Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| AB039776 | GII.6 | |
|
|---|---|---|---|
| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6731
ORF3: 6731..7510
LOCUS AB039776 7564 bp RNA linear VRL 05-SEP-2002
DEFINITION Norwalk-like virus genomic RNA, complete genome, isolate:Saitama
U3.
ACCESSION AB039776
VERSION AB039776.1
KEYWORDS polyprotein; hypothetical protein; capsid; N-terminal, helicase,
VPg, 3Cpro, RdRp.
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T.,
Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y.,
Gojobori,T. and Takeda,N.
TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like
viruses
JOURNAL Virology 299 (2), 225-239 (2002)
PUBMED 12202225
REFERENCE 2 (bases 1 to 7564)
AUTHORS Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2000) Kazuhiko Katayama, National Institute of
Infectious Diseases, Department of Virology II; 4-7-1 Gakuen,
Musashi-murayama, Tokyo 208-0011, Japan (E-mail:katayama@nih.go.jp,
Tel:81-42-561-0771, Fax:81-42-561-4729)
FEATURES Location/Qualifiers
source 1..7564
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/isolate="Saitama U3"
/db_xref="taxon:95340"
CDS 5..5098
/note="N-terminal, helicase, VPg, 3Cpro, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="BAC11818.1"
/translation="MKMASNDATAALGSQNSVNDSVNTTPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETISGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKVKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIVETMRVGAALKN
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDHTSQTANEVSSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEK
EVAQGRWEIEPKDAEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHIKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITENLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5079..6731
/codon_start=1
/product="capsid"
/protein_id="BAC11819.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSPMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVPLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAADSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGPQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESNDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGRLALNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDYLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
CDS 6731..7510
/codon_start=1
/product="hypothetical protein"
/protein_id="BAC11820.1"
/translation="MAGAFFAGLAGDVVSNGIGSIINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMDIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPPQHTAPPKSKLQSGSASVYSSPSTVSSQS
THSTMLSAGTGSSRSISTSTATSTLSRTSDWVRGQNERLSPFMDDALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccctt ggcagtcaaa actctgtcaa
61 tgacagtgtc aacaccaccc cttcaaataa agaagaggtt ggtgcatttt ccaacatcaa
121 agttggattt aagaagatgc tgggtgccgt acctaagggc actaaagcac ccagcagtga
181 ccagcactgc cccacagtta agatcgggcc caaaacacta acagtccccc ctgaaccccc
241 aaatggtgaa gacaccgtac agtttgatgc aaagtcagaa actataagtg ggctaccgga
301 cttgacaaca gtgcaaaatg aacacgaaaa taccccatac actgtccctc cattaagtga
361 gagggaacac agaccagcca ctgagccgct tcctggcaca atattggaga tgtgggatgg
421 tgaattctac cactattccg tgtacgtcag cggcggcaaa gctctagggg ttcacaagcc
481 cccggcagct ataagcctcg cgacgataga gctcaccccc atatctctat actggaggcc
541 cgtttacacc cccaactacc tggtctgccc agacacattg aaaggtctcg ctggtgaaaa
601 gttcccctac acggccttca gtaacaattg ttataacttc tgttgctggg tgcttgagct
661 caatgacacg tggcttagta gaagaagcat ctccagaact accggcttct tcaaaccata
721 ccagtcttgg aacaggaagc ctctcccaac cgttgatgat ggaaaagtca aaaaggtggc
781 caacgcgatc ctctgtgcac tcggctcgct gttctcaaag ccaattaaag acctgttagg
841 caagctcaaa ccattgaact tgctacactt gctcgcgtca tgtgattgga cgtttgcagg
901 tatagtggag acagtcatct taatggcgga acttttcaac gtcttttgga ctccgccaga
961 tgtctctaat ttcatagcct ccctgatagg tgattttgaa ttgcaggggc ctgaggactt
