Human calicivirus
Typing tool

Norovirus genogroup II capsid (VP1)   GenBank
1 GII.1
 (5)		 Amsterdam3_KJ194507  
2 Ascension208_JN797508  
3 Dillingen391_AF425767  
4 Hawaii_U07611  
5 Picton_AY919139  
6 GII.2
 (12)		 E3_AY682552  
7 HenrytonSP17_MF405169  
8 KL109_JX846925  
9 MK04_DQ456824  
10 Melksham_X81879  
11 OC97007_AB089882  
12 OsakaNI_DQ366347  
13 PontdeRoide673_AY682549  
14 SaitamaE24_KF730316  
15 SantaRosa1764_KY865306  
16 SnowMountain_AY134748  
17 Vaals_AB281090  
18 GII.3
 (13)		 109_MH218579  
19 Amsterdam1_KJ194500  
20 Arg320_AF190817  
21 HK71_JX846924  
22 Herzberg385_AF539439  
23 IPH2172-09VG4_JF697282  
24 MX_U22498  
25 Milwaukee009_JN565063  
26 NSW730O_KT239614  
27 RotterdamE1300327_MF140689  
28 RotterdamP1D0_AB385626  
29 SN2000JA_AB190457  
30 Toronto_U02030  
31 GII.4
 (7)		 Allegany0230_MT028542  
32 Botswana1026_MW019618  
33 CA-RGDS-11182_OR700741  
34 CHDC2094_FJ537135  
35 CHDC5191_FJ537134  
36 MI_2021-SP-0021_Caliciviridae  
37 WI_2021-SP-0187_Caliciviridae  
38 GII.4 Asia
 (2)		 Asia_AB220921  
39 Sakai04179_AB220922  
40 GII.4
Den Haag
 (3)		 DenHaag_EF126965  
41 Minerva_EU078417  
42 Shimane2_AB541348  
43 GII.4 Farmington Hills
 (2)		 FarmingtonHills_AY502023  
44 Langen1061_AY485642  
45 GII.4 Hong Kong CUHK-NS-2200_MN400355  
46 GII.4
Hunter
 (3)		 Chiba04-1008_AB220926  
47 Hunter504D04O_DQ078814  
48 Hunter_AY883096  
49 GII.4
New Orleans
 (4)		 Hokkaido3_AB933767  
50 NSW001P_GQ845367  
51 NewOrleans_2010-SP-0870_KX353972  
52 NewOrleans_GU445325  
53 GII.4 Osaka
 (2)		 Osaka_AB434770  
54 PunePC51_EU921388  
55 GII.4 San Francisco
 (2)		 SanFrancisco_SA_OR262344  
56 SanFrancisco_USA_OR262322  
57 GII.4
Sydney
 (18)		 B7265_MW521126  
58 CA_2022-SP-0063_Caliciviridae  
59 CA_2022-SP-0083_Caliciviridae  
60 CA_2022-SP-0179_Caliciviridae  
61 FL_2016-SP-0021_Caliciviridae  
62 LAC_2021-SP-0014_Caliciviridae  
63 MI_2023-SP-0095_Caliciviridae  
64 MN_2019-SP-0118_Caliciviridae  
65 OH16002_LC153121  
66 OH_2019-SP-0181_Caliciviridae  
67 OH_2020-SP-0059_Caliciviridae  
68 OR_2023-SP-0055_Caliciviridae  
69 Sydney2105Y1677_OL336352  
70 Sydney_JX459908  
71 WI-467121_KX354134  
72 WI_2017-SP-0298_Caliciviridae  
73 WI_2018-SP-0212_Caliciviridae  
74 WoononaNSW3309_JX459907  
75 GII.4
US95-96
 (3)		 Saitama_AB112306  
76 US95-96_AF414424  
77 US95-96_AJ004864  
78 GII.4 Yerseke
 (2)		 Isumi060936_AB294790  
79 Yerseke_EF126963  
80 GII.5
 (4)		 Hillingdon_AJ277607  
81 S63_AY682550  
82 SaitamaT49_KJ196277  
