Typing tool
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Typing tool
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Complete norovirus genomes
| AB044366 | GII.12 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS AB044366 7518 bp RNA linear VRL 18-JUL-2018
DEFINITION Norwalk-like virus genes for RNA polymerase, VP1 protein, VP2
protein, complete cds,
strain:Hu/Norovirus/hiroshima/1999/JP(9912-02F).
ACCESSION AB044366
VERSION AB044366.2
KEYWORDS .
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Hansman,G.S., Doan,L.T., Kguyen,T.A., Okitsu,S., Katayama,K.,
Ogawa,S., Natori,K., Takeda,N., Kato,Y., Nishio,O., Noda,M. and
Ushijima,H.
TITLE Detection of norovirus and sapovirus infection among children with
gastroenteritis in Ho Chi Minh City, Vietnam
JOURNAL Arch. Virol. 149 (9), 1673-1688 (2004)
PUBMED 15593412
REMARK DOI:10.1007/s00705-004-0345-4
REFERENCE 2 (bases 1 to 7518)
AUTHORS Abe,K., Noda,M., Ikeda,Y., Kamimura,M., Fujii,A., Yamaoka,K. and
Ogino,T.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2000) Contact:Katsuhiko Abe Hiroshima city
Institute of public health, Division of Biological Science;
Nishi-ku Shoko-center 4-1-2, Hiroshima city, Hiroshima 733-8650,
Japan
COMMENT On May 19, 2004 this sequence version replaced AB044366.1.
FEATURES Location/Qualifiers
source 1..7518
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/strain="Hu/Norovirus/hiroshima/1999/JP(9912-02F)"
/db_xref="taxon:95340"
CDS 5..5104
/note="N-terminal, helicase, VPg, 3Cpro, RdRp;
orf1"
/codon_start=1
/product="RNA polymerase"
/protein_id="BAA96531.2"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGMLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KREEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM
PELRQALKNISIKSCQIVYGGCTYMLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCIQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPNLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6692
/note="VP1 (capsid) protein;
orf2"
/codon_start=1
/product="VP1 protein"
/protein_id="BAD20208.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFED
GGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6692..7471
/note="VP1 (capsid) protein;
orf3"
/codon_start=1
/product="VP2 protein"
/protein_id="BAD20209.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTTFSGGFTNVSHARTVDLTKKTSATPAPAPVSRPSSVASTVSTRSTL
ISGSSNPSSLARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALRTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggaatgct ttctagtatg gctgtcacat ttaaacgagc
121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acccacccca gaactggtca aaaagatccc tcctcctcca cccaacgggg aggatgaacc
241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctta ccactgtcag
301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaatcaaa gggagaatag
361 ggacgccaag gagccactaa ctggaacaat cctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat
481 cagcctcgcc aaggttgaac taacaccact ctctctgttt tggagaccag tgtatacacc
541 acagtatctc atctctccgg acactctcag gagactgcac ggagagtcgt ttccctacac
601 agcctttgat aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccctacc aagactggaa
721 taggaaaccc cttcccacca tggatgactc caagttgaag aaggtagcta acatattctt
781 gtgcgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc
841 tctcaacatc cttaacatct tggcttcatg tgattggact tttgcaggca tagtggaatc
901 tttgattctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact
1021 cgttccaata gtgatggggg ggattggttt ggtgctaggg ttcaccaaag agaagatcgg
1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagagagagg aagcaaatga
1201 gctggctatg gtgaggtcca tcgaggatgc ggtgttggac ctcgaggcaa ttgaaaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcctggca acctatatga gaactcttga
1321 cctcgaggag gagaaagcca gaaagctttc gaccaagtct gcttcacctg atatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgc tccctggtgc atcgggcgaa
1441 agaggagctc tccagcagac caagacctgt tgttgtgatg atatcaggta agccagggat
1501 agggaaaacc caccttgcca gggaattggc caagaaaatc gcagcttctc tcacagggga
1561 ccagcgtgtg ggtcttatcc cgcgcaatgg tgttgatcac tgggacgcat ataagggaga
1621 aagagtcgtt ctatgggacg actatggaat gagtaacccc atccacgacg ccctcaggtt
1681 acaagaactt gctgacacct gccccctcac gctaaattgt gataggattg agaataaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccact
1801 ggactatgtc aattttgaag catgctcgag gcgtatcgac ttcctcgtgt atgcagatgc
1861 ccctgaagtc gagaaggcga aacgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcactactg gttccctcat
2041 cgctcgagca tcagggctac tccatgagag gttagatgag tacgagttac agggcccaac
2101 ccccactacc ttcaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgctga
2161 aaacaagtac gggttgatgg acacaatgag agtcggaaaa cagctcaagg atgtcaggac
2221 catgccagag ctcagacaag cactcaagaa catctcaatc aagagttgcc agatagtgta
2281 tggtggctgc acctatatgc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt
2341 tcagaacgcc actgtgcaga ccaacaatga actggccggc gccctacacc atcttaggtg
2401 tgccaggatt agatattatg tcaagtgcat tcaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtca ccacgcgcat tgtcaagcgc atgaacatac aagacctttg
2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtttcatc cgacgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gcctcagtga
