Typing tool
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Typing tool
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Complete norovirus genomes
| AB039775 | GII.12 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS AB039775 7521 bp RNA linear VRL 05-SEP-2002
DEFINITION Norwalk-like virus genomic RNA, complete genome, isolate:Saitama
U1.
ACCESSION AB039775
VERSION AB039775.1
KEYWORDS polyprotein; hypothetical protein; capsid; N-terminal, helicase,
VPg, 3Cpro, RdRp.
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T.,
Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y.,
Gojobori,T. and Takeda,N.
TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like
viruses
JOURNAL Virology 299 (2), 225-239 (2002)
PUBMED 12202225
REFERENCE 2 (bases 1 to 7521)
AUTHORS Katayama,K.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2000) Kazuhiko Katayama, National Institute of
Infectious Diseases, Department of Virology II; 4-7-1 Gakuen,
Musashi-murayama, Tokyo 208-0011, Japan (E-mail:katayama@nih.go.jp,
Tel:81-42-561-0771, Fax:81-42-561-4729)
FEATURES Location/Qualifiers
source 1..7521
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/isolate="Saitama U1"
/db_xref="taxon:95340"
CDS 5..5104
/note="N-terminal, helicase, VPg, 3Cpro, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="BAC11815.1"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKNISIKSCQIVYGGCTYMLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6692
/codon_start=1
/product="capsid"
/protein_id="BAC11816.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPTLTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELRGTT
QLLPTAICPFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEN
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGERILFFRSHIPLKGGVADPVIDCLLHQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6692..7471
/codon_start=1
/product="hypothetical protein"
/protein_id="BAC11817.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGATKTTAFSGGFTNASHAGTVDLTKKTSATPAPTSVSRPSSIASTVSTRSTL
VSGSFNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaaggc ccccacgacc
181 ccccacccca gaactggtca aaaagatccc tcctcctcca cccaacgggg aggatgaacc
241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctta ccactgtcag
301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
361 ggacgccaag gagccactaa ctggaacaat cctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat
481 cagcctcgcc aaggttgaac taacaccact ctctctgttt tggagaccag tgtatacacc
541 acagtatctc atctctccag acactctcag gagactgcac ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccttacc aagactggaa
721 taggaaaccc cttcccacca tggatgactc caagttgaag aaggtagcta acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc
841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact
1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaagatcgg
1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaggcaa ttgagaacaa
1261 tcacatgact gccctcctca aagacaaaga cagcctggca acctatatga gaactcttga
1321 cctcgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg atatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggagctc tccagcagac caagacctgt tgttgttatg atatcaggca ggccagggat
1501 agggaaaacc caccttgcca gggaattggc caagagaatc gcagcttctc tcacagggga
1561 ccagcgtgtg ggtctcatcc ctcgcaatgg tgttgatcac tgggacgcat ataagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagtaatccc atccacgacg ccctcaggtt
1681 acaagaactt gctgacacct gccccctcac gctaaattgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccact
1801 ggactatgtc aattttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagatgc
1861 ccctgaggtc gagaaggcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgctcgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 ccccaccacc ttcaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtac gggttgatgg acacaatgag agttggaaga cagctcaagg atgtcaggac
2221 catgccagag ctcaaacaag cactcaagaa tatctcaatc aagagttgtc agatagtgta
2281 tggtggctgc acctatatgc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga acttgccggt gccctacacc atcttaggtg
2401 tgccagaatt agatactatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagacctttg
2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtctcatc cgacgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aacggcaaat actccataga
2761 ggaatacctt caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggatca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aaacaaattc agatacacaa
3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgacg tgacaggcat
