Typing tool
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Typing tool
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Complete norovirus genomes
| AB039774 | GI.5 | |
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| GI.P12 |
ORF1: 5..5368
ORF2: 5352..6983
ORF3: 6983..7621
LOCUS AB039774 7700 bp RNA linear VRL 05-SEP-2002
DEFINITION Norwalk-like virus genomic RNA, complete genome, isolate:SzUG1.
ACCESSION AB039774
VERSION AB039774.1
KEYWORDS polyprotein; hypothetical protein; capsid; N-terminal, helicase,
VPg, 3Cpro, RdRp.
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T.,
Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y.,
Gojobori,T. and Takeda,N.
TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like
viruses
JOURNAL Virology 299 (2), 225-239 (2002)
PUBMED 12202225
REFERENCE 2 (bases 1 to 7700)
AUTHORS Katayama,K. and Kojima,S.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2000) Kazuhiko Katayama, National Institute of
Infectious Diseases, Department of Virology II; 4-7-1 Gakuen,
Musashi-murayama, Tokyo 208-0011, Japan (E-mail:katayama@nih.go.jp,
Tel:81-42-561-0771, Fax:81-42-561-4729)
FEATURES Location/Qualifiers
source 1..7700
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/isolate="SzUG1"
/db_xref="taxon:95340"
CDS 5..5368
/note="N-terminal, helicase, VPg, 3Cpro, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="BAC11812.1"
/translation="MMMASKDVVAATAASSNNASDNSNTIKDRLLAKLKNIGSNNKPI
KIENTHMALDLIGRGPSPAPPTEPPKQQRDRAPRSVVETQQAMGWVEQPLDQNLPTWE
ELSESEKRDILANNENWFDAGGLAPASIPSTHDRGREEGPLGHQVKWTAASGVDLGVV
DLTTVNGPAWNMCPMPPMDQRNNGPAKEPIIGDMLEFYEGHIYHYAIYIGQGKSIGVH
SPQAAFTIARITIHPIVAWWRVCYTPNAEQRLTYDQLKELENEPWPYAAVTNNCYEFC
CQVMGVQDSWLERRLVTSGRFNHPTQDWSKDTPDFQQDSKLEIVRDAVLAAINGLVSK
PFKDLLGKLKPLNVLNLLSNCDWTFMGVVETVILLMELFGVFWNPPDVSSFIASLLPD
MHLQGPEDLAKDLIPLVLGGIGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFA
VLKKYFFGGDQTEKTLKDIEAAVIDMEVISATAITQLVRDKQSARTYMAILDAEEEKA
RKLSVKHADPHVVSTTNALIARISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTK
AAEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQA
IADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSA
PDVEQTRRTNPGDTGALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNR
LLIQAVALTMERQDEFQMQGPTYDFDADRISAFTSLARANGLGLIDMAKLGKRLRSVD
SIHGLKNALSGYSITPCSIKWQARIYDIESDGTTVKIKENTAAQSQQQHSIDTAVLAL
TRLRAARAAAYASCLQSAITTILQMAGSALVIHRAVKRMFGTHSSTISLEGPTREHQC
RAHVAKANGGGPIGHDDVIDKYGLCETEEEEDTQEVKVCLPTAIQEGKNKGKTKKGRG
RRANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEEMAEVQAGGDGG
IGETEMEIRHRVFYKSKSRKNRQEERHQLGLVTGSDIRKRKPIDWTPPKNEWADDNRE
VDYNEKINFEAPPTLWSRVVKFGSGWGFWVSPTVFITTTHVIPSGAKEFFGEPIDSIA
IHRAGEFTQLRFSKKIRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIAS
MKIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRNNDWVVCGVHAAATKSG
NTVVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSSKTKFWRSTTEPLPPGVYE
PAYLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSVLEQVMDT
PVPWSYADACQSLDKTTSSGHPYHKRKNDDWNGTTFIGELGEQAAHANNMYEQGKSMK
PLYTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPIK
VGMNSIEDGPMIYAEHARFKNHFDADYSAWDSTQNRQIMTESFSIMCRLTATPELASV
VAKDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVI
QSQSYFSFYGDDEIVSTDIDFDPSRLTQVLKEYGLRPTRPDKSEGPIVLRRQIDGLVF
LRRTISKDAAGFQGRLDRGSIERQLWWTRGPNHDDPNETLIPHPQRKVQLISLLGEAS
LHGEKFYRKIAGKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVND
DGV"
CDS 5352..6983
/codon_start=1
/product="capsid"
/protein_id="BAC11813.1"
/translation="MMMASKDATPSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRVILAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLEPLEI
PLEDVRNTLYHNNDSQPTMRLLCMLYTPLRTGGGSGGTDAFVVAGRVLTCPSPDFNFL
FLVPPTVEQKTRPFSVPNIPLQNLSNSRVPSLIQSMVLSNDHAQTVQFQNGRCTTDGH
LLGTTPVSAGQLMKFRGKVTSGSKVLNLTELDGSPFLAFEAPAPAGFPDLGKCDWHVE
MSLYQDNNHADPIVLHAIEPNSSSFVPHLGSVSFKENVNVAGDYVCTIQYTSPPSDPH
NPNADVDFWSIPDYGSNLAEASQLAPVVYPPGFGEAIVYFMSRVPGWNRTNRLNLVPC
LLPQEFIGHFVSEQAPAIGEAALLHYVDPDTNRNLGEFKLYPEGFITCVPNGTGPQQL
PLNGVFVFSSWVSRFYQLKPVGTASLARGRLGIRR"
CDS 6983..7621
/codon_start=1
/product="hypothetical protein"
/protein_id="BAC11814.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLTLQQN
SFKHDKEMIAYQMEMSNNLLAKNLNTRYSLLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPNSSATTLRSGGFMTVPMPFSSKARAPSTSGSVGMTNPNYGDTMSRVSSWVQS
QNSSVRSVSPFHRDALQTVWVTPPGSTSSSSVSSVPRFFNTDRLPLFANRGQ"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcagctact gctgctagca gtaacaatgc
61 tagtgacaat agtaacacca ttaaggatcg cctattggcg aaacttaaga atataggcag
121 taacaacaag cctataaaaa tagaaaacac acacatggcg ctagatctca ttggcagggg
181 gccatctcca gcccccccca ctgagccacc caaacagcaa cgggaccgcg cccccagaag
241 tgtagtggaa acccagcagg ccatgggttg ggtggaacaa ccactggacc agaacctacc
301 aacctgggaa gagttgagcg agtccgagaa acgtgacatc ctggctaata atgaaaactg
361 gtttgatgca ggtggacttg ctccggcatc catccctagc acacatgatc gtggcaggga
421 agagggtcct ctagggcacc aagtgaagtg gactgctgct tctggtgtgg accttggagt
481 tgttgatctc acaacagtta acggcccagc ttggaatatg tgcccaatgc cccctatgga
541 ccaacgcaac aatggccccg cgaaggaacc cataattggt gatatgctgg agttttatga
601 gggccacatt taccactacg ccatatatat tgggcaggga aaatctattg gggtccattc
661 accacaagcc gcattcacca tagccagaat aaccatacac cccattgtgg cttggtggcg
721 agtgtgttac accccaaatg ctgaacaaag attaacctat gaccagctca aggagttgga
781 gaatgagcca tggccatatg cggcagtgac caacaactgc tatgaattct gttgccaggt
841 tatgggtgtg caagattctt ggctggagcg ccggttggtg acatccgggc gctttaacca
