Typing tool
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Typing tool
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Complete norovirus genomes
| AB039780 | GII.8 | |
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| GII.P8 |
ORF1: 5..5104
ORF2: 5085..6698
ORF3: 6698..7471
LOCUS AB039780 7524 bp RNA linear VRL 05-SEP-2002
DEFINITION Norwalk-like virus genomic RNA, complete genome, isolate:Saitama
U25.
ACCESSION AB039780
VERSION AB039780.1
KEYWORDS polyprotein; hypothetical protein; capsid; N-terminal, helicase,
VPg, 3Cpro, RdRp.
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T.,
Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y.,
Gojobori,T. and Takeda,N.
TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like
viruses
JOURNAL Virology 299 (2), 225-239 (2002)
PUBMED 12202225
REFERENCE 2 (bases 1 to 7524)
AUTHORS Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2000) Kazuhiko Katayama, National Institute of
Infectious Diseases, Department of Virology II; 4-7-1 Gakuen,
Musashi-murayama, Tokyo 208-0011, Japan (E-mail:katayama@nih.go.jp,
Tel:81-42-561-0771, Fax:81-42-561-4729)
FEATURES Location/Qualifiers
source 1..7524
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/isolate="Saitama U25"
/db_xref="taxon:95340"
CDS 5..5104
/note="N-terminal, helicase, VPg, 3Cpro, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="BAC11830.1"
/translation="MKMASNDATAAAGNFNIANNSENTPPPVKEEASVLSNVKVGFKK
ILGAVPKQPKPPEVKAKDQPRVLVNGKTLEVPPPPPNGEDVIYYNSKDDTVHGLPNLT
TVSCEGENLPYTVPPLSEREHRAAPEPLPGTILEMWDGEFYHYAIYVSGGKAIGVHKP
PAAISLATIELTPISLYWRPVYVPNYLVHPDTLKSLAGEKFPYTAFSNNCYNFCCWVL
DLKDSWLNRRSITRTTGFFKPYQSWNKKPLPTVDDGKIKKVANAVLCALGSLFSKPIK
DLIGKLKPLNFLNLLASCDWTFSGVVETVILAAELFGVFWTPPDVSNFIASLIGDFEL
QGPEDLAVELVPIIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVM
KWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDRDSLLTYMKTLDLEEEKA
RKLSTKSSSPDIVGTINAILARIAAARSLLHRAKEEMYSRPRPVVVMISGRPGVGKTH
MARHLAKSVAGTMSGDQRIGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALALQE
LADTCPVTLNCDRIENKGKMFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYADA
PTIEKAKKDFPGQPDMWKEHFKADFSHLKLTLAPQGGFDKNGNTPHGKGTMKTLTQGS
LTARVAGLVHERKDEFQLQGGELQVYNFDTNKVSAFRKLAADNNYGFLETMRVGSSLK
DVKTVEDLKCALKSVSFKECEIIYRNVKYRISSDGCGKVSIEKLADNNSQTTREIITA
VTRLQQARARYYISCFQDLVYTLLQVAGASFVINRIVKKFNWERWVKAPETDEPTPSN
DKPDTEEEWEIAPKDVDSEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRLREEKQG
RYTIEEYLQDRDRYYEELAVARATEENFCEEEEIKIRQRIFRPTKKQRKEERGVLGLV
TGADIRKRRPDDFQPKGKLWADDSRSVDYNEKIEFEAPPSVWSRIVPLGTGWGFWVSS
NLLITTTHVLPKGIKELFGVDIKQVQVHKSGEFCRFRFPKPVRPDVSGLILEEGAPEG
TVCSVLIKRSTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGD
CGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGEDHGTYCGAPILA
PGKAPKLSTKTKFWRSSPDSLPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEEAKKTVMNVLEQTIEPAKPWTYSQACASLDKTTSSGSPHHVRKNEHW
NGESFTGPLADQASKANLMYEEGKHMNPMYTAALKDELVKTDKIYKKIKKRLLWGSDL
GTMLRCARAFGGLLDSMKESCISLPCRVGMNINEDGPLIFEKHSKYTYHYDADYSRWD
STQQRAVLSAAMEVMVKFSAEPELAQVVAEDLLAPSRLDVGDFVISVQEGLPSGVPCT
SQWNSIAHWILTLSAMSEVSGLSPEVVQANSCFSFYGDDEIVSTDINLDPEKLTRKLR
EYGLVPTRPDKTEGPLVITQDLNGLTFLRRTIVRDPAGWFGKLDRDSILRQLYWTRGP
NHENPFESMIPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQE
AMFRWMRFSDLSTWEGDRNLAPENVNEDGVE"
CDS 5085..6698
/codon_start=1
/product="capsid"
/protein_id="BAC11831.1"
/translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ
LNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD
IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFEFNFLVPP
SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT
TLQPVSICGFRGTLQTRLADQPNYTYQVHLENLDGSPVDPTDEVPAPLGTPDFQAQLF
GVISQRSSDNATRAHEARVNTNDPTFAPQIAQVRFKSPSNDFFDNEPIKFTPVGISVD
SQNSYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL
PQEWVAHFYQEAATAQTDVALIRFVNPDTGRVLFEGKLHKQGFITISNSGDHPIVMPA
NGYFRFEAWVNQFYSLAPVGTGSGRRRIQ"
CDS 6698..7471
/codon_start=1
/product="hypothetical protein"
/protein_id="BAC11832.1"
/translation="MAGAFLAGLAGDVVTSGIGSLINAGANAVNQKVEYDFNRQLQEA
SFKHDKEMLNAQINATTKLQRDMIAIKQGVLTAGGFSPTDAARGSINAPTTKILDWNG
SRYWAPGSMRTTAYSGNFTSQGVKQPTPIVKSVKPQVQQSPAPSSVYSVGSVRSQSTQ
STQLTGSGTVSRAPTPSTTTTLSRTSEWVRSQNDRLSPFMGGALQTAFVTPPSSKASS
SSGTVSTVPREILDSWTPAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccgct ggcaacttta acattgccaa
61 caacagtgaa aacactcccc ctcccgttaa ggaagaggcg agtgtcctat ccaacgtaaa
121 agttggattc aagaaaatat tgggggctgt gccgaagcag cccaagccac cagaagtgaa
181 agccaaagat cagcccaggg tgctggtcaa tggcaagacc ctggaggtgc cacccccacc
241 tccaaatggt gaagatgtga tttactataa tagcaaagat gacactgtgc atggcctgcc
301 aaatttgaca acagtcagct gtgaaggtga aaacctcccg tacacggtcc ctcctctcag
361 cgagagggag cacagggcag caccagaacc actacctggt accatactag agatgtggga
421 tggtgagttc taccattatg cgatatacgt ctctggtggc aaggccatag gggtgcacaa
481 acccccagct gcaatcagcc ttgccaccat cgagctcaca cctatatcgc tttactggag
541 gcctgtttat gtccccaact acttagtcca ccctgacaca ctcaagagct tagctggtga
601 aaagtttcca tacactgcat ttagcaacaa ctgttataat ttctgttgct gggttcttga
661 tttgaaagat tcgtggctta accgcagatc aataactaga acaactggtt tcttcaagcc
721 ttatcagtcc tggaacaaga agccactccc gacggtggac gatggaaaaa tcaagaaagt
781 tgccaatgct gtcctatgtg ctcttggttc actattctca aaacctatta aagacttgat
841 tgggaaactg aaaccactga acttcttgaa tctcctcgct tcgtgcgact ggactttctc