1021 ggctgtggag cttgttcccg tggtcatggg cggtatagga atggttcttg gcttcaccgc
1081 tgagaagata ggtcgcatgc tgtcgtccgc tgcatcaaca ctgcgggcat gcaaagacct
1141 agggaactat gcccttgaca tacttaaatt ggtcatgaag tggttcttcc caaagaaaga
1201 ggagaaagcc gagatggaaa ccttaagggc gattgaggat gccgtcctag atatggaggc
1261 tatagggaac aaccatctca cgaccctcct caaggataag gacagtctca cggctttcat
1321 gaagaccctg gacctagaag aggagaaggc aaggaagcta tctaccaaat catcctcgcc
1381 ggacatcgtc ggcactatca acgccatact ggctagaata gctgccgcca gatccctcct
1441 gcacaaggcc aaagaagaga tgttcagtag gatcagacca gtggttgtca tgatctcagg
1501 cagacctggc attggcaaaa cccatatggc aaggcatttg gctaaaaaca tcgccaacac
1561 catgagtggt gaccagagag tcgggctcgt tccgcgcaac ggagtcgacc actgggacgc
1621 ctacagggga gagagagtgg ttttatggga cgactatggc atgggaaacc ccgtcaaaga
1681 tgctttaaca ctacaagaat tggctgacac atgcccagtc actctaaatt gtgataggat
1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata attacgacca atctagttaa
1801 tcctgcacct ctcgattatg tgaacttcga ggcgtgctct agaagagttg acttcttggt
1861 ctatgcagag tcaccagaaa ttgaaaaggt taagagagat ttccctggtc aacctgacat
1921 gtggaaagat tatttcaaac aagacttttc ccacataaag ctgactctgg cccctcaggg
1981 cggatttgac aagaatggca acaccccgca tggtaagggt accatgcgat ccctaactca
2041 agggtccctg actgcaagag ttgcaggcct tgttcatgag aggaaggatg agttccagct
2101 acaagggaac gaccttcaaa catacaactt tgacaccaac agggtctccg cattcaggaa
2161 gctggccgca gacaacaagt atggaatcgt ggaaacaatg agagtgggtg cggcactcaa
2221 aaacgtcaag actttggaag atctgaaagt tgccttgagg gatgtaaaat tcaatgagtg
2281 tgaaataatt tacaggaact ccaagtatcg agtctcttcc aacggtaagg gctctgtttc
2341 tgttgacaaa gttgaggacc acacatctca gactgcaaac gaggtgagct cagcactcct
2401 cagactcaga caggcaaggg ccagatatta tatcagctgc ttccaagacc tcgtctacac
2461 tctcatacag gttgctgggg catccttcgt tgttaacaga atctccaaaa ggttctgctg
2521 ggaaaggtgg gtaaaaccaa ccgagaccca agaagcgagt gagcccgaaa aggaagtggc
2581 tcaaggtaga tgggagattg agcccaagga cgcagaacca gaaggcaaga agggcaagaa
2641 caagaaagga agaggcaaga aacacacagc tttctccagc aaaggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagagaaga gaggaacgga aaatactcca ttgaggaata
2761 cctgcaagac cgggaccgct actatgaaga agtggcagtt gcccgtgcaa cagaggagga
2821 tttctgtgaa gaggaagagg ccaagataag acaaagaatc ttccgtccga caaggaaaca
2881 gagaaaggag gaaagggggg tgcttggatt ggtcactggc tcagacatca gaaagaggag
2941 accagacgat tttcaaccaa aaggcaacct gtgggcagat gacaccagga gtgtagacta
3001 caatgagaga cttgacttcg aggctccacc aagcgtctgg tcaagaatag tcccattggg
3061 tactggttgg ggtttctggg tttcatccaa cctcctgatc acaacaacac acgtcctgcc
3121 caagggggtc aaggaactct ttggagttga aatcaaacaa atccaaattc acaagtctgg
3181 agagttttgt aggtttagat tcccaagacc aatcaggcca gatgttacgg ggctcgtgtt
3241 ggaggaaggt gctccagaag gcactgtctg ctccatactc ataaagagac ctacaggtga
3301 gatgatcccc ctagcagtga ggatgggcac gcatgcatcc atgaaaatac agggtaggac
3361 cgtcggtggc cagatgggga tgcttctcac aggggcaaac gcgaagaaca tggatcttgg
3421 caccggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg acatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg gggcaatact gttatatgtg ccactcaagg
3541 gcaagatggg gaggcagtcc ttgaaggaaa tgaaaacctt ggtacttact gtggtgcccc
3601 aattttgggt cctggcaagg cgcctaaact cagtacgaag accaaatttt ggcgctcatc
3661 accagatgcc ctacctcctg gcacatatga acctgcttac ctgggaggta aggaccccag
3721 agtagaaaaa gggccctccc tgcagcaagt catgagagac cagctgaaac ccttcacaga
3781 gcccaggggc aagccaccta gaccagcagt tttagaagaa gctaaaaaga cagtgatgaa
3841 tgttctagaa caaaccattg accctgctaa gccatggacc tactcgcaag catgtgcttc
3901 actggacaag accacttcta gtggtagccc ccaccatatc aagaaaaatg accattggaa
3961 tggagagtct ttcactggtc cccttgcgga tcaagcatct aaagccaacc tcatgtatga
4021 acaggcaaaa catgtgcagc ccgtgtacac ggccgcgctc aaagatgagc ttgttaagac
4081 tgataagatc tacaaaaaga taaagaagag gcttctatgg gggtcggacc ttggtacgat
4141 gatcaggtgt gccagggctt ttggcggcct catggacagt atgaaagcaa gttgcatagc
4201 ccttccatgc agggtgggga tgaatatgaa tgaggatggc cccatcatat ttgacaaaca
