Typing tool
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Typing tool
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Complete norovirus genomes
| AB039782 | GII.3 | |
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| GII.P3 |
ORF1: 5..5113
ORF2: 5094..6740
ORF3: 6740..7504
LOCUS AB039782 7541 bp RNA linear VRL 05-SEP-2002
DEFINITION Norwalk-like virus genomic RNA, complete genome, isolate:Saitama
U201.
ACCESSION AB039782
VERSION AB039782.1
KEYWORDS polyprotein; hypothetical protein; capsid; N-terminal, helicase,
VPg, 3Cpro, RdRp.
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T.,
Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y.,
Gojobori,T. and Takeda,N.
TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like
viruses
JOURNAL Virology 299 (2), 225-239 (2002)
PUBMED 12202225
REFERENCE 2 (bases 1 to 7541)
AUTHORS Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2000) Kazuhiko Katayama, National Institute of
Infectious Diseases, Department of Virology II; 4-7-1 Gakuen,
Musashi-murayama, Tokyo 208-0011, Japan (E-mail:katayama@nih.go.jp,
Tel:81-42-561-0771, Fax:81-42-561-4729)
FEATURES Location/Qualifiers
source 1..7541
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/isolate="Saitama U201"
/db_xref="taxon:95340"
CDS 5..5113
/note="N-terminal, helicase, VPg, 3Cpro, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="BAC11836.1"
/translation="MKMASNDASVAVAGKNNNNDKEKSSGDSLFSNMTVSFKKALGAR
PKQPPPGEIKQTQKPPRPPTPELVKRIPPPPPNGEDEPKVVYRVGEGVSGLPDLTTVA
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHILGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPDTLKGLSGESFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAILCALSSLFTRPIKDI
IGKLKPMNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLKACKDLGAYGLEILKLVMKW
FFPKKEEANELALVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKIASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTLGSLI
ARASGLLHERMDEFELQGPNLPTFNFDRNKIAAFRQLAAENKYGMVDTLRVGNQLKSV
KTMDELKQAIKNITIKKCQIVYNGCTYAMESDGRGKVSVDKVQSATVQTNNELSGALH
HLRSARIRYYVKCFQEAVYSLLQIAGAAFVTSRIVRRMNISSLWSKPPVEEDDESEDK
EGCPKPRDEDDLTIDSKDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRIFRPTKKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPMNQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVASILIKRTTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYVYKRGNDFVVIGVHTAAARAGNTVICATQGSEGEATLEGGDDKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPSVLESAKKTIINVLEQVIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWNGESFTGKLADQASKANLMYEEGKHMPPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPVRVGMNMNEDGPIMFEKHSRYRYHYDADYS
RWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5094..6740
/codon_start=1
/product="capsid"
/protein_id="BAC11837.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTPTPRLFNHRWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEITTESDDFDTNQS
TKFTPVGIGVDNEAEFQQWSLPNYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6740..7504
/codon_start=1
/product="hypothetical protein"
/protein_id="BAC11838.1"
/translation="MAGAFIAGLAGDMFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLSAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWSG
TRYWAPNAASTTSMSGGFTSQVVHRTTPDFKTSQAPKFTPSSGSSVRSSSTQLTNLSS
HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgttgccgtt gctggcaaaa acaacaacaa
61 cgacaaggaa aaatcttcag gtgacagctt gttttctaac atgactgtct cctttaagaa
121 agccctcggg gcgcggccta aacaaccgcc cccgggagaa ataaaacaaa cacaaaaacc
181 accaagacca ccaacaccgg aattggtgaa aagaataccc ccaccaccac ccaacggcga
241 ggatgaacca aaggtggtat atagggtggg agaaggtgtg tccgggctgc ccgacttaac
301 aaccgtggcg cagcctgacg cacaaaacac agcttatagt gtacccccac ttagccaaag
361 agaggtcggc gaagctaaag aaccgctacc tggatccatt ctggaaatgt gggatggtga
421 gatctaccac tatgggctgt acgttgagcg agggcacata cttggggtgc ataaaccacc
481 tgctgcaata agtctcgcca aaattgaact gacaccactg tctctctact ggagagtggt
541 ttacactccc cagtacttga tagccccaga cactctgaag ggcttgagtg gagaatcatt
601 cccatacaca gcctttgaca acaactgtta cgccttctgt tgttgggtct tagatctcaa
661 tgactcttgg cttagcagga gaatgattca aaggacaacc ggcttcttca ggccgtacca
721 agattggaac agaaaacccc tgccaaccat ggatgagcca aaaattaaga aggccgcgaa
781 tgctattctg tgtgctctct catcactctt cactagaccc attaaggaca ttattggaaa
841 gctcaaacca atgaacatcc tcaatatatt ggcaacttgt gactggactt ttgcaggcat
901 agtggagtct cttattcttc ttgctgaact ttttggggtg ttctggacac ccccagacgt
961 gtctgcgatg attgccccct tactcggtga ctacgagatg cagggcccag aagacctggc
1021 cgtggaactt gtacccgtgg taatgggagg gataggtttg gtgttgggat tcaccaagga
1081 gaagatcggc aagatgcttt catcagctgc atccacgctt aaggcctgca aagatctagg
1141 agcctatgga ttggagatac tcaaattggt catgaagtgg ttcttcccta agaaggaaga
1201 ggctaacgag ttagccttgg taagggccat cgaggatgca gtcctggatt tagaggcaat
1261 agaaaacaac cacatgacca ctctcctcaa ggacaaagac agtctggcta catacatgag
1321 gactcttgac ctggaggaag agaaagcaag aaaactgtcc accaaatccg catcacctga
1381 cattgtgggc acaataaatg cattattggc aaggattgca gccgctaggt cactagtcca
1441 caaggctaag gaggagctct caagcagaca gaggcctgtc gtcgtgatga tatctggcag
1501 accaggcata gggaagaccc atctcgccag agagctagcc aagaaaattg catcaaccct
1561 gtcgggcgac caaaggattg gactggtgcc cagaaacggt gtagaccact gggacgccta
1621 caagggggag agagtggtac tatgggatga ctatggcatg agcaacccca tacaggatgc
1681 actgaggctt caagagttgg ctgatacctg tcccctaact ctaaactgtg acagaattga
1741 aaacaaggga aaagtgtttg acagtgatgc cataatcata acaaccaacc ttgcaaatcc
1801 agcaccgctg gactatgtca actttgaggc ttgctccaga cgcatagact ttttagtgta
1861 tgcagatgca cctgacattg agaaagccaa gcgtgacttc cccggtcaac cagatatgtg
1921 gaaagatcac tacagaccag actttacaca catcaaactt cagctagcac cacagggagg
1981 ttttgacaag aatggcaaca ccccacatgg taaaggtgta gtgaagtctc tgacgcttgg
2041 gtcattgatc gccagggctt ccggtttgct tcacgagaga atggatgagt tcgagctcca
2101 aggccctaat ctaccaacct tcaattttga ccgcaacaag atcgccgcct tcaggcaatt
2161 ggcagctgaa aacaaatatg gtatggtgga cacactgagg gtcggtaatc aactgaagag
2221 tgtcaagacc atggatgagc tcaaacaggc tataaagaat atcaccatca agaagtgcca
2281 aatagtgtac aacgggtgta cctacgcaat ggagtctgat gggagaggca aggtctcagt
2341 tgacaaggtg caaagcgcaa cagtccaaac taacaatgag ctttcaggag cgttgcacca