901 cggggtggtt gagaccgtca tactagctgc tgagttattt ggagtgtttt ggaccccccc
961 cgacgtgtcg aacttcatcg cgtcactcat cggagacttt gaattgcagg gcccagagga
1021 tttagctgtg gaattggtac cgatcatcat gggcggcatc gggatggtgt tgggattcac
1081 tgccgagaag attggccgaa tgctgtcatc agcagcatcg acccttaggg catgcaaaga
1141 cctaggcaac tacgcccttg acatacttaa actggttatg aagtggttct tcccaaagaa
1201 agaggaaaag gcagagatgg agaccctgag ggccatagag gatgctgtct tagatatgga
1261 ggcgattgga aacaaccacc tcaccgccct gctgaaagac agggacagcc tcctgaccta
1321 catgaagacc ctagacctcg aagaagagaa ggcgagaaaa ttgtccacaa aatcatcttc
1381 gcctgacatc gtgggcacca ttaatgctat actagccaga atcgccgcgg ctaggtctct
1441 cctgcacagg gctaaagaag agatgtacag cagacctagg cctgtcgtgg tgatgatatc
1501 aggaagacca ggagttggta aaacccacat ggccaggcac ctcgccaaaa gtgtagcagg
1561 caccatgagc ggtgatcaga gaataggcct catccctcgc aatggggttg atcactggga
1621 tgcctacagg ggagaacgag tcgtcttgtg ggacgactat ggtatgggta acccagtaaa
1681 agatgccctt gcattgcaag aactagcaga cacttgtcca gtcaccctta attgtgacag
1741 aatagaaaat aaagggaaaa tgtttgacag cgaggtaata attataacaa ccaatttggc
1801 caaccccgcc ccgcttgact atgtcaactt tgaggcttgt tcccgcagaa ttgacttcct
1861 cgtctacgca gatgccccga ccattgagaa ggcgaagaag gactttcccg ggcaaccaga
1921 catgtggaag gagcacttta aagcagactt ctctcatctc aagctcacac tggccccgca
1981 aggtggtttt gacaagaacg gcaacacacc acatgggaag ggaactatga aaaccttaac
2041 ccagggttcc ctcacagcaa gagtggccgg acttgtgcat gaaaggaaag atgagtttca
2101 actgcaaggt ggagagctac aggtctacaa ttttgataca aataaggtgt cagctttcag
2161 gaagcttgct gcagacaata actatggatt cctggagaca atgagagtcg gttcctcact
2221 caaggatgtc aagacagtgg aggacctcaa atgtgctctt aagagtgtca gcttcaaaga
2281 atgtgaaata atctacagaa atgtcaagta ccgcatatca tcagacggtt gcggcaaggt
2341 cagcatagag aaactggcag ataacaactc ccaaacaacc agagaaatca tcacggccgt
2401 cactagacta caacaggctc gtgctaggta ttacatcagc tgcttccaag acctagtcta
2461 cacactcttg caagttgccg gggcctcatt tgttatcaat agaatagtca agaagttcaa
2521 ctgggaacga tgggtcaagg ctccagagac agatgaaccc acaccaagta acgataagcc
2581 cgacactgaa gaagaatggg agatcgcccc caaagatgtg gactctgaag gtaaaaaggg
2641 gaagaacaag aaaggcaggg gacgcaaaca cactgcattc tccagcaaag ggcttagtga
2701 tgaggaatat gacgaattca agagactgag ggaagagaaa cagggccgct acacaataga
2761 agagtacctc caggatagag atcggtacta cgaagagctg gcggtggccc gggccactga
2821 agagaacttc tgtgaagagg aagagataaa gatcaggcaa aggatattcc gccccaccaa
2881 aaagcagagg aaggaggaac gtggggttct gggactcgtc acaggagcag acatcaggaa
2941 acgaagaccc gacgacttcc aacctaaagg gaaactgtgg gcagatgatt ctaggagcgt
3001 cgactacaat gagaagatcg agtttgaagc tcctcctagc gtctggtcaa gaatcgtccc
3061 gcttgggact ggctggggat tttgggtctc atccaatttg ctaattacca ctacacatgt
