Typing tool
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Typing tool
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Complete norovirus genomes
| AB045603 | GII.12 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS AB045603 7521 bp RNA linear VRL 10-JAN-2009
DEFINITION Norwalk-like virus genomic RNA, complete genome, specimen_voucher:
Gifu'96.
ACCESSION AB045603
VERSION AB045603.2
KEYWORDS .
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Kuzuguchi,T., Kohyama,E. and Kawamoto,H.
TITLE COMPLETE NUCLEOTIDE ANALYSIS OF NORWALK VIRUSES (NVs) FROM HUMAN
AND SWINE IN JAPAN
JOURNAL (in) Klenk,H.-D. (Ed.);
XIITH INTERNATIONAL CONGRESS OF VIROLOGY: 9;
EDK. Medical and Scientific International Pubulisher, 75014 Paris,
France (2002)
REFERENCE 2
AUTHORS Yoda,T., Suzuki,Y., Terano,Y., Yamazaki,K., Sakon,N., Kuzuguchi,T.,
Oda,H. and Tsukamoto,T.
TITLE Precise characterization of norovirus (Norwalk-like virus)-specific
monoclonal antibodies with broad reactivity
JOURNAL J. Clin. Microbiol. 41 (6), 2367-2371 (2003)
PUBMED 12791850
REMARK Publication_Status: Available-Online
REFERENCE 3 (bases 1 to 7521)
AUTHORS Kuzuguchi,T., Kuzuguchi,T. and Kawamoto,H.
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2000) Contact:Tsuyoshi Kuzuguchi Gifu Prefectual
Institute for Bio-industrial Technology, Molecular Microbiology;
3481-2 Kamihachiya Hachiya-cho, Minokamo, Gifu 505-0004, Japan
COMMENT On Nov 7, 2003 this sequence version replaced AB045603.1.
FEATURES Location/Qualifiers
source 1..7521
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/host="Homo sapiens"
/specimen_voucher="Gifu'96 (Gifu Prefectural Institute for
Bio-industrial Technology)"
/db_xref="taxon:95340"
/country="Japan: Gifu, Gifu"
CDS 5..5104
/codon_start=1
/product="polyprotein"
/protein_id="BAC98439.1"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALRNISIKSCQIVYGGCTYMLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGRIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6692
/codon_start=1
/product="capsid protein"
/protein_id="BAC98440.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEN
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6692..7471
/note="unnamed protein product; unknown"
/codon_start=1
/protein_id="BAC98441.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGATKTTALSGGFTNASHARTVDLTKKTPATPAPTSVSRPSSVASTVSTRSTL
VSGSFNSSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaaggc ccccacgacc
181 acccacccca gaactggtca aaaagatccc tcctcctcca cccaacgggg aggatgaacc
241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctta ccactgtcag
301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
361 ggacgccaag gagccactaa ctggaacaat cctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat
481 cagcctcgcc aaggttgaac taacaccact ctctctgttt tggagaccag tgtatacacc
541 acagtatctc atctctccag acactctcag gagactgcac ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccttacc aagactggaa
721 taggaaaccc cttcccacca tggatgactc caagttgaag aaggtagcta acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc
841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ctggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact
1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcactaaag agaagatcgg
1081 gaaaatgttg tcatctgccg catccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaggcaa ttgagaacaa
1261 tcacatgact gccctcctca aagacaaaga cagcctggca acctatatga gaactcttga
1321 cctcgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg atatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggagctc tccagcagac caagacctgt tgttgttatg atatcaggca ggccagggat
1501 agggaaaacc caccttgcca gggaattggc caagagaatc gcagcttcac tcacagggga
1561 ccagcgtgtg ggtctcatcc ctcgcaatgg tgttgatcac tgggacgcat ataagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagtaatccc atccacgacg ccctcaggtt
1681 gcaagaactt gctgacacct gccccctcac gctaaattgt gacaggattg agaacaaggg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccact
1801 ggactatgtc aattttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagatgc
1861 ccctgaggtt gagaaggcaa aacgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgctcgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 ccccaccacc ttcaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtac gggttgatgg acacaatgag agttggaaga cagctcaagg atgtcaggac
2221 catgccagag ctcaaacaag cactcaggaa tatctcaatc aagagttgtc agatagtgta
2281 tggtggctgc acctatatgc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga actggccggt gccctacacc atcttaggtg
2401 tgccagaatt agatattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagacctttg
2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtctcatc cgacgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aacggcaaat actccataga
2761 ggaatacctt caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atttggtcga ggatagtcaa