4261 ctctaagtat aggtaccact atgatgctga ctactctaga tgggattcaa cccagcaaag
4321 gagcattctt tctgccgcta tggaggtgat ggtgcggttc tctgctgaac cagaattggc
4381 acaagtggtc gcagaggacc ttctggcacc tagccagcta gatgttggcg attttgtcat
4441 ctcagttcag gagggtctgc catcaggagt cccatgtaca tcacaatgga attcaatagc
4501 acactggatt ctaactctga gcgcaatggc agaagtatca ggtctctcac cagatgttgt
4561 tcaagcccac tcctgttttt cattttatgg cgatgatgag atcgttagca ctgacataaa
4621 ccttgacccc atgaaactga cacagaaact cagggagtac ggtctggtcc ccacccgacc
4681 tgataaaact gaaggtcccc tcgtcataac tgaaaacctc accggcctga cgttcctgcg
4741 taggtcgatt gcacgggatc cagctgggtg gtttggaaaa ttggatcaag actcaattct
4801 caggcaatta tactggacaa gggggcccaa tcatgagaac ccgtacgaga gcatggttcc
4861 ccattctcag cgagccacac agctcatggc ccttcttggt gaggcctcat tgcatggccc
4921 ccagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga
4981 attttatgtg cccagacaag aggccatgtt taggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggttatgg
5161 cacttgaacc ggtggtagga gcctcaatcg cagctcctgt tgtcggtcag caaaatataa
5221 ttgacccctg gattagagaa aattttgtcc aagcaccaca gggcgagttt actgtttcgc
5281 caaggaattc gcctggtgag atgcttttaa accttgagtt gggcccagaa cttaacccct
5341 atttgagtca tttgtccccc atgtacaacg gatatgctgg tggcatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggga aaatcatctt tgccgccgta ccaccacatt
5461 ttcctgtgga taatattagt gcagcccaga taactatgtg tccccatgtg attgttgatg
5521 tgagacagct tgaaccagtg cctctgcccc tccccgatat aaggaatagg ttcttccatt
5581 acaatcagga gaacaccccc cggatgagac tcgtggccat gctctacacg cccctgaggg
5641 ccaattctgg tgaagacgtg ttcactgtgt cttgtagggt tttgactcgc cccgctccag
5701 attttgagtt tacattctta gtaccaccaa ctgttgaatc aaaaacaaaa ccttttaccc
5761 tacctattct aactcttggt gagttgtcta actcccgttt tccggctgct atagatatgc
5821 tttatactga tcccaatgaa tcaatagttg ttcaacccca aaatggtagg tgcactcttg
5881 atggcacatt gcaaggcaca acacaattgg ttccaacaca gatttgtgct tttagaggca
5941 ccctgatcag ccagaccgcg agagcggccg actcaacaga ttctccccag agagcccgtg
6001 atcatccatt acacgtccag gtcaagaacc tagacggcac acagtatgac ccaacagatg
6061 acatacctgc agtcctgggg gctattgact tcaaaggcac agtatttgga gtggctagtc
6121 agagggatgt ctctggacca caagaacagg gccactatgc cacccgagcc catgaagcac
6181 acattgatac aactgaccca aagtatgcac ccaaattagg cacaattctt atcaaatctg
6241 aatccaatga tttcaccaca aatcaaccca ttaggttcac tccagtgggc atgggtgata
6301 acaattggag acagtgggaa ttacctgatt attctggcag attagcctta aatatgaacc
6361 ttgcccccgc tgtttcccca tctttccctg gtgaacgaat ccttttcttt aggtctatag
6421 taccatcagc tggaggctac gggtctggct atatagacta tctcataccc caggaatggg
6481 tgcaacactt ctaccaggaa gcagcacctt cacaatccgc tgtcgcactg gttaggtatg
6541 ttaaccccga tactgggcgt aacatctttg aggccaagtt gcacagagaa gggttcctca
6601 ccgtggccaa ttctggaaac aatcctattg tagttccccc taatggttat tttagatttg
6661 aggcttgggt taatcagttt tacacacttg cccccatggg atctggacag gggcgtagaa
6721 gggcccagta atggctggtg ccttcttcgc aggattagca ggtgatgtcg tgtcgaacgg
6781 catcggttcc atcatcaatg caggtgccaa tgcagtcaat caaaaggttg agtatgattt
6841 caataagcaa cttcagatgg catcattcaa acatgacaag gagatgttac aatcacaggt
6901 gttggcaact aaacagctac agcaggaaat gatggacata aagcaaggga tgttgaccgc
6961 tggcggcttc tcccctgcgg atgctgctag aggggctgtc aatgctccaa tgacaaaaat
7021 actggactgg aatggcacaa ggtattgggc acctaacagt atgaaaacca caagctattc
7081 aggacagttt tctagtagcc ccgtccacag gtctcctgct cctccccaac acactgctcc
7141 accaaaaagt aagttgcaaa gtggttctgc tagtgtgtat agctccccct ctactgtttc
7201 ttcacaatca acccattcaa caatgttgtc tgcaggaact gggtcgtcca gatccatctc
7261 cacgtccaca gcaacctcta ccttgtctag aaccagcgac tgggttagag gacagaatga
7321 aaggcttagc ccgttcatgg atgatgctct ccaaactacc tttgtcacac caccatcgag
7381 caaggcttca tcaaatggga cggtctcgac cgtgcccaaa gctgttttgg actcctggac
7441 tcctatgttc aacacacata ggcagcctct cttcgcccat ttgcgtaggc gaggggagtc
7501 acaaatttag tgaaaagagt gattaggctt tcttcccctt tttctttctc cttttctctc
7561 tttt
//