3121 gttgcccaag ggcatcaaag agctttttgg agtggacatc aaacaagtcc aagtccataa
3181 atcaggtgaa ttttgcagat tcaggttccc aaagccagtg aggcccgatg tctctgggtt
3241 gatattagaa gaaggggccc ctgaaggaac agtgtgctct gttctcatca agaggtcaac
3301 aggagagatg atcccccttg cagttaggat gggtacccac gcctctatga agatccaggg
3361 gcgtactgtt ggcggccaga tgggcatgct gctcactgga gccaacgcta agaatatgga
3421 tttaggtacc ggtcccgggg attgtggttg cccgtacata tacaagaggg gcaatgacat
3481 tgtggtggct ggtgtccaca cagcagcagc acgcggaggc aacacggtca tctgtgcaac
3541 ccaagggcct gatggtgagg cggtgttaga agggggagag gaccacggca cctactgtgg
3601 agccccaata ctggcccctg gtaaagcgcc gaagcttagc acaaagacca aattctggcg
3661 ctcgtccccc gactctcttc cccctgggac gtatgaacca gcttaccttg ggggtaagga
3721 cccccgcgtg gagaaagggc catcacttca gcaagtgatg cgagaccaac tcaaaccctt
3781 cacagagccc aggggcaagc cacctagacc gtcagtactg gaggaagcca agaagacagt
3841 catgaatgtg ctggaacaaa ccatagaacc agctaagcca tggacctact ctcaagcctg
3901 cgcttcactg gataaaacaa catccagtgg cagccctcat catgtcagga agaatgaaca
3961 ctggaacggg gaatctttca ctgggcctct tgcagatcaa gcctcaaaag ctaacctaat
4021 gtatgaggag ggtaaacata tgaaccctat gtacacagca gctctcaagg atgagctggt
4081 gaaaactgat aaaatctaca agaaaatcaa gaagaggctg ttgtggggat ctgatctggg
4141 aacaatgctg aggtgcgctc gggcatttgg aggattgctt gacagcatga aagagagctg
4201 tatctcctta ccctgcagag ttggcatgaa tataaatgaa gatggaccac tcatatttga
4261 aaaacattct aaatacacct accactatga tgctgattac tctagatggg actcaacaca
4321 gcagagggct gtactgagtg cagccatgga ggtaatggtg aaattttccg ctgagccgga
4381 actggcccag gtagttgccg aagacctcct tgcacccagc cgtcttgacg tgggtgattt
4441 cgtcatctcc gttcaagaag gtcttccatc gggtgtcccc tgcacgtcac agtggaattc
4501 aatcgctcac tggatcctga ccctcagtgc tatgtccgag gtctctggtc tttcacctga
4561 ggttgtgcaa gccaactcct gcttttcatt ctatggggat gatgaaatag tcagcacaga
4621 cataaacctg gatccggaaa aactcaccag gaaactgagg gagtatggcc tcgtcccaac
4681 taggccagac aaaactgagg gcccacttgt aattacccag gatttgaatg gcctcacatt
4741 cctgagacga accatagtgc gggaccccgc aggatggttt ggcaaattgg accgtgactc
4801 catcctaagg cagttgtatt ggaccagagg gcccaaccat gagaacccct ttgaaagcat
4861 gattccccac tcccagagag caacccagct aatggccctc cttggggaag cctcgttgca
4921 tggtccccag ttttacaaaa aggtgagtaa aatggtcatc aatgagatca agagtggtgg
4981 tctggagttt tacgtgccca gacaggaggc catgttcaga tggatgagat tttcagacct
5041 cagcacgtgg gagggcgatc gcaatctggc tcccgagaat gtgaatgaag atggcgtcga
5101 atgacgcagc tccatcgaat gatggcgcgg ctggcctcgt accagagatc aaccatgagg
5161 tcatggccat agaacctgtt gcaggggcct ctttagcagc ccctgtcgta ggacaactca
5221 atataattga tccctggatt agaaataatt ttgtgcaagc ccctgctgga gaatttactg
5281 tttcacctag aaatgctcca ggtgaatttt tattagatct agagttaggc cctgagttga
