Typing tool
|
Complete norovirus genomes
AB039781 | GII.3 | ||
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GII.P3 |
ORF1: 5..5113 ORF2: 5094..6740 ORF3: 6740..7504LOCUS AB039781 7541 bp RNA linear VRL 05-SEP-2002 DEFINITION Norwalk-like virus genomic RNA, complete genome, isolate:Saitama U18. ACCESSION AB039781 VERSION AB039781.1 KEYWORDS polyprotein; hypothetical protein; capsid; N-terminal, helicase, VPg, 3Cpro, RdRp. SOURCE Norwalk-like virus ORGANISM Norwalk-like virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T., Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y., Gojobori,T. and Takeda,N. TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like viruses JOURNAL Virology 299 (2), 225-239 (2002) PUBMED 12202225 REFERENCE 2 (bases 1 to 7541) AUTHORS Katayama,K. TITLE Direct Submission JOURNAL Submitted (02-MAR-2000) Kazuhiko Katayama, National Institute of Infectious Diseases, Department of Virology II; 4-7-1 Gakuen, Musashi-murayama, Tokyo 208-0011, Japan (E-mail:katayama@nih.go.jp, Tel:81-42-561-0771, Fax:81-42-561-4729) FEATURES Location/Qualifiers source 1..7541 /organism="Norwalk-like virus" /mol_type="genomic RNA" /isolate="Saitama U18" /db_xref="taxon:95340" CDS 5..5113 /note="N-terminal, helicase, VPg, 3Cpro, RdRp" /codon_start=1 /product="polyprotein" /protein_id="BAC11833.1" /translation="MKMASNDASVAVAGKNNNNDKEKSSGDSLFSNMTVSFKKALGAR PKQPPPGEIKQTQKPPRPPTPELVKRIPPPPPNGEDEPKVVYRVGEGVSGLPDLTTVA QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHILGVHKPPA AISLAKIELTPLSLYWRVVYTPQYLIAPDTLKGLSGESFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAILCAISSLFTRPIKDI IGKLKPMNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLKACKDLGAYGLEILKLVMKW FFPKKEEANELALVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA RELAKKIASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTLGSLI ARASGLLHERMDEFELQGPNLPTFNFDRNKIAAFRQLAAENKYGMVDTLRVGNQLKSV KTMDELKQAIKNITIKKCQIVYNGCTYTMESDGRGKVSVDKVQSATVQTNNELSGALH HLRSARIRYYVKCFQEAVYSLLQIAGAAFVTSRIVRRMNISSLWSKPPVEENDESEDK EGCPKPRDEDDLTIDSKDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRIFRPTKKQRKEERTTL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITEAFGVPMSQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVASILIKRTTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT PGDCGCPYVYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF TEPRGKPPNPSVLESAKKTIINVLEQVIDPPQKWSYAQACASLDKTTSSGYPHHVRKN DYWNGESFTGKLADQASKANLMYEEGKHMPPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDELKANCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5094..6740 /codon_start=1 /product="capsid" /protein_id="BAC11834.