2401 cttaagatct gcaagaataa ggtattatgt taaatgcttc caggaagctg tctattcttt
2461 attacaaatt gctggtgcgg cttttgtcac ctcacgcatt gtgaggcgca tgaacatctc
2521 gagcctctgg tcgaaaccgc ctgttgaaga ggatgatgaa tctgaagaca aagaagggtg
2581 ccccaagccc cgagatgaag atgacctcac tatcgattcc aaggacatca aagtggaagg
2641 aaagaaaggc aagaacaagt ccggccgggg taagaaacac acagctttct catctaaggg
2701 cctcagtgat gaagagtacg atgagtacaa gagaatcagg gaagaaagga atggaaaata
2761 ttcaatagag gagtacctcc aagacaggga cagatactat gaagagctag ccattgccaa
2821 ggccactgaa gagaacttct gtgaggagga agagatcaag atccgtcaga gaattttccg
2881 ccccaccaaa aagcagcgga aagaggaaag agccacactt gggctcgtca cagggtcgga
2941 gatcagaaag aggaacccag atgacttcaa gccaaaaggg aaactgtggg ctgatgataa
3001 caggagtgtg gactacaatg agaggataga ttttgaagcg ccccctagcg tttggtcaag
3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacctc
3121 gacacacgtg ataccaaaag gaatcacgga ggcgtttggg gtgcccatga accaaatcca
3181 aattcacaaa tcaggggaat tctgccgctt acggttccca aaaccaatca ggccagacgt
3241 gagtgggatg attttggaag agggtgctcc tgaaggaact gttgcatcca tcctcatcaa
3301 aagaacaaca ggggagttga tgccccttgc agccagaatg ggaacccacg ccacaatgaa
3361 aatccaggga agaacggtgg gtggtcagat gggcatgtta ctcacaggtt caaatgccaa
3421 aagcatggac ctaggcacaa caccaggtga ctgtgggtgc ccctacgtgt acaagagggg
3481 caatgacttt gtggtcattg gcgtgcacac tgcagcagca cgtgcaggaa acacagtcat
3541 atgtgccacg caaggaagcg aaggtgaagc cactcttgag ggaggtgacg acaagggcac
3601 ctattgtgga gcccccattt taggacctgg taatgcacca aagttgagca caaaaacaaa
3661 attctggaga tcttccaacg caccgctccc gccaggcacc tatgaaccag catacctagg
3721 tgggaaagat ccacgtgtga agggcggtcc gtctctgcaa caggtcatga gagaccaact
3781 taaacctttc acagagccca gagggaaacc accaaacccg agtgtcctag aatcagcaaa
3841 gaagaccatc atcaatgttc tagagcaggt tattgacccc ccccagaagt ggtcctatgc
3901 ccaagcttgt gcatcccttg acaaaacaac ttccagtgga tacccgcatc acgttcggaa
3961 gaatgattac tggaatggtg agtccttcac aggaaaactt gcagaccagg cttcaaaagc
4021 aaatctcatg tacgaagaag gcaaacacat gccaccggtt tacaccgcag cgctcaagga
4081 tgagctggtg aaaactgaca aaatctatgg caaaattaag aaaaggctcc tgtggggttc
4141 tgacctctct accatgattc ggtgcgccag agcatttggt ggcctcatgg atgagctcaa
4201 agcaaattgt atcacacttc ctgtcagagt tggcatgaac atgaatgaag atggtcccat
4261 aatgtttgag aaacattcca gatacagata ccactatgat gcagactact ctcgctggga
4321 ctccacgcag cagcgggcag tgttggcagc agcacttgaa atcatggtga ggttctctgc
4381 tgaaccacag ctagcacaaa tagtagctga agacctgcta gcaccaagtg tggttgatgt
4441 gggtgacttc aagatcacca ttaatgaagg cctaccttct ggtgtgcctt gcacctcaca
4501 gtggaactcc attgcccact ggttgcttac tttgtgtgcc ctttctgaag tgacaggact
4561 aggccccgac atcatacaag ctaattccat gtactctttc tatggtgatg atgagattgt
4621 aagcactgac ataaaattgg acccagagaa actgactgca aaacttaaag agtacggcct
4681 caaacccacc cggcccgaca agaccgaggg gccgctggtg atcagtgaag acctgaatgg
4741 gttaacgttc ctccgccgaa cagtcacccg tgacccagca ggttggtttg gaaagctgga
4801 gcaaagttcc atcctcaggc agctatactg gacaagggga cctaaccatg aagaccccag
4861 tgaaaccatg ataccacatg cgcagagacc cgtgcagctc atggcactac tgggagaatc
4921 ctccctgcat ggaccctcat tctacagcaa ggtcagcaag ctggttatat ctgaacttaa