901 tccaacccag gattggtcta aagacacacc agattttcag caagatagca aattagaaat
961 tgttagggat gctgtcttag ctgcaatcaa tggccttgtc tcaaaaccat ttaaagatct
1021 ccttggaaag ctcaagcccc tcaacgttct gaacttacta tctaactgtg attggacatt
1081 catgggggtt gttgagactg tgatacttct tatggagctg tttggtgtgt tttggaatcc
1141 acctgatgtg tcaagcttca tcgcatcact tttgcctgac atgcatttac aaggccctga
1201 agatcttgca aaggacctca tacccttggt acttggcggt ataggtcttg ccattgggtt
1261 tacaaaagat aaagtcacaa aggtcatgaa aagtgcagtt gaaggccttc gtgctgcaac
1321 tcagcttggc caatatggtc ttgagatctt cgcagtcctt aagaagtatt tctttggtgg
1381 tgaccaaacg gagaagacac ttaaggacat agaggcagca gtgattgata tggaagttat
1441 ctcagccaca gctataacac aactagtgag agacaaacaa tctgcccgaa catacatggc
1501 catcctagac gctgaggagg agaaagctag aaagctctct gttaaacatg cagaccctca
1561 tgtggtgtcc acaaccaatg ccctcattgc acgcatatca ttggccagat cagcattggc
1621 taaagcacag gccgagatga ctaacagggt taaacctgtg gtcattatga tgtgtggtcc
1681 accaggcatt ggtaagacga aggccgctga gtatctagcc aagcgcctgg ccaatgagat
1741 tagaccaggt gggaaggttg gtttggtgcc gcgtgaagca gttgatcatt gggatggtta
1801 tcatggtgaa gaagttatgt tgtgggatga ttatgggatg tcaaagatag ctgatgactg
1861 caataagtta caggccattg ctgacacagc acctttaacc ttaaattgtg acaggattga
1921 aaagaaggga ctccagtttg tgtctgatgc catagtcata accactaacg cccctggccc
1981 agcacctgtc gattttgtta acctgggacc ggtgtgtcgg cgcgtggact tcctcgttta
2041 ttgttcagct ccagacgtgg aacagacccg ccgcaccaat ccaggtgaca ctggtgccct
2101 caaggattgt ttcaaaagcg atttctcaca cctaaagatg gaattggcac cacaaggtgg
2161 ttttgacaac caaggcaaca caccatttgg gaagggcact atgcgcccaa ccacattgaa
2221 cagactgctg atacaggctg tggcacttac catggagagg caggatgaat tccaaatgca
2281 aggccccaca tacgactttg acgctgaccg gatttcagcc ttcactagtc tagctcgtgc
2341 caatgggctg ggccttatag atatggctaa actagggaaa agactaagga gtgtggactc
2401 tattcatggc cttaagaatg cactcagtgg ttactctata acaccatgta gcataaaatg
2461 gcaagctagg atctatgaca ttgaatctga tggtacaaca gtcaaaataa aagaaaacac
2521 cgcagctcaa tcccagcaac aacattcaat agacacagca gtcctggcat tgacccgctt
2581 aagagcggca agagcagcag cttatgcctc ttgtttgcaa agcgcaatca ccactatcct
2641 tcaaatggca ggttcggccc tggtcataca tcgggctgta aaacgaatgt ttggcacgca
2701 ttcgagcacc atctcattag agggccccac tagagaacac caatgtagag cccacgtcgc
2761 caaggccaat ggaggtggcc ctatagggca cgatgatgtc atcgataaat atggcctatg
2821 tgagactgag gaggaagagg acactcagga ggttaaagtt tgtctgccca cggctataca
2881 agaaggtaag aataaaggga aaaccaaaaa gggaagaggt aggcgtgcca attataatgc
2941 cttctcaaga agaggcctca gtgatgaaga gtatgaggag tacaagaaga tcagagaaga
3001 gaagaatggc aactacagca tacaggagta ccttgaggac aggcaacgct atgaagaaga
3061 aatggctgaa gtccaggctg gtggggatgg tggtattgga gagactgaga tggagatacg
3121 acatcgcgtg ttctataagt ctaaatccag gaagaaccgt caagaagaac gccaccagtt