2701 tgaggagtac gatgagtaca aaagaatcag agaagaaaga aacggcaagt actctataga
2761 ggaatacctt caggacagag ataagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttta ggccaacaag
2881 gaagcaacgc aaagaggaga gggcctctct cggcttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atttggtcga ggatagtcaa
3061 ctttggttca ggttggggtt tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aagcaaattc agatacacaa
3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgatg tgacaggcat
3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ttactcatca agagaccaac
3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agatacaagg
3361 gcgcactgtt gggggtcaaa tgggcatgct cctaacagga tctaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg tccctacatt tacaagagag ggaatgacta
3481 catagtcatt ggagtccaca cggctgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagc gagggggaag ccacacttga aggcggtgac aacaagggaa cctactgcgg
3601 tgcaccaatc ttaggtccag ggagtgcccc aaagctcagc accaagacta agttttggag
3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctatcttg gcggcaagga
3721 ccccagagtc aagggtggcc cctcattgca acaagttatg agggaccagc tgaaaccatt
3781 cactgagccc aggggcaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtt cttgaacaaa caattgaccc acctcaaaaa tggtcattcg cgcaggcatg
3901 cgcatccctc gacaagacca cttccagcgg ccacccgcac cacatgcgga agaacgactg
3961 ctggaacggg gagtccttca caggcaaatt ggcagaccag gcttccaagg ctaacctgat
4021 gttcgaagag ggaaagaaca tgaccccagt ctacacaggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc
4141 aaccatgatc cggtgtgctc gagcgtttgg aggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cccgtcagag taggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gaggcactcc agatataagt atcattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgaa
4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggacg taggtgactt
4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ccctctgtgc gctttctgag gttacaaacc tgtcccctga
4561 cattatccag gctaattccc tcttttcctt ctacggtgat gatgaaattg tgagcacaga
4621 cataaaattg gacccagaga agttgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgccctgac aagactgagg gaccccttgt tatctctgag gacctggatg gcctaacctt
4741 cctgcggagg actgtgaccc gcgacccagc tggctggttt ggaaagctgg aacagagctc
4801 aatacttagg caaatgtatt ggactagggg ccctaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tttcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga
5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggccaaaaca
5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatgga gagttcacgg
5281 tttcaccccg caactcgccc ggggaagtcc tattaaattt ggaattaggc cccgaactaa
5341 atccatacct agcacacctc tctagaatgt ataatggtta tgcgggtggg gttgaggtgc
5401 aagtactact ggctgggaat gcgttcacag ctggaaaact ggtgtttgcc gcagttcccc
5461 ctcattttcc attagaaaat ataagccctg gccagataac tatgttccct catgtaatta
5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc tgatgttagg aataatttct
5581 ttcattataa tcagcagaat gaaccgagga tgagacttgt agcaatgctt tatactcctc
5641 ttagatctaa tggttctggt gatgatgtat tcactgtctc ctgcagggtg cttacccgac
5701 cttcccctga ttttgatttt aattatttgg tcccccctac tgttgaatct aaaaccaaac
5761 ccttcacact ccctatcttg actatagggg agttaaccaa ctccaggttc cctgtaccta
5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aacgggagat
5881 gcgcactaga tggggagctg cagggcacga ctcagctcct ccccacggcg atctgctcgt
5941 tcaggggccg gatcaatcag aaggtgagtg gggaaaacca tgtttggaat atgcaggtca
6001 ccaacatcaa cgggacccct tttgatccaa cagaggatgt cccggctcct ctaggcactc
6061 cagatttctc tggcaagctc tttggtgtac taagccagag agaccatgat aatgcctgca
6121 ggagtcatga tgcagtaatt gcaaccaact ctgccaaatt taccccaaaa ttgggcgcta
6181 tacaaattgg cacatgggaa gaagacgatg tgcacatcaa ccaacctact aagtttactc
6241 cagttggctt gtttgaagat ggaggtttca accagtggac actccccaat tattctggag
6301 ccttaacact taatatggga ttggcccctc ctgtggcccc caccttccct ggtgaacaaa
6361 ttcttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt
6421 gtctcttgcc tcaagaatgg atccaacatc tttaccaaga gtcggccccc tcacaatcag
6481 atgtagcact gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat
6541 tacacaggag tggttacatc acagtggcca atactggtag cagaccgatt gtggtaccag
6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctt gcccccatgg
6661 gaactggaaa tgggcgcaga agggtgcagt aatggctgga gcttttatag cggggcttgc
6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcta atgcaataaa
6781 tcaaaaagta gactttgaaa acaacaagca actacagcag gcttctttca accatgataa
6841 agagatgctg caagctcaag tccaggccac caaacagctg caggctgata tgattgcaat
6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt
6961 taatgcacct atgactcagg ttttagactg gaatgggacc agatattggg cccccggagc
7021 cacgaaaacc actactttct ccggtggatt caccaatgtt tctcatgcca gaactgtcga
7081 cctgaccaag aagacatcag ccacaccagc tcctgcgcct gtttccagac ctagctctgt
7141 cgcctctaca gtctccaccc gctcaacctt gattagcggg tcttccaatc cttcttcttt
7201 agctaggagt tcttctagtg tttcttctca acccacctcc tcctcttctc ggaccagtga
7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacgcacagc
7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa
7381 agaggttttg gactcctgga catctgcatt taacacccac agacaaccgc tattcgctca
7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat aatctttatt ttctttcctt
7501 tgaagatttt tgtctttt
//