4981 ggagggagga atggattttt atgtgcccag acaagagtca atgtttaggt ggatgaggtt
5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5101 tggcgtcgaa tgacgctgct ccatctaatg atggtgccgc cggcctcgtc ccagagatca
5161 acaatgaggc aatggcgcta gagccagtgg cgggcgcagc gatagcagcg cccctcactg
5221 gccagcaaaa tataattgat ccctggatta tgaataattt tgtgcaagca cctggtggtg
5281 agtttacagt gtcacctagg aattcccctg gtgaagtgct tcttaatttg gaattaggtc
5341 cagaaataaa cccctatttg gctcatcttg ctagaatgta caatggttat gcaggtggat
5401 ttgaagtgca agtggtccta gctggaaatg cgtttacagc aggaaaggtt atctttgcag
5461 ctataccccc taatttccct attgacaatc tgagcgcggc acagatcaca atgtgcccgc
5521 acgtgattgt ggatgtcagg cagttggaac caatcaatct cccgatgcct gatgtccgca
5581 acaatttctt tcattataat caaggttctg attcaagatt acgtttgatt gcaatgttgt
5641 atacacctct tagggcaaat aattctggag atgatgtttt cactgtgtct tgtagggtgt
5701 taactaggcc cagccctgat ttctcgttca attttcttgt cccacccact gtggaatcaa
5761 agacaaagct ttttaccctc cccattttaa ccatctctga aatgtccaat tccaggtttc
5821 cagttccaat tgactcttta cacaccagcc caactgagaa tatagttgtc cagtgccaaa
5881 atgggcgcgt cactcttgac ggtgagttaa tgggcaccac ccaactctta ccgagccaaa
5941 tatgtgcttt caggggcaca ctcactagat caacaagcag ggccagcgac caagccgaca
6001 caccaacccc taggctattc aaccatcgtt ggcacataca attggacaat ctaaatggaa
6061 ctccctacga ccctgcagag gacataccag ctcctttggg cacaccagac ttccggggca
6121 aggtctttgg cgtggccagc cagagaaacc ccgacagcac aacaagggca catgaagcaa
6181 aagtggacac aacatctggc cgcttcaccc caaaattggg ctccttagaa ataaccactg
6241 agtctgatga ctttgacaca aaccagtcaa caaaattcac cccagttggc atcggggttg
6301 acaatgaggc agaatttcag caatggtcct tacccaacta ttctggtcag tttactcata
6361 atatgaactt agccccagct gtcgccccca attttcctgg tgaacagcta cttttcttcc
6421 gatcacagct gccatcctct ggtgggcggt ctaacggggt cctagactgc ttggtccccc
6481 aggaatgggt tcaacacttt taccaagaat cagcccccgc ccaaacgcag gtggccctgg
6541 ttaggtatgt caaccctgac actggcagag tgctatttga ggctaagcta cacaaattgg
6601 gttttatgac tatagcaaag aatggtgact ccccaattac tgtccctcca aatggatact
6661 ttagatttga atcttgggtt aacccctttt acacacttgc ccccatggga actggaaacg
6721 ggcgtagaag gattcaataa tggctggagc ttttatagca ggattggctg gtgacatgtt
6781 cacaaatact gtggggtctt tggttaatgc aggggccaat gctattaatc aaaaagttga
6841 ttttgaaaat aataaatatt tgcaaaatgc ttcttttaat catgataagg agatgttaag
6901 tgcacaaatt gaggcaacaa agaggctgca ggctgacatg attgcaatca aacaaggggt
6961 cttgaccgct ggcggctttt cccccactga tgcagcacgt ggggcaatta atgctccaat
7021 gacaaaagtt ttagattgga gtggaacaag gtactgggca ccaaacgccg cctccacaac
7081 ttcaatgtca ggtggcttca caagccaagt tgtgcacaga accacaccag attttaaaac
7141 gagccaggcc cccaaattca cacccagcag tgggtcttca gtgagatcaa gctcaaccca
7201 actcaccaac ttgagctcac actcatccgg gtcgtcccga tccagcgggt ctacggttgt
7261 cagctcgctg ccgtcctcca gtaggactag ggactgggtc aaccaacaaa atctcaattt
7321 ggaaccacac atgcctggat ctctcaggac agcttttgtc actccaccat ctagcacagc
7381 ctctagttca ggcacagtct caaccgtgcc caaaaatgtt ttggactcct ggacatctgc
7441 gtttaacacg cgcagacagc cgctgtttgc acaccttcgt agaagggggg agtcaaatgt
7501 ttagtgaaaa gattattcct aaatttgatt tagaatcttt t
//