3181 aggccttgtg actggcagtg acattagaaa gaggaaacca attgattgga ccccccctaa
3241 aaatgaatgg gctgatgaca acagagaagt tgattacaat gagaagatca attttgaggc
3301 ccccccaaca ttatggagcc gtgttgtcaa atttggctca ggttggggct tttgggttag
3361 ccctacagtg tttatcacaa ccacccatgt catcccatca ggagctaaag aattctttgg
3421 cgagcccata gactcaatcg ccatccaccg ggcaggagaa ttcacccaat taaggttttc
3481 aaagaagatc cgccctgatc tgacggggat ggtcttagaa gaagggtgcc cagaaggagt
3541 ggtctgttcc atactcatca aaagggactc tggtgagttg ctccccctgg ctgttcgtat
3601 gggggccatt gcttcaatga agatacaggg gcgactagtc catggtcaat ctggtatgtt
3661 gctcactggg gccaatgcta aaggtatgga cctgggtacc atcccaggtg attgtggtgc
3721 cccttatgtc tacaaaagaa ataatgactg ggtagtctgt ggtgtacatg ccgcagccac
3781 aaagtctggc aacacagtgg tgtgtgcggt gcaagctggt gagggtgaga caactttgga
3841 aggtggtgat aaaggccact acgctggaca tgaaataata aaacacagca aaggaccagc
3901 tctctcgagc aagactaagt tctggaggtc tacaactgaa ccattaccac caggcgtgta
3961 cgagccagcc taccttggag gtcgtgaccc tagggtgaaa ggcgggccgt cactgcaaca
4021 ggttctaaga gaccaactga agccattcgc tgaaccacgg gggcgcatgc cagaacctgg
4081 attgttggaa gcagctgttg aaactgtgac atctgtctta gaacaagtca tggacacacc
4141 agtgccctgg tcatatgctg atgcttgtca gtctcttgat aaaaccacca gttctggcca
4201 tccctatcac aagaggaaga atgatgattg gaatggaacc accttcattg gggagttggg
4261 tgagcaggct gcccatgcta acaacatgta tgagcagggg aaatcaatga agcctctcta
4321 cactgctgca ctcaaagatg aattagttaa gcctgaaaaa gtctaccaga agatcaagaa
4381 gcgcctccta tggggggctg acctgtctac agtcatccga gcggccagag ctttcggtcc
4441 attctgtgat gccataaagc cacatgtaat aaaattgccc atcaaagttg gcatgaactc
4501 aattgaagat ggcccaatga tatatgctga gcatgcccga ttcaaaaatc actttgatgc
4561 tgattattct gcctgggatt caacacaaaa cagacaaatc atgacagagt ctttttcaat
4621 aatgtgccgc ctgacagcaa caccagaatt ggcttcggtg gtcgccaagg atctccttgc
4681 accttctgag atggatgttg gggactatat aataagagtc aaagaaggat taccatcagg
4741 attcccttgt acttctcaag tcaatagcat aaaccactgg ctcatcactc tctgtgcact
4801 ctctgaggtc acgggccttt ccccagatgt catacagtca caatcttact tttcctttta
4861 tggggatgac gagatagtat caactgatat tgatttcgac ccatcccgct taacccaggt
4921 gcttaaagag tatggtcttc ggcccacacg ccctgacaaa agtgaaggac caatagtgtt
4981 gagaaggcag atcgatggct tggttttcct gagaagaaca atatcaaagg atgcagctgg
5041 ttttcaaggc aggttggaca ggggctccat cgagagacaa ctgtggtgga cccgcggccc
5101 aaatcatgat gacccaaatg aaaccctgat accccaccca caaagaaagg ttcagcttat
5161 atctctgctt ggtgaggcct cactacatgg ggaaaagttt tacaggaaga tagctggtaa
5221 ggttatccag gaaattaaga ctggtggtct tgaaatgtac gtgccgggtt ggcaggcaat
5281 gttccgctgg atgcgcttcc atgatctcgg gttgtggaca ggagatcgca atctcctgcc
5341 cgaattcgta aatgatgatg gcgtctaagg acgctacacc aagcgcagat ggcgcgaacg
5401 gcgccggtca gctcgtgccg gaggttaata atgctgaacc actgcctctt gatcctgtgg