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGAT QLLPSQICAFRGTLTRSTSRASDQTDTPTPRLFNHRWHIQLDNLNGTPYDPAEDIPAP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEITTESDDLDTNQS TKFTPVGIGVDNEAEFQQWSLPNYSGQFTHNMNLAPAVALNFPGEQLLFFRSQLPSSG GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ" CDS 6740..7504 /codon_start=1 /product="hypothetical protein" /protein_id="BAC11835.1" /translation="MAGAFIAGLAGDMFTNTVGSLVNAGADAINQKVDFENNKYLQNA SFNHDKEMLSAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDRSE TRYWAPNAAFTTSMSGGFTSQVVHRTTPDLKTSQAPKFTPSSGSSVRSSSTQLTNLSS HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHMPGSLRTAFVTPPSSTASSSG TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgttgccgtt gctggcaaaa acaacaacaa 61 cgacaaggaa aaatcttcag gtgacagctt gttttctaac atgactgtct cctttaagaa 121 agccctcggg gcgcggccta aacaaccgcc cccgggagaa ataaaacaaa cacaaaaacc 181 accaagacca ccaacaccgg aattggtgaa aagaataccc ccaccaccac ccaacggcga 241 ggatgaacca aaggtggtat atagggtggg agaaggtgtg tccgggctgc ccgacttaac 301 aaccgtggcg caacctgacg cacaaaacac agcttatagt gtacccccac ttagccaaag 361 agaggtcggc gaagctaaag aaccgctacc tggatccatt ctggaaatgt gggatggtga 421 gatctaccac tatgggctgt acgttgagcg agggcacata cttggggtgc ataaaccacc 481 tgctgcaata agtctcgcca aaattgaact gacaccactg tctctctact ggagagtggt 541 ttacactccc cagtacttga tagccccgga cactctgaag ggcttgagtg gagaatcatt 601 cccatacaca gcctttgaca acaactgtta cgccttctgt tgttgggtct tagatctcaa 661 tgactcttgg cttagcagga gaatgattca aaggacaacc ggcttcttca ggccgtacca 721 agattggaac agaaaacccc tgccaaccat ggatgagcca aaaattaaga aggccgcgaa 781 tgctattctg tgtgctatct catcactctt cactagaccc attaaggaca ttattggaaa 841 gctcaaacca atgaacatcc tcaatatatt ggcaacttgt gactggactt ttgcaggcat 901 agtggagtct cttattcttc ttgctgaact ttttggggtg ttctggacac ccccagacgt 961 gtctgcgatg attgccccct tactcggtga ctacgagatg cagggcccag aagacctggc 1021 cgtggaactt gtacccgtgg taatgggagg gataggtttg gtgttgggat tcaccaagga 1081 gaagatcggc aagatgcttt catcagctgc atccacgctt aaggcctgca aagatctagg 1141 agcctatgga ttggagatac tcaaattggt catgaagtgg ttcttcccta agaaggaaga 1201 ggctaacgag ttagccttgg taagggccat cgaggatgca gtcctggatt tagaggcaat 1261 agaaaacaac cacatgacca ctctcctcaa ggacaaagac agtctggcta catacatgag 1321 gactcttgac ctggaggaag agaaagcaag aaaactgtcc accaaatccg catcacccga 1381 cattgtgggc acaataaatg cattattggc aaggattgca gccgctaggt cactagtcca 1441 caaggctaag gaggagctct caagtagaca gaggcctgtc gtcgtgatga tatctggcag 1501 accaggcata gggaagaccc atctcgccag agagctagcc aagaagattg catcaaccct 1561 gtcgggcgac caaaggattg gactggtgcc cagaaacggt gtagaccact gggacgccta 1621 caagggggag agagtggtac tatgggatga ctatggcatg agcaacccca tacaggatgc 1681 actgaggctt caagagttgg ctgatacctg tcccctaact ctaaactgtg acagaattga 1741 aaacaaggga aaagtgtttg acagtgatgc cataatcata acaaccaacc ttgcaaatcc 1801 agcaccgctg gactatgtca actttgaggc ttgctccaga cgcatagact ttttagtgta 1861 tgcagatgca cctgacattg agaaagccaa gcgtgacttc cccggtcaac cagatatgtg 1921 gaaagatcac tacagaccag actttacaca catcaaactt cagctagcac cacagggagg 1981 ttttgacaag aatggcaaca ccccacatgg taaaggtgta gtgaagtctc tgacgcttgg 2041 gtcattgatc gccagggctt ccggtttgct tcacgagaga atggatgagt tcgagctcca 2101 aggccctaat ctaccaacct tcaattttga ccgcaacaag atcgctgcct tcaggcaatt 2161 ggcagctgaa aacaaatatg gtatggtgga cacactgagg gtcggtaatc aactgaagag 2221 tgtcaagacc atggatgagc tcaaacaggc tataaagaat atcaccatca agaagtgcca 2281 aatagtgtac aacgggtgta cctacacaat ggagtctgat gggagaggca aggtctcagt 2341 tgacaaggtg caaagcgcaa cagtccaaac taacaatgag