Typing tool
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Typing tool
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Complete norovirus genomes
| AB067536 | GII.12 | |
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| GII.P12 |
ORF1: 1..499
ORF2: 480..2087
ORF3: 2087..2866
LOCUS AB067536 2916 bp RNA linear VRL 26-JUL-2016
DEFINITION Norwalk virus RdRp, ORF1 and ORF2 genes, partial and complete cds,
strain:U1GII.
ACCESSION AB067536
VERSION AB067536.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1
AUTHORS Kojima,S., Kageyama,T., Fukushi,S., Hoshino,F.B., Shinohara,M.,
Uchida,K., Natori,K., Takeda,N. and Katayama,K.
TITLE Genogroup-specific PCR primers for detection of Norwalk-like
viruses
JOURNAL J. Virol. Methods 100 (1-2), 107-114 (2002)
PUBMED 11742657
REFERENCE 2 (bases 1 to 2916)
AUTHORS Kojima,S., Katayama,K., Kageyama,T., Fukushi,S. and Hoshino,F.B.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2001) Shigeyuki Kojima, BML,INC., R&D Center;
Matoba 1361-1, Kawagoe, Saitama 350-1101, Japan
(E-mail:kojima@alk.co.jp, Tel:81-49-232-0440, Fax:81-49-232-5480)
FEATURES Location/Qualifiers
source 1..2916
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="U1GII"
/db_xref="taxon:11983"
gene <1..499
/gene="RdRp"
CDS <1..499
/gene="RdRp"
/note="ORF1"
/codon_start=2
/product="RNA dependent RNA polymerase"
/protein_id="BAB84136.1"
/translation="IVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLT
FLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEA
ALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVN
EDGVE"
gene 480..2087
/gene="ORF2"
CDS 480..2087
/gene="ORF2"
/codon_start=1
/protein_id="BAB84137.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPTLTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELRGTT
QLLPTAICPFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEN
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGERILFFRSHIPLKGGVADPVIDCLLHQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 2087..2866
/gene="ORF3"
CDS 2087..2866
/gene="ORF3"
/codon_start=1
/protein_id="BAB84138.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGATKTTAFSGGFTNASHAGTVDLTKKTSATPAPTSVSRPSSIASTVSTRSTL
VSGSFNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV"
ORIGIN
1 aattgtgagc acagacataa agttggaccc agaaaagttg acagcaaaac ttaaggaata
61 cgggttgaaa ccgacccgcc ctgataagac tgagggaccc cttgttatct ctgaggacct
121 gaatggccta accttcctgc ggaggactgt gacccgcgac ccagctggct ggtttggaaa
181 gttggaacag agttcaatac tcaggcaaat gtattggact aggggcccta accatgaaga
241 cccatctgaa acaatgatac cacactccca aagacccata caattgatgt ctttgctggg
301 cgaggctgca ctccacggcc cagcattcta cagcaaaatc agcaagctgg tcattgcaga
361 gctgaaggaa ggtggcatgg atttttacgt gcccagacaa gagccaatgt tcagatggat
421 gaggttctca gatctgagca cgtgggaggg cgatcgcaat ctggctccca gttttgtgaa
481 tgaagatggc gtcgagtgac gccgctccat ctaatgatgg tgcagccggt cttgtaccag
541 aggctaacaa tgagaccatg gcacttgaac cggtggctgg ggcttcaata gccgccccac
601 tcaccggtca aaacaatatt atagacccct ggattagatt aaattttgtg caggctccca
661 atggggagtt cacggtttca ccccgcaact cgcccgggga agtcctatta aacttggaat
721 taggccccga actaaatcca tacctagcac acctttctag aatgtataat ggttatgcag
781 gtggggttga ggtgcaagta ctactggctg ggaatgcgtt cacagctgga aaattggtgt
841 ttgccgcagt tccccctcat tttccattag aaaacataag ccctggccag ataactatgt
901 tccctcatgt aattattgat gttaggactt tagaaccagt tttgttgccc cttccagatg
961 ttaggaataa tttctttcat tataatcagc agaatgaacc gaggatgaga ctcgtggcaa
1021 tgctttacac tcctcttaga tctaatggtt ctggtgatga tgtatttact gtctcctgca
1081 gggtgcttac ccgaccttcc cctgattttg attttaatta cttggtccct cctaccgttg
1141 aatctaaaac taaacccttc acactcccta ccttgactat aggggagtta accaactcca
1201 ggttccctgt gcccatagat gagctctaca ccagtcccaa tgagagtctg gtggtgcaac
1261 cccagaatgg gagatgcgcg ctagatgggg agctgcgggg cacgactcag ctcctcccca
1321 cggcgatttg cccattcagg ggccggatca atcagaaggt gagtggagaa aaccatgttt
1381 ggaatatgca ggtcaccaac atcaacggga ccccttttga tccaacagag gatgtcccgg
1441 ctcccctagg caccccagat ttctctggca agctctttgg tgtactaagc cagagggacc
1501 atgataatgc ctgtaggagt catgatgcag taattgcaac caactctgcc aaatttactc
1561 caaaattggg cgctatacaa attggcacat gggaagaaga cgatgtgcac atcaaccaac
1621 ctactaagtt tactccagtt ggcttgtttg aaaatgaagg tttcaaccag tggacactcc
1681 ccaattactc tggagcctta acacttaata tggggttggc ccctcctgtg gcccccacct
1741 tccctggtga acgaatcctt ttctttagat cccacattcc tcttaaagga ggtgtggcgg
1801 acccagttat tgattgtctc ttgcaccaag agtggatcca acatctttac caagagtcgg
1861 ccccttcaca atcagatgtg gcattgatta ggtttacaaa tccagacaca ggacgtgttc
1921 tatttgaagc aaaattacac aggagtggtt acattacagt ggccaatact ggtagcagac
1981 cgattgtggt accagctaat ggttacttca ggtttgactc ttgggttaat caattctatt
2041 ctctcgcccc catgggaact ggaaatgggc gcagaagggt gcaataatgg ctggagcttt
2101 tatagcaggg cttgctggtg acatagtcac caatggcatt ggctcacttg tgaacgctgg
2161 ggctaatgca ataaatcaaa aagtagactt tgaaaataac aagcaactac agcaggcttc
2221 tttcaaccat gataaagaga tgctgcaagc tcaagtccag gccaccaaac agctgcaggc
2281 tgatatgatt gcaatcagac aaggggtgtt gaccgcgggc ggcttctccc ccactgatgc
2341 agcaagaggg gcagttaatg cacctatgac tcaggtctta gactggaacg ggaccaggca
2401 ttgggccccc ggagccacga aaaccactgc tttctccggt ggattcacca atgcttctca
2461 tgccggaact gtcgacctga ccaagaagac atcagccaca ccagccccta cgtctgtttc
2521 tagacctagc tctattgcct ctacagtctc cacccgctca accttggtta gcgggtcttt
2581 caacccttct tcttcagcta ggagttcttc tagtgtttct tctcaaccca cctcctcctc
2641 ttctcggacc agtgagtggg tgcgcagcca aaacagggca ctggagcctt acatgagggg
2701 agcgctacac acagcctatg tgacgcctcc ctctagtaga gcttctagta atggcacagt
2761 ctcaaccgtg ccaaaagagg ttttggactc ctggacatct gcatttaaca cccgcagaca
2821 accgctattc gctcatctcc gtcggagagg ggagtcacaa gtttagtgaa aagatgatct
2881 ttattttctt tcctttgaag attctttttg tctttt
//