83 SaitamaT52_KJ196288  
84 GII.6
 (12)		 14-55_KX158281  
85 30443_KM198534  
86 Belgium-4_MN248516  
87 GZ2010-L96Guangzhou_JX989075  
88 Miami292_AF414410  
89 S9c_KC576910  
90 SaitamaU16_AB039778  
91 SaitamaU4_AB039777  
92 Seacroft_AJ277620  
93 Shizuoka8913_HM633213  
94 TCHE99-13646_GU930737  
95 Tokyo_AB684664  
96 GII.7
 (5)		 236_MH218692  
97 CHDC3936_JX846926  
98 Gwynedd273_AF414409  
99 Leeds_AJ277608  
100 TAKAsanKimchi_KJ196295  
101 GII.8
 (2)		 Amsterdam9818_AF195848  
102 SaitamaU25_AB039780  
103 GII.9
 (2)		 GoulburnValleyG5175C_DQ379715  
104 VA97207_AY038599  
105 GII.10
 (2)		 Erfurt546_AF427118  
106 Mc37_AY237415  
107 GII.11
 (2)		 Sw43_AB126320  
108 Sw918_AB074893  
109 GII.12
 (5)		 No35-Saitama-99-1_LC342059  
110 PunePC24_EU921353  
111 SaitamaU1_AB039775  
112 StGeorge_GQ845370  
113 Wortley_AJ277618  
114 GII.13
 (5)		 Empangeni10403_KR904229  
115 Fayetteville_AY113106  
116 GoulburnValleyG5175B_DQ379714  
117 PunePC25_EU921354  
118 SaitamaT80_KJ196276  
119 GII.14
 (6)		 Beijing55028_GQ856465  
120 M7_AY130761  
121 Maizuru8533_GU017903  
122 PV-Voelk0017_KM289171  
123 Saga8610_GU594162  
124 SendaiYG99_KJ196278  
125 GII.16
 (3)		 Hiram_AY502006  
126 Neustrelitz260_AY772730  
127 Tiffin_AY502010  
128 GII.17
 (8)		 Arg13099_KX061540  
129 Briancon870_EF529741  
130 CS-E1_AY502009  
131 CUHK-NS-682_KT589391  
132 Katrina-17_DQ438972  
133 Kawasaki308_LC037415  
134 Kawasaki323_AB983218  
135 SaitamaT87_KJ196286  
136 GII.18
 (2)		 OH-QW101_AY823304  
137 OH-QW125_AY823305  
138 GII.19 OH-QW170_AY823306  
139 GII.20
 (3)		 Leverkusen267_EU424333  
140 Luckewalde591_EU373815  
141 OC071182007_AB542917  
142 GII.21
 (2)		 IF1998_AY675554  
143 KawasakiYO284_KJ196284  
144 GII.22
 (2)		 Dhaka1940_MG495082  
145 Yuri_AB083780  
146 GII.23
 (2)		 Loreto1847_KT290889  
147 Loreto6422_MG495080  
148 GII.24
 (2)		 EdenPrairie5457_MG495084  
149 Loreto1972_KY225989  
150 GII.25
 (2)		 Beijing53931_GQ856469  
151 Dhaka1928_MG495083  
152 GII.26
 (2)		 Leipzig07788a_MF352142  
153 Leon4509_KU306738  
154 GII.27
 (2)		 Arg15813_MK733205  
155 Loreto0959_MG495077  
156 GII.ancestral Tokyo68-4_AB684728  
157 GII.NA1 Loreto1257_MG495079  
158 GII.NA2 PNV06929_MG706448  
Norovirus genogroup II capsid phylogenetic tree
 
The tree was computed from amino acid sequence alignment using maximum likelihood (ML) method with PhyML software and was plotted and edited in FigTree graphical viewer.

Last updated: March 26, 2024