Typing tool

Norovirus genogroup II capsid (VP1)   GenBank
1 GII.1
 (5)
Amsterdam3_KJ194507  
2 Ascension208_JN797508  
3 Dillingen391_AF425767  
4 Hawaii_U07611  
5 Picton_AY919139  
6 GII.2
 (12)
E3_AY682552  
7 HenrytonSP17_MF405169  
8 KL109_JX846925  
9 MK04_DQ456824  
10 Melksham_X81879  
11 OC97007_AB089882  
12 OsakaNI_DQ366347  
13 PontdeRoide673_AY682549  
14 SaitamaE24_KF730316  
15 SantaRosa1764_KY865306  
16 SnowMountain_AY134748  
17 Vaals_AB281090  
18 GII.3
 (13)
109_MH218579  
19 Amsterdam1_KJ194500  
20 Arg320_AF190817  
21 HK71_JX846924  
22 Herzberg385_AF539439  
23 IPH2172-09VG4_JF697282  
24 MX_U22498  
25 Milwaukee009_JN565063  
26 NSW730O_KT239614  
27 RotterdamE1300327_MF140689  
28 RotterdamP1D0_AB385626  
29 SN2000JA_AB190457  
30 Toronto_U02030  
31 GII.4
 (2)
CHDC2094_FJ537135  
32 CHDC5191_FJ537134  
33 GII.4 Asia
 (2)
Asia_AB220921  
34 Sakai04179_AB220922  
35 GII.4
Den Haag
 (3)
DenHaag_EF126965  
36 Minerva_EU078417  
37 Shimane2_AB541348  
38 GII.4 Farmington Hills
 (2)
FarmingtonHills_AY502023  
39 Langen1061_AY485642  
40 GII.4 Hong Kong CUHK-NS-2200_MN400355  
41 GII.4
Hunter
 (3)
Chiba04-1008_AB220926  
42 Hunter504D04O_DQ078814  
43 Hunter_AY883096  
44 GII.4
New Orleans
 (4)
Hokkaido3_AB933767  
45 NSW001P_GQ845367  
46 NewOrleans_2010-SP-0870_KX353972  
47 NewOrleans_GU445325  
48 GII.4 Osaka
 (2)
Osaka_AB434770  
49 PunePC51_EU921388  
50 GII.4
Sydney
 (4)
OH16002_LC153121  
51 Sydney_JX459908  
52 WI-467121_KX354134  
53 WoononaNSW3309_JX459907  
54 GII.4
US95-96
 (3)
Saitama_AB112306  
55 US95-96_AF414424  
56 US95-96_AJ004864  
57 GII.4 Yerseke
 (2)
Isumi060936_AB294790  
58 Yerseke_EF126963  
59 GII.5
 (4)
Hillingdon_AJ277607  
60 S63_AY682550  
61 SaitamaT49_KJ196277  
62 SaitamaT52_KJ196288  
63 GII.6
 (12)
14-55_KX158281  
64 30443_KM198534  
65 Belgium-4_MN248516  
66 GZ2010-L96Guangzhou_JX989075  
67 Miami292_AF414410  
68 S9c_KC576910  
69 SaitamaU16_AB039778  
70 SaitamaU4_AB039777  
71 Seacroft_AJ277620  
72 Shizuoka8913_HM633213  
73 TCHE99-13646_GU930737  
74 Tokyo_AB684664  
75 GII.7
 (5)
236_MH218692  
76 CHDC3936_JX846926  
77 Gwynedd273_AF414409  
78 Leeds_AJ277608  
79 TAKAsanKimchi_KJ196295  
80 GII.8
 (2)
Amsterdam9818_AF195848  
81 SaitamaU25_AB039780  
82 GII.9
 (2)
GoulburnValleyG5175C_DQ379715  
83 VA97207_AY038599  
84 GII.10
 (2)
Erfurt546_AF427118  
85 Mc37_AY237415  
86 GII.11
 (2)
Sw43_AB126320  
87 Sw918_AB074893  
88 GII.12
 (5)
No35-Saitama-99-1_LC342059  
89 PunePC24_EU921353  
90 SaitamaU1_AB039775  
91 StGeorge_GQ845370  
92 Wortley_AJ277618  
93 GII.13
 (5)
Empangeni10403_KR904229  
94 Fayetteville_AY113106  
95 GoulburnValleyG5175B_DQ379714  
96 PunePC25_EU921354  
97 SaitamaT80_KJ196276  
98 GII.14
 (6)
Beijing55028_GQ856465  
99 M7_AY130761  
100 Maizuru8533_GU017903  
101 PV-Voelk0017_KM289171  
102 Saga8610_GU594162  
103 SendaiYG99_KJ196278  
104 GII.16
 (3)
Hiram_AY502006  
105 Neustrelitz260_AY772730  
106 Tiffin_AY502010  
107 GII.17
 (8)
Arg13099_KX061540  
108 Briancon870_EF529741  
109 CS-E1_AY502009  
110 CUHK-NS-682_KT589391  
111 Katrina-17_DQ438972  
112 Kawasaki308_LC037415  
113 Kawasaki323_AB983218  
114 SaitamaT87_KJ196286  
115 GII.18
 (2)
OH-QW101_AY823304  
116 OH-QW125_AY823305  
117 GII.19 OH-QW170_AY823306  
118 GII.20
 (3)
Leverkusen267_EU424333  
119 Luckewalde591_EU373815  
120 OC071182007_AB542917  
121 GII.21
 (2)
IF1998_AY675554  
122 KawasakiYO284_KJ196284  
123 GII.22
 (2)
Dhaka1940_MG495082  
124 Yuri_AB083780  
125 GII.23
 (2)
Loreto1847_KT290889  
126 Loreto6422_MG495080  
127 GII.24
 (2)
EdenPrairie5457_MG495084  
128 Loreto1972_KY225989  
129 GII.25
 (2)
Beijing53931_GQ856469  
130 Dhaka1928_MG495083  
131 GII.26
 (2)
Leipzig07788a_MF352142  
132 Leon4509_KU306738  
133 GII.27
 (2)
Arg15813_MK733205  
134 Loreto0959_MG495077  
135 GII.ancestral Tokyo68-4_AB684728  
136 GII.NA1 Loreto1257_MG495079  
137 GII.NA2 PNV06929_MG706448  
Norovirus genogroup II capsid phylogenetic tree

 
The tree was computed from amino acid sequence alignment using maximum likelihood (ML) method with PhyML software and was plotted and edited in FigTree graphical viewer.

Page last reviewed: October 26, 2022