgaga ctcgtggcaa 1021 tgctttacac tcctcttaga tctaatggtt ctggtgatga tgtatttact gtctcctgca 1081 gggtgcttac ccgaccttcc cctgattttg attttaatta cttggtccct cctaccgttg 1141 aatctaaaac taaacccttc acactcccta ccttgactat aggggagtta accaactcca 1201 ggttccctgt gcccatagat gagctctaca ccagtcccaa tgagagtctg gtggtgcaac 1261 cccagaatgg gagatgcgcg ctagatgggg agctgcgggg cacgactcag ctcctcccca 1321 cggcgatttg cccattcagg ggccggatca atcagaaggt gagtggagaa aaccatgttt 1381 ggaatatgca ggtcaccaac atcaacggga ccccttttga tccaacagag gatgtcccgg 1441 ctcccctagg caccccagat ttctctggca agctctttgg tgtactaagc cagagggacc 1501 atgataatgc ctgtaggagt catgatgcag taattgcaac caactctgcc aaatttactc 1561 caaaattggg cgctatacaa attggcacat gggaagaaga cgatgtgcac atcaaccaac 1621 ctactaagtt tactccagtt ggcttgtttg aaaatgaagg tttcaaccag tggacactcc 1681 ccaattactc tggagcctta acacttaata tggggttggc ccctcctgtg gcccccacct 1741 tccctggtga acgaatcctt ttctttagat cccacattcc tcttaaagga ggtgtggcgg 1801 acccagttat tgattgtctc ttgcaccaag agtggatcca acatctttac caagagtcgg 1861 ccccttcaca atcagatgtg gcattgatta ggtttacaaa tccagacaca ggacgtgttc 1921 tatttgaagc aaaattacac aggagtggtt acattacagt ggccaatact ggtagcagac 1981 cgattgtggt accagctaat ggttacttca ggtttgactc ttgggttaat caattctatt 2041 ctctcgcccc catgggaact ggaaatgggc gcagaagggt gcaataatgg ctggagcttt 2101 tatagcaggg cttgctggtg acatagtcac caatggcatt ggctcacttg tgaacgctgg 2161 ggctaatgca ataaatcaaa aagtagactt tgaaaataac aagcaactac agcaggcttc 2221 tttcaaccat gataaagaga tgctgcaagc tcaagtccag gccaccaaac agctgcaggc 2281 tgatatgatt gcaatcagac aaggggtgtt gaccgcgggc ggcttctccc ccactgatgc 2341 agcaagaggg gcagttaatg cacctatgac tcaggtctta gactggaacg ggaccaggca 2401 ttgggccccc ggagccacga aaaccactgc tttctccggt ggattcacca atgcttctca 2461 tgccggaact gtcgacctga ccaagaagac atcagccaca ccagccccta cgtctgtttc 2521 tagacctagc tctattgcct ctacagtctc cacccgctca accttggtta gcgggtcttt 2581 caacccttct tcttcagcta ggagttcttc tagtgtttct tctcaaccca cctcctcctc 2641 ttctcggacc agtgagtggg tgcgcagcca aaacagggca ctggagcctt acatgagggg 2701 agcgctacac acagcctatg tgacgcctcc ctctagtaga gcttctagta atggcacagt 2761 ctcaaccgtg ccaaaagagg ttttggactc ctggacatct gcatttaaca cccgcagaca 2821 accgctattc gctcatctcc gtcggagagg ggagtcacaa gtttagtgaa aagatgatct 2881 ttattttctt tcctttgaag attctttttg tctttt //