Typing tool
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Typing tool
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Complete norovirus genomes
| AB039778 | GII.6 | |
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| GII.P6 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS AB039778 7546 bp RNA linear VRL 05-SEP-2002
DEFINITION Norwalk-like virus genomic RNA, complete genome, isolate:Saitama
U16.
ACCESSION AB039778
VERSION AB039778.1
KEYWORDS polyprotein; hypothetical protein; capsid; N-terminal, helicase,
VPg, 3Cpro, RdRp.
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T.,
Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y.,
Gojobori,T. and Takeda,N.
TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like
viruses
JOURNAL Virology 299 (2), 225-239 (2002)
PUBMED 12202225
REFERENCE 2 (bases 1 to 7546)
AUTHORS Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2000) Kazuhiko Katayama, National Institute of
Infectious Diseases, Department of Virology II; 4-7-1 Gakuen,
Musashi-murayama, Tokyo 208-0011, Japan (E-mail:katayama@nih.go.jp,
Tel:81-42-561-0771, Fax:81-42-561-4729)
FEATURES Location/Qualifiers
source 1..7546
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/isolate="Saitama U16"
/db_xref="taxon:95340"
CDS 5..5098
/note="N-terminal, helicase, VPg, 3Cpro, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="BAC11824.1"
/translation="MKMASNDATSAFGSQNSVNDSINTTPSNKEEVGAFSNIKVGLKK
MLGAVPKNTKAPSGDRHCPTVKVGSKTLVIPPEPPNGEDIVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVSGGKALGVHKPP
AAISLATVELTPISLYWRPVYTPNYLVHPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLCRRSISRTTGFFKPYQSWNRKPLPTIDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFQLQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMNGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGDSLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLRVALRDVKFNECEIIYRNTKYRVSSDGKGTVSVNKVEDLTSQTANEVSSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSEPEK
ETAQSEWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
TDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVDVKQIQIHKSGEFCRFRFPKPIRPDVSGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNESLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPTVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHIRKNDHWNG
ESFTGPLADQASKANLMYEQAKHMQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MVRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPSKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPESVNEDGVE"
CDS 5079..6722
/codon_start=1
/product="capsid"
/protein_id="BAC11825.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNETIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGSSVGATRAHEVHIDTTNPRYTPKLGSVLMYSESSDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 6722..7498
/codon_start=1
/product="hypothetical protein"
/protein_id="BAC11826.1"
/translation="MAGAFFAGLAGDAITNGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPTDAARGAVNAPITKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLSRSDSPKVKINSDSASVYSSTSTAPSQST
HSTALTAGSGSSRTTSSSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSRA
SSNGSVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac ctctgccttt ggcagtcaaa actctgtcaa
61 tgacagtatc aacaccaccc cttccaataa agaagaggtt ggtgcattct ccaacatcaa
121 agttggactt aagaaaatgc tgggtgccgt gcctaaaaac accaaagcac ccagcggtga
181 ccggcactgc cccacagtta aggtcgggtc caaaacacta gtgatcccac cagaaccccc
241 aaacggtgag gacattgtgc agttcgacgc aaaatcagaa actgtgcgtg gactacccga
301 cctgacgaca gtgcagaatg aacatgagaa caccccgtac acagtccctc cactgagtga
361 aagggaacac aggccagcca ctgagccact ccccggcaca atattagaga tgtgggatgg
421 tgaattctac cattactcca tctacgtcag tggaggcaaa gctctggggg tgcacaaacc
481 cccagcggct ataagcctcg cgacagtgga actcactccc atatcccttt actggcgacc
541 tgtctacact ccaaactacc tggtccaccc agacacactg aagggtcttg ctggtgaaaa
601 gtttccctac acggccttta gtaacaactg ctacaatttc tgttgttggg tgcttgaact
661 taacgacacg tggctttgca ggaggagtat atccagaacc actggcttct ttaaaccata
721 tcagtcttgg aacaggaagc ccctccccac cattgatgat ggaaaaatca agaaggtggc
781 caatgcaatt ctctgcgcac ttggctcatt gttctcaaag ccaatcaaag acctactggg
841 caaactcaag ccacttaacc tactacatct gcttgcgtcg tgtgactgga cgtttgcggg
901 tatagtagag acagtcatct taatggcgga actcttcaat gtattctgga ccccacctga
961 tgtttccaat ttcatagcct ccttgatagg tgattttcag ttacaaggac ccgaggactt
1021 ggctgtggag ctcgtccccg tggttatggg aggcatagga atggtcctcg gtttcactgc
1081 cgagaagatt ggccgcatgt tgtcatctgc tgcgtcaacc ctaagggcat gcaaagatct
1141 ggggaactac gccctagaca tactaaaact agtcatgaag tggttctttc caaagaaaga
1201 agagaaagcc gaaatggaga ccttgagggc gattgaggat gccgtattag acatggaggc
1261 aatagggaac aaccacctca cgacactcct taaggacaag gacagcctta ctgcatttat
1321 gaaaacccta gacctagagg aggagaaagc aagaaagcta tcgacgaagt catcctcacc
1381 agacatcgtc ggcactatca acgccatact ggctagaata gcagccgcta ggtccctcct
1441 acacaaggcc aaggaagaga tgtttagcag aattagacca gtagttgtca tgatctcagg
1501 tagacctggc attggtaaaa cccatatggc aaggcatctg gctaagagta tagccaatac
1561 aatgaatgga gaccagagag ttggacttgt cccgcgcaac ggggttgacc actgggatgc
1621 ttacaggggg gagagagtgg tcctgtggga cgactatggt atggggaacc ctgtcaaaga
1681 tgccttgaca ctgcaagaac tggccgacac ctgtccagtc actttgaatt gtgataggat
1741 tgagaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acttggtcaa
1801 ccctgcaccc ctcgattatg tgaacttcga ggcttgctcc aggaggattg atttccttgt
1861 ctatgcagag tcaccagaaa tagaaaaggt caagagagac ttccctggtc agcctgatat
1921 gtggaaagat cacttcaaac cggacttttc ccacataaag ctgactttgg ccccccaggg
1981 cgggtttgat aagaatggca acaccccaca tggtaaaggc accatgcgtt ctctgaccca
2041 ggggtctctg actgcaagag tggcgggtct tgttcacgag aggagagatg aattccagct
2101 gcaaggggat agcctacaaa catacaattt tgataccaac agggtctctg cgtttaggaa
2161 actggccgca gacaacaagt atggaatcat ggagacaatg agagtgggtg cggcactcaa
2221 gaatgtcaag actttggaag acctcagagt tgctttgaga gatgtaaaat tcaatgaatg
2281 tgagatcatc tacaggaaca ccaagtaccg ggtctcatct gatggcaaag gcacagtctc
2341 tgttaacaaa gtcgaggacc tcacttccca aaccgcaaac gaggtgagtt cagccctcct