5341 acccctacct tgctcacctt gcacgcatgt ataatgggca tgcaggtggt atggaggtgc
5401 agatagtgct tgctgggaat gcgttcacag cgggcaaaat cctgtttgca gttataccac
5461 ctggattccc ctatgaaaat ttgtcacctg cacaattgac catgtgcccg catgtagtgg
5521 tggatgtgag gcagcttgaa ccaatcttgc tgcccatgcc agacatccgc aataccttct
5581 tccattacaa tcagagcaac gggccaaaac ttaggttagt agctatgctt tacacacccc
5641 taagggctaa taatgctggt gaagatgttt tcacagtttc ttgcagggtt ctgacccgcc
5701 catcaccaga ctttgaattt aatttccttg tccccccttc tgttgaatct aagactaaag
5761 cttttacact cccaattctt aagatatctg agatgacaaa ttcaaggttt cccataccag
5821 ttgaccagat gtatactagt aggaatgaaa atatagttgt tcaaccacag aatggtaggg
5881 tgacacttga tggagagcta cagggcacaa ccacactaca accggtgtcc atttgtgggt
5941 tccgagggac actgcagacc aggctggcag accaaccaaa ttacacatac caagtacacc
6001 ttgagaattt ggacggctca cccgtcgacc cgacagatga agtcccagcc cctttgggaa
6061 caccagattt ccaggcccag ctgtttggag ttatcagtca aaggagtagt gacaatgcca
6121 ccagggcaca tgaggccagg gtcaacacca acgatcccac cttcgcacct cagatcgccc
6181 aggtgcgttt caaatcacca tccaacgact tctttgacaa tgaacccatt aaattcacac
6241 cagttgggat tagtgttgat agccaaaaca gctacaacca atggctcctt cccaggtatg
6301 gtgggcacct gacaaacaac actcacctgg ccccctctgt gtccccaatg ttccccggcg
6361 agcagattct cttcttccgc tcgttcatgc caggtgctag tggtcacact gatggtgcta
6421 ttgactgcct tttgccacaa gaatgggttg cccatttcta tcaggaggcc gcgactgcgc
6481 aaacagacgt ggctctgatc agatttgtga atcccgacac aggcagagtg ttatttgaag
6541 ggaagttaca caagcagggc tttataacca tctctaacag tggggaccac cctattgtta
6601 tgcccgctaa tgggtacttc aggtttgagg catgggttaa ccagttttat tctctcgccc
6661 ccgtgggaac tggaagtggg cgcagaagga tccaataatg gctggagctt ttcttgcagg
6721 tctggctggt gatgtggtga cctctggcat cgggtcgctc atcaatgcag gtgctaatgc
6781 agtaaaccaa aaggttgaat atgacttcaa taggcaactc caagaagctt ctttcaaaca
6841 tgacaaggag atgttgaatg cccagatcaa tgccacaacc aaattgcaga gggacatgat
6901 cgccatcaag cagggggtct tgaccgctgg cggcttttcc cccactgatg ctgcaagagg
6961 ttccatcaat gctccaacca ccaaaattct tgactggaat gggtccaggt actgggcgcc
7021 aggatcaatg agaacaacag catactctgg taatttcacc tcacaaggag ttaagcagcc
7081 cacacctata gttaaatctg tgaaacctca agtacagcaa tctcctgccc cttcttctgt
7141 ttattctgta gggtctgtta ggtcgcaatc aacacaatca acccaattga cagggtcagg
7201 gactgtatca agggcaccca ctccctcaac aactacaaca ttgtctagga caagtgagtg
7261 ggtaaggagt caaaatgata gactgagccc ctttatggga ggcgcgcttc agacagcttt
7321 cgtcacgccc ccatcgagta aggcttcgtc ttcatcagga acagtctcaa ccgtccctag
7381 agaaattttg gactcctgga ctcctgcatt taacacgcgc aggcagccgc tcttcgctca
7441 catacgtaag cgaggggagt cacgggctta gtgaaaagaa tgatttggtt agattatcct
7501 tctttcttac ctatcttatc tttt
//