ctttcaggag cgttgcacca 2401 cttaagatct gcaagaataa ggtattatgt taaatgcttc caggaagctg tctattcttt 2461 attacaaatt gctggtgcgg cttttgtcac ctcacgcatt gtgaggcgca tgaacatctc 2521 gagcctctgg tcgaaaccgc ctgttgaaga gaatgatgaa tctgaagaca aagaagggtg 2581 ccccaagccc cgagatgaag atgacctcac tatcgattcc aaggacatca aagtggaagg 2641 aaagaaaggc aagaacaagt ccggccgggg taagaaacac acagctttct catctaaggg 2701 cctcagtgat gaagagtacg atgagtacaa gagaatcagg gaagaaagga atggaaaata 2761 ttcaatagag gagtacctcc aagacaggga cagatactat gaagagctag ccattgccaa 2821 ggccactgaa gagaacttct gtgaggagga agagatcaaa atccgtcaga gaattttccg 2881 ccccaccaaa aagcagcgga aagaggaaag aaccacactt gggctcgtca cagggtcgga 2941 gatcagaaag aggaacccag atgacttcaa gccaaaaggg aaactgtggg ctgatgataa 3001 caggagtgtg gactacaatg agaggataga ttttgaagcg ccccctagcg tttggtcaag 3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacctc 3121 gacacacgtg ataccaaaag gaatcacgga ggcgtttggg gtgcccatga gccaaatcca 3181 aattcacaaa tcaggggaat tctgccgctt acggttccca aaaccaatca ggccagacgt 3241 gagtgggatg attttggaag agggtgctcc tgaaggaact gttgcatcca tcctcatcaa 3301 aagaacaaca ggggagttga tgccccttgc agccagaatg ggaacccacg ccacaatgaa 3361 aatccaggga agaacggtgg gtggtcagat gggcatgtta ctcacaggtt caaatgccaa 3421 aagcatggac ctaggcacaa caccaggtga ctgtgggtgc ccctacgtgt acaagagggg 3481 caatgacttt gtggtcattg gcgtgcacac tgcagcagca cgtggaggaa acacagtcat 3541 atgtgccacg caaggaagcg aaggtgaagc cactcttgag ggaggtgacg acaagggcac 3601 ctattgtgga gcccccattt taggacctgg taatgcacca aagttgagca caaaaacaaa 3661 attctggaga tcttccaacg caccgctccc gccaggcacc tatgaaccag catacctagg 3721 tgggaaagat ccacgtgtga agggcggtcc gtctctgcaa caggtcatga gagaccaact 3781 taaacctttc acagagccca gagggaaacc accaaacccg agtgtcctag aatcagcaaa 3841 gaagaccatc atcaatgttc tagagcaggt tattgacccc ccccagaagt ggtcctatgc 3901 ccaagcttgt gcatcccttg acaaaacaac ttccagtgga tacccgcatc acgttcggaa 3961 gaatgattac tggaatggtg agtccttcac aggaaaactt gcagaccagg cttcaaaagc 4021 aaatctcatg tacgaagaag gcaaacacat gccaccggtt tacaccgcag cgctcaagga 4081 tgagctggtg aaaactgaca aaatctatgg caaaattaag aaaaggctcc tgtggggttc 4141 tgacctctct accatgattc ggtgcgccag agcatttggt ggcctcatgg atgagctcaa 4201 agcaaattgt atcacacttc ctgtcagagt tggcatgaac atgaatgaag atggtcccat 4261 aatatttgag aaacattcca gatacagata ccactatgat gcagactact ctcgctggga 4321 ctccacgcag cagcgggcag tgttggcagc agcacttgaa atcatggtga ggttctctgc 4381 tgaaccacag ctagcacaaa tagtagctga agacctgcta gcaccaagtg tggttgatgt 4441 gggtgacttc aagatcacca ttaatgaggg cctaccttct ggtgtgcctt gcacctcaca 4501 gtggaactcc attgcccact ggttgcttac tttgtgtgcc ctttctgaag tgacaggact 4561 aggccccgac atcatacaag ctaattccat gtactctttc tatggtgatg atgagattgt 4621 aagcactgac ataaaattgg acccagagaa actgactgca aaacttaaag agtacggcct 4681 caaacccacc cggcccgaca agaccgaggg gccgctggtg atcagtgaag acctgaatgg 4741 tttaacgttc ctccgccgaa cagtcacccg tgacccagca ggttggtttg gaaagctgga 4801 gcaaagttcc atcctcaggc agctatactg gacaagggga cctaaccatg aagaccccag 4861 tgaaaccatg ataccacatg cgcagagacc cgtgcagctc atggcactac tgggagaatc 4921 ctccctgcat ggaccctcat tctacagcaa ggtcagcaag ctggttatat