3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ctactcatca agaggccaac
3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcactgtt gggggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 tctgggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg ggaatgacta
3481 cgtagtcatt ggagtccaca cggctgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaagggaa cctactgtgg
3601 tgcaccaatc ttaggtccag gaagcgcccc aaagctcagc accaagacta agttctggag
3661 atcatccaca gcaccactcc cacctggtac ctatgagcca gcctaccttg gcggcaagga
3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggaccagc tgaaaccatt
3781 caccgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtt cttgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg
3901 cgcatccctc gacaagacca cttccagtgg tcacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttta caggcaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaagag ggaaagaaca tgaccccagt ctacacaggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc
4141 gaccatgatc cggtgcgctc gagcgtttgg gggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cccgtcagag taggtatgaa tatgaatgag gatggtccta tcatctttga
4261 gagacactcc agatacaaat accattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgca
4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggacg taggtgactt
4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actttctgag gttacaaacc tgtcccctga
4561 cattatccag gccaactctc tcttttcctt ctacggtgat gatgaaattg tgagcacaga
4621 cataaagttg gacccagaaa agttgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgccctgat aagactgagg gaccccttgt tatctctgag gacctgaatg gcctaacctt
4741 cctgcggagg actgtgaccc gcgacccagc tggctggttt ggaaagttgg aacagagttc
4801 aatactcagg caaatgtatt ggactagggg ccctaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga
5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggtcaaaaca
5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatggg gagttcacgg
5281 tttcaccccg caactcgccc ggggaagtcc tattaaactt ggaattaggc cccgaactaa
5341 atccatacct agcacacctt tctagaatgt ataatggtta tgcaggtggg gttgaggtgc
5401 aagtactact ggctgggaat gcgttcacag ctggaaaatt ggtgtttgcc gcagttcccc
5461 ctcattttcc attagaaaac ataagccctg gccagataac tatgttccct catgtaatta
5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc agatgttagg aataatttct
5581 ttcattataa tcagcagaat gaaccgagga tgagactcgt ggcaatgctt tacactcctc
5641 ttagatctaa tggttctggt gatgatgtat ttactgtctc ctgcagggtg cttacccgac
5701 cttcccctga ttttgatttt aattacttgg tccctcctac cgttgaatct aaaactaaac
5761 ccttcacact ccctaccttg actatagggg agttaaccaa ctccaggttc cctgtgccca
5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aatgggagat
5881 gcgcgctaga tggggagctg cggggcacga ctcagctcct ccccacggcg atttgcccat
5941 tcaggggccg gatcaatcag aaggtgagtg gagaaaacca tgtttggaat atgcaggtca
6001 ccaacatcaa cgggacccct tttgatccaa cagaggatgt cccggctccc ctaggcaccc
6061 cagatttctc tggcaagctc tttggtgtac taagccagag ggaccatgat aatgcctgta
6121 ggagtcatga tgcagtaatt gcaaccaact ctgccaaatt tactccaaaa ttgggcgcta
6181 tacaaattgg cacatgggaa gaagacgatg tgcacatcaa ccaacctact aagtttactc
6241 cagttggctt gtttgaaaat gaaggtttca accagtggac actccccaat tactctggag
6301 ccttaacact taatatgggg ttggcccctc ctgtggcccc caccttccct ggtgaacgaa
6361 tccttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt
6421 gtctcttgca ccaagagtgg atccaacatc tttaccaaga gtcggcccct tcacaatcag
6481 atgtggcatt gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat
6541 tacacaggag tggttacatt acagtggcca atactggtag cagaccgatt gtggtaccag
6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctc gcccccatgg
6661 gaactggaaa tgggcgcaga agggtgcaat aatggctgga gcttttatag cagggcttgc
6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcta atgcaataaa
6781 tcaaaaagta gactttgaaa ataacaagca actacagcag gcttctttca accatgataa
6841 agagatgctg caagctcaag tccaggccac caaacagctg caggctgata tgattgcaat
6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt
6961 taatgcacct atgactcagg tcttagactg gaacgggacc aggcattggg cccccggagc
7021 cacgaaaacc actgctttct ccggtggatt caccaatgct tctcatgccg gaactgtcga
7081 cctgaccaag aagacatcag ccacaccagc ccctacgtct gtttctagac ctagctctat
7141 tgcctctaca gtctccaccc gctcaacctt ggttagcggg tctttcaacc cttcttcttc
7201 agctaggagt tcttctagtg tttcttctca acccacctcc tcctcttctc ggaccagtga
7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacacacagc
7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa
7381 agaggttttg gactcctgga catctgcatt taacacccgc agacaaccgc tattcgctca
7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat gatctttatt ttctttcctt
7501 tgaagattct ttttgtcttt t
//