5461 ctggggcttc tactgcctta gctactgctg gtcaagttaa tatgattgat ccttggattt
5521 tcaataactt tgtccaagcc cctcagggtg aatttacaat ctcccctaat aatacccccg
5581 gtgatatatt atttgatttg caattgggac ctcacctcaa tcccttcctt gcccatttgt
5641 cacaaatgta taatggttgg gttggtaaca tgcgagtcag ggtcatcctg gcaggtaacg
5701 catttaccgc cggtaaagtg ataatttgct gtgtcccccc tggcttccaa tctaggaccc
5761 tatcaattgc tcaggccacc ctctttcctc atgtgattgc tgatgttcgc acattggaac
5821 cacttgaaat cccattggag gatgttagaa atacactgta ccataacaat gacagccagc
5881 cgacaatgcg tttattgtgc atgctgtaca cgccacttcg cactggtggt ggttctggtg
5941 gcacagacgc gtttgtcgtc gcagggagag ttttaacttg cccaagtcct gacttcaact
6001 ttctcttcct ggtccccccg actgtggaac aaaagacacg cccttttagt gtacccaata
6061 tcccactcca gaatctttcc aactcccgag ttcctagtct gatccaaagc atggtcctct
6121 ctaatgacca tgcacaaaca gtccaattcc agaatggcag gtgtactact gacggtcacc
6181 tgctggggac cacccccgtt tctgctggcc agctcatgaa attcagaggt aaggtaactt
6241 caggttcaaa agtgctaaac ctaacagaac tagatggttc accatttcta gcctttgagg
6301 ccccagcccc tgctggattc cccgaccttg gaaagtgtga ttggcatgtc gagatgagtc
6361 tttatcagga taacaatcat gcagacccta ttgtgctgca tgccattgaa cccaattcat
6421 cttcctttgt tccgcacctt ggcagtgttt cctttaaaga aaatgttaat gtagctggtg
6481 attatgtttg tactatacaa tatacttcac ccccctctga tccccataac cctaatgctg
6541 atgttgattt ctggtctatc cctgattatg gttccaactt ggctgaagca tcacagcttg
6601 ccccagttgt ctatccccct ggttttggtg aggctattgt ctatttcatg tcacgcgtcc
6661 ccggctggaa taggaccaac aggctcaatc tggtcccttg cctgttgcct caagagttca
6721 ttggacattt cgtcagtgaa caagcccccg caattggtga ggccgccctc ttacattatg
6781 ttgatccaga taccaatcgg aacctgggtg aatttaaatt gtatcctgag ggtttcatca
6841 cttgtgtccc taatggcact ggccctcagc agcttcccct aaatggtgtc tttgtctttt
6901 cttcctgggt gtcaagattt tatcaactca agcctgtggg aacggcttct ttagccagag
6961 gtaggcttgg catcaggaga taatggccca agctataatt ggtgctattg cagcctccgc
7021 tgctggcagt gcccttggag ctggtatcca agccggcgca gaagcagcac ttcaaagtca
7081 aaggtatcag caagatttga ccttacagca aaattcattt aaacatgata aagagatgat
7141 tgcctatcaa atggaaatgt ccaataattt gcttgctaag aatcttaata ctcgctattc
7201 attgctccag gccggcggcc tgtctagtgc tgatgctgct agggcggtcg ctggcgctcc
7261 tgtgactcgc atcgttgatt ggaatggcac taggattgca gccccgaatt catcagcaac
7321 aaccttaaga tcagggggct tcatgactgt gccaatgcca ttcagcagca aggctagggc
7381 accaagcact tcagggtctg ttggcatgac taatccaaat tacggtgaca ctatgtcccg
7441 tgtctcctct tgggtacaat cacaaaattc ttcagtaaga agtgtttccc cttttcaccg
7501 tgatgccctt caaactgtat gggtaacacc accgggttca acttcttctt catctgtatc
7561 ttctgtacct agatttttca atactgatag attgcctctt ttcgcaaata gaggccaata
7621 atgttgtaat aagaatgtgg gcatcttatt cagaattaga taattttaat tggaatttaa
7681 taatttggat aattgatgtt
//