3061 ctttggttca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aaacaaattc agatacacaa
3181 atcgggtgaa ttctgtcgct taaggtttcc aaaaccaatc agaactgatg tgacaggcat
3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ctactcatca agaggccaac
3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcactgtt gggggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 tctgggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg ggaatgacta
3481 cgtagtcatt ggagtccaca cggctgctgc ccgtggaggg aacactgtca tatgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaagggaa cctactgtgg
3601 tgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta agttttggag
3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctaccttg gcggcaagga
3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggaccagc tgaaaccatt
3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtt cttgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg
3901 cgcatccctc gacaagacca cttccagtgg tcacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttta caggcaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaagag ggaaagaata tgaccccagt ctatacaggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaggatcaa aaagaggctt ctctggggct cggatctggc
4141 aaccatgatc cggtgcgctc gagcgtttgg gggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cccgtcagag taggtatgaa tatgaatgag gatggtccta tcatctttga
4261 gagacactcc agatacaaat accactatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgca
4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggacg taggtgactt
4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actttctgag gttacaaacc tgtcccctga
4561 cattatccag gccaactccc tcttttcctt ctacggtgat gatgaaattg tgagcacaga
4621 cataaagttg gacccagaga agttgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgccctgac aagactgagg gaccccttgt tatctctgag gacctgaatg gcctaacctt
4741 cctgcggagg actgtgaccc gcgacccagc tggttggttt ggaaagttgg aacagagttc
4801 aatacttagg caaatgtatt ggactagggg ccctaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga
5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggtcaaaaca
5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatgga gagttcacgg
5281 tttcaccccg caactcgccc ggggaagtcc tattaaacct ggaattaggc cccgaactaa
5341 atccatacct agcacacctt tctagaatgt ataatggtta tgcaggtggg gttgaggtgc
5401 aagtactact ggctgggaat gcgttcacag ctggaaaatt ggtgtttgcc gcagttcccc
5461 ctcattttcc attagaaaac ataagccctg gccagataac tatgttccct catgtaatta
5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc agatgttagg aataatttct
5581 ttcattataa tcagcagaat gaaccgagga tgagactcgt agcaatgctt tacactcctc
5641 ttagatctaa tggttctggt gatgatgtgt ttactgtctc ctgcagggtg cttacccgac
5701 cttcccctga ttttgatttt aattacttgg tcccccctac cgttgaatct aaaactaaac
5761 ccttcacact ccctatcttg actatagggg agttaaccaa ctccaggttc cctgtgccca
5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aatgggagat
5881 gcgcgctaga tggggagctg cagggcacga ctcagctcct ccccacggcg atttgctcat
5941 tcaggggccg gatcaatcag aaggtgagtg gagaaaacca tgtttggaat atgcaggtca
6001 ccaacatcaa cgggacccct tttgatccaa cagaggatgt cccggctcct ctaggcaccc
6061 cagatttctc tggcaagctc tttggtgtac taagccagag ggaccatgat aatgcctgta
6121 ggagtcatga tgcagtaatt gcaaccaact ctgccaaatt cactccaaaa ttgggcgcta
6181 tacaaattgg cacatgggaa gaagacgatg tgcacatcaa ccaacctact aagtttactc
6241 cagttggctt gtttgaaaat gaaggtttca accagtggac actccccaat tactctggag
6301 ccttaacact caatatgggg ttggcccctc ctgtggcccc caccttccct ggtgaacaaa
6361 tccttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt
6421 gtctcttgcc ccaagagtgg atccaacatc tttaccaaga gtcggcccct tcacaatcag
6481 atgtggcatt gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat
6541 tacacaggag tggttacatt acagtggcca atactggtag cagaccgatt gtggtaccag
6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctc gcccccatgg
6661 gaactggaaa tgggcgcaga agggtgcaat aatggctgga gcttttatag cagggcttgc
6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcta atgcaataaa
6781 tcaaaaagta gactttgaaa ataacaagca actacagcag gcttctttca accatgataa
6841 agagatgctg caagctcaag tccaggccac caaacagttg caggctgata tgattgcaat
6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt
6961 taatgcacct atgactcagg tcttagactg gaacgggacc aggcattggg cccccggagc
7021 cacgaaaacc actgctctct ccggtggatt caccaatgct tctcatgcca gaactgtcga
7081 cctgaccaag aagacaccag ccacaccagc ccctacgtct gtttctagac ctagctctgt
7141 tgcctctaca gtctccaccc gctcaacctt ggttagcggg tctttcaatt cttcttcttc
7201 agctaggagt tcttctagtg tttcttctca acccacctcc tcctcttctc ggaccagtga
7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacacacagc
7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa
7381 agaggttttg gactcctgga catctgcatt taacacccgc agacaaccgc tattcgctca
7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat gatctttatt ttctttcctt
7501 tgaagattct ttttgtcttt t
//