2401 caggctcaga caagccaggg ccagatatta tgtcagctgc ttccaggacc ttgtctacac
2461 tctcatacag gtcgctgggg cttcatttgt cgtcaacagg atctccaaga ggttctgctg
2521 ggaaagatgg gtaaaaccga ccgagaccca ggagacgagt gagcccgaga aggaaactgc
2581 ccagagtgaa tgggagattg aacccaagga cacagaacca gaaggtaaga agggcaaaaa
2641 caagaaagga aggggcaaga aacacacagc cttctccagt aaaggcctga gtgatgaaga
2701 gtatgatgag tacaaaagga ttagggaaga aagaaatgga aagtactcca ttgaggaata
2761 ccttcaagac cgtgaccgct actacgaaga agtagcagtt gcccgagcaa cagaggagga
2821 cttctgtgaa gaggaagagg ccaagataag gcaaagaatc ttccgcccaa caaggaagca
2881 aagaaaagag gaaaggggtg tgcttggtct agtcactggc acggatatca ggaagagaag
2941 accagatgac ttccaaccaa agggcaactt gtgggcagat gacactagga gtgtggacta
3001 caatgagaga cttgacttcg aggccccccc aagcgtgtgg tcaaggatag tcccactggg
3061 caccggctgg ggcttctggg tctcatccaa cctcctaatt acaacaacac atgtcctgcc
3121 taagggtgtt aaggaactct tcggcgtcga cgtcaaacaa atccaaatcc acaaatctgg
3181 agaattttgc aggtttagat tcccaaaacc aatcagacca gacgtctcag ggcttgtatt
3241 ggaagaaggt gcaccagagg gcactgtctg ctccatactc gtgaagagac caacaggtga
3301 gatgatccct ctagcggtga gaatgggcac gcatgcatct atgaaaatcc agggcaggac
3361 tgttggtggc caaatgggaa tgctcctcac tggggcgaac gcaaagaaca tggacctcgg
3421 caccggcccg ggagattgcg gttgcccata catttacaag cgcggcaatg acatagtcgt
3481 ggcaggtgtc cataccgcag cggcccgagg aggcaacact gtcatctgtg ccactcaagg
3541 gcaggacggg gaagcagttc ttgaagggaa tgagagcctt ggcacttact gtggtgcccc
3601 aatcctaggt cctggcaagg cgcccaagct cagcacgaag accaagttct ggcgctcatc
3661 gcctgatgcc ctgccacccg gcacatatga acctgcctac ctaggaggca aagaccccag
3721 agtagagaag ggaccttccc tgcagcaagt catgagggat cagttgaaac ctttcacgga
3781 acccaggggc aaaccaccaa gacccacagt cctggaagaa gctaaaaaga cagtaatgaa
3841 tgtcctggaa cagaccattg accctgctaa accgtggact tactcacaag catgtgcttc
3901 cttggataag accacttcca gtggcagccc ccatcacatc aggaagaacg accattggaa
3961 cggagagtct tttacaggcc ccctcgcaga ccaagcatcc aaagctaatc tcatgtatga
4021 gcaggccaaa cacatgcagc ctgtgtacac agctgcactc aaggatgagc tcgtcaaaac
4081 tgacaaaatt tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
4141 ggtcaggtgc gccagggcct ttggtggtct catggacagc atgaaagcaa gttgcatagc
4201 cttaccgtgc agagtgggaa tgaacatgaa tgaggacggg cctatcattt ttgacaagca
4261 ctccaaatac agataccact atgatgctga ctactctagg tgggactcaa ctcaacaaag
4321 aagcatcttg tccgccgcca tggaagtgat ggtgcggttc tctgcagaac cagaattggc
4381 acaagtcgtt gcagaggacc tcttagcacc cagccagctg gacgttggcg actttgtcat
4441 ctcagttcag gaaggcctac catcaggagt cccgtgcacg tcacaatgga attcaatagc
4501 ccactggatc ttgactttga gtgcaatggc agaagtgtca ggcctctcgc cagatgttgt
4561 gcaagcccat tcctgtttct ctttctatgg tgatgatgag attgtgagca ctgacatcaa
4621 ccttgaccct tcaaaactga cacagaaact cagggagtat ggtctggtcc ccacccgacc
4681 tgacaaaact gaaggccccc tggtcataac tgaggacctc accggcctaa cattcctgcg
4741 caggtcgatt gcgcgggacc ccgctgggtg gtttgggaag ctggatcaag actcaattct
4801 caggcagttg tattggacaa gagggcccaa ccatgagaac ccatatgaaa gcatggtccc
4861 ccactcccaa cgggccacac aactcatggc ccttcttggt gaagcttcat tacacggacc
4921 ccaattctac aagaaggtca gtaagatggt tatcagtgag atcaagagtg gtggtctgga