ctgaacttaa 4981 ggagggagga atggattttt atgtgcccag acaagagtca atgtttaggt ggatgaggtt 5041 ctcagatctg agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5101 tggcgtcgaa tgacgctgct ccatctaatg atggtgccgc cggcctcgtc ccagagatca 5161 acaatgaggc aatggcgcta gagccagtgg cgggcgcagc gatagcagcg cccctcactg 5221 gccagcaaaa tataattgat ccctggatta tgaataattt tgtgcaagca cctggtggtg 5281 agtttacagt gtcacctagg aattcccctg gtgaagtgct tcttaatttg gaattaggtc 5341 cagaaataaa cccctatttg gctcatcttg ctagaatgta caatggttat gcaggtggat 5401 ttgaagtgca agtggtccta gctggaaatg cgtttacggc aggaaaggtt atctttgcag 5461 ctataccccc taatttccct attgacaatc tgagcgcggc acagatcaca atgtgcccgc 5521 acgtgattgt ggatgtcagg cagttggaac caatcaatct cccgatgcct gatgtccgca 5581 acaatttctt tcattataat caaggttctg attcaagatt acgtttgatt gcaatgttgt 5641 atacacctct tagggcaaat aattctggag atgatgtttt cactgtgtct tgtagggtgt 5701 taactaggcc cagccctgat ttctcgttca attttcttgt cccacccact gtggaatcaa 5761 agacaaagct ttttaccctc cccattttaa ccatctctga aatgtccaat tccaggtttc 5821 cagttccaat tgactcttta cacaccagcc caactgagaa tatagttgtc cagtgccaaa 5881 atgggcgcgt cactcttgac ggtgagttaa tgggcgccac ccaactctta ccgagccaaa 5941 tatgtgcttt caggggcaca ctcactagat caacaagcag ggccagcgac caaaccgaca 6001 caccaacccc taggctattc aaccatcgtt ggcacataca attggacaat ctaaatggaa 6061 ctccctacga ccctgcagag gacataccag ctcctttggg cacaccagac ttccggggta 6121 aggtctttgg cgtggccagc cagagaaacc ccgacagcac aacaagggca catgaagcaa 6181 aagtggacac aacatctggc cgcttcaccc caaaattggg ctctttagaa ataaccactg 6241 agtctgatga ccttgacaca aaccagtcaa caaaattcac cccagttggc atcggggttg 6301 acaatgaggc agaatttcag caatggtcct tacccaacta ttctggtcag tttactcata 6361 acatgaactt agccccagct gtcgccctca attttcctgg tgaacagcta cttttcttcc 6421 gatcacagct gccatcctct ggtgggcggt ctaacggggt tctagactgc ttggtccccc 6481 aggaatgggt tcaacacttt taccaagaat cagcccccgc ccaaacgcag gtggccctgg 6541 ttaggtatgt caaccctgac actggcagag tgctatttga ggctaagcta cacaaattgg 6601 gttttatgac tatagcaaag aatggtgact ccccaataac tgtccctcca aatggatact 6661 ttagatttga atcttgggtt aacccctttt atacacttgc ccccatggga actggaaacg 6721 ggcgtagaag gattcaataa tggctggagc ttttatagca ggattggctg gtgacatgtt 6781 cacaaatact gtggggtctt tggttaatgc aggggccgat gctattaatc aaaaagtcga 6841 ttttgaaaat aataaatatt tgcaaaatgc ttcttttaat catgataagg agatgttaag 6901 tgcacaaatt gaggcaacaa agaggctgca ggctgacatg attgcaatca aacaaggggt 6961 cttgaccgct ggcggctttt cccccactga tgcagcacgt ggagcaatta atgctccaat 7021 gacaaaagtt ttggatcgga gtgaaacaag gtactgggca ccaaacgccg ccttcacaac 7081 ttcaatgtca ggtggcttca caagccaagt tgtgcacaga accacaccag atcttaaaac 7141 gagccaggcc cccaaattca cacccagcag tgggtcttca gtgagatcaa gctcaaccca 7201 actcaccaac ttgagctcac actcatccgg gtcgtcccga tccagtgggt ctacggttgt 7261 cagctcgctg ccgtcctcca gtaggactag ggactgggtc aaccaacaaa atctcaattt 7321 ggaaccacac atgcctgggt ctctcaggac agcttttgtc actccaccat ctagcacagc 7381 ctctagttca ggcacagtct caaccgtgcc caaaaatgtt ttggactcct ggacatctgc 7441 gtttaacacg cgcagacagc cgctgtttgc acaccttcgt agaagggggg agtcaaatgt 7501 ttagtgaaaa gattattcct aaatttgatt tagaatcctt t //