4981 gttttatgtg cccagacaag aggccatgtt taggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gagtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggttatgg
5161 cacttgaacc ggtggtggga gcctcaattg cagctcctgt cgtcggtcaa caaaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caagaaactc gcctggtgag atgcttttaa atcttgaatt aggcccagag ctcaatcctt
5341 acctgagtca tttatcccgc atgtataatg gttatgctgg tggcatgcag gttcaggtgg
5401 tcctagctgg gaacgcgttc acagctggta aaatcatctt tgccgccgtt ccaccacatt
5461 tccctgtaga gaatattagt gcagctcaaa tcacaatgtg cccccatgtg attgttgatg
5521 tgagacaact tgagcctgtg cttttgcccc tccctgacat aaggaataga ttctttcact
5581 acaaccagga agacaccccc cggatgagac ttgtggccat gttgtataca ccccttagag
5641 caaactctgg tgaggacgtg ttcacagtgt cttgcagggt cttgacccgc ccagcccctg
5701 actttgagtt cacgttctta gtgccaccaa ccgtagaatc aaagactaag cctttcacac
5761 tccctatttt aaccctgggg gaactatcca attccagatt tcctgctcca atagacatgc
5821 tgtacacaga tcccaatgag acaattgtgg tacaaccaca aaatggcaga tgcaccctag
5881 atgggacact ccaagggacc acccagctgg tgcctaccca aatttgctct tttaggggca
5941 cgttaattag ccaaacgtcg aggtctgcag attcaacaga ttcagctcca cgggtgagga
6001 accaccccct ccacgttcag ctgaagaacc tcgacgggac accatatgac ccaacagatg
6061 aggtaccggc agtcctgggt gccatagatt tcaaaggaac tgtgtttgga gttgctagcc
6121 agagaaacac cacagggagc tctgtagggg cgacccgtgc ccatgaggtg cacatagaca
6181 ccacaaaccc tagatacacc ccaaaacttg gttctgtgtt gatgtattct gagtctagtg
6241 attttgatga tggacaacca actcgcttta cccccattgg catgggagca gatgattggc
6301 accaatggga attgcccgaa tattccggtc acctcactct taacatgaac ctagcccccg
6361 cagttgcccc tgctttcccc ggtgagcgca ttctcttctt caggtcagtg gttccatctg
6421 ctggtggtta cggatcaggt caaatagact gcctcatccc acaggagtgg gttcagcact
6481 tctaccagga ggccgcccca tcacaatctg cggtggctct tattagatat gttaaccctg
6541 acactgggag aaacatcttt gaggcaaagc tacatagaga agggttcatc actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc caaatggtta tttcaggttt gaggcctggg
6661 tcaatcaatt ctatacactc acccccatgg gaactggaca ggggcgtagg agagtccaat
6721 aatggcagga gctttctttg ctggattagc aggcgacgcc ataacaaatg gtgtcgggtc
6781 cctgatcaac gctggggcca atgcaattaa tcagaaggta gagtatgatt tcaacaaaca
6841 actccaattg gcatccttta aacatgacaa ggaaatgctg caatcacaag ttctggccac
6901 caaacagctc cagcaggaaa tgatgaacat aaggcaaggg gtcttgaccg ctggcggctt
6961 ttcccctaca gatgccgcga gaggcgctgt aaacgcgcca ataacaaaaa ttttggattg
7021 gaatggcaca agatattttg ctccaaatag catgaaaaca accagttatt cgggtcagtt
7081 ctccagcaat cctgtgcaca ggcaacccac tttgtcccgt tctgattccc caaaagttaa
7141 aattaatagt gattctgcta gtgtatatag ttctacatcc accgctcctt cacaatcaac
7201 ccattctacg gctctgactg cagggtctgg atcatccagg acaacctcct cttccacagc
7261 aacttctacc ctatctagga ccagtgactg ggtgagggga caaaatgaga ggcttagccc
7321 gttcatggat ggtgctctcc aaacaacttt tgtcacacca ccatcgagca gagcttcatc
7381 aaatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgtttaa
7441 cacccatagg cagcctctct tcgctcactt gcgtaggcga ggggagtcac aaatttagtg
7501 aaaagattga ttaggttttc ttctccttct ttctcctttc ttcttt
//