Human calicivirus
Typing tool

Norovirus genogroup II capsid (VP1)   GenBank
1 GII.1
 (5)		 Amsterdam3_KJ194507  
2 Ascension208_JN797508  
3 Dillingen391_AF425767  
4 Hawaii_U07611  
5 Picton_AY919139  
6 GII.2
 (12)		 E3_AY682552  
7 HenrytonSP17_MF405169  
8 KL109_JX846925  
9 MK04_DQ456824  
10 Melksham_X81879  
11 OC97007_AB089882  
12 OsakaNI_DQ366347  
13 PontdeRoide673_AY682549  
14 SaitamaE24_KF730316  
15 SantaRosa1764_KY865306  
16 SnowMountain_AY134748  
17 Vaals_AB281090  
18 GII.3
 (13)		 109_MH218579  
19 Amsterdam1_KJ194500  
20 Arg320_AF190817  
21 HK71_JX846924  
22 Herzberg385_AF539439  
23 IPH2172-09VG4_JF697282  
24 MX_U22498  
25 Milwaukee009_JN565063  
26 NSW730O_KT239614  
27 RotterdamE1300327_MF140689  
28 RotterdamP1D0_AB385626  
29 SN2000JA_AB190457  
30 Toronto_U02030  
31 GII.4
 (2)		 CHDC2094_FJ537135  
32 CHDC5191_FJ537134  
33 GII.4
Allegany
 (4)		 Allegany230_MT028542  
34 Botswana_1137_MW019958  
35 Frederick0013_PQ213438  
36 KLFNOV005_MW559992  
37 GII.4 Apeldoorn
 (2)		 Apeldoorn317_AB445395  
38 TurramurraNSW892U_HM748973  
39 GII.4 Asia
 (2)		 Asia_AB220921  
40 Sakai04179_AB220922  
41 GII.4 Bristol Bristol_X76716  
42 GII.4
Den Haag
 (3)		 DenHaag_EF126965  
43 Minerva_EU078417  
44 Shimane2_AB541348  
45 GII.4 Farmington Hills
 (2)		 FarmingtonHills_AY502023  
46 Langen1061_AY485642  
47 GII.4 Henry Henry_FJ411170  
48 GII.4 Hong Kong CUHK-NS-2200_MN400355  
49 GII.4
Hunter
 (3)		 Chiba04-1008_AB220926  
50 Hunter504D04O_DQ078814  
51 Hunter_AY883096  
52 GII.4
New Orleans
 (4)		 Hokkaido3_AB933767  
53 NSW001P_GQ845367  
54 NewOrleans_2010-SP-0870_KX353972  
55 NewOrleans_GU445325  
56 GII.4 Osaka
 (2)		 Osaka_AB434770  
57 PunePC51_EU921388  
58 GII.4 Richmond Richmond_EU078406  
59 GII.4 San Francisco
 (2)		 SanFrancisco_SA_OR262344  
60 SanFrancisco_USA_OR262322  
61 GII.4
Sydney
 (18)		 B7265_MW521126  
62 Broward1056_2015_P31_MK762630  
63 EauClaire0042_2018_P4_PQ207921  
64 Franklin0027_2019_P16_PQ195892  
65 Grant0015_2018_P16_MK752934  
66 Huron0309_2020_P31_PQ195913  
67 Lincoln0055_2023_P16_PQ209098  
68 LosAngeles0043_2021_P16_PQ218566  
69 Maricopa0179_2022_P16_PQ196561  
70 Michigan0095_2023_P16_PQ208322  
71 Milwaukee0499_2023_P16_PQ207934  
72 Minnesota0019_2019_P4_PQ214833  
73 OH16002_LC153121  
74 SP-0251_121714_WI_KX354134  
75 SanLuisObispo0063_2022_P16_PQ196529  
76 Sydney2105Y1677_OL336352  
77 Sydney_JX459908  
78 WoononaNSW3309_JX459907  
79 GII.4
US95-96
 (3)		 Saitama_AB112306  
80 US95-96_AF414424  
81 US95-96_AJ004864  
82 GII.4 Wichita
 (2)		 RedWillow0059_PQ218943  
83 Wichita0031_PQ207944  
84 GII.4 Yerseke
 (2)		 Isumi060936_AB294790  
85 Yerseke_EF126963  
86 GII.5
 (6)		 Hillingdon_AJ277607  
87 Hokkaido133_AB212306  
88 MOH_AF397156  
89 S63_AY682550  
90 SaitamaT49_KJ196277  
91 SaitamaT52_KJ196288  
92 GII.6
 (14)		 14-55_KX158281  
93 30443_KM198534  
94 Belgium-4_MN248516  
95 GZ2010-L96Guangzhou_JX989075  
96 Mahoning0050_PV174245  
97 Miami292_AF414410  
98 NewYork0007_PV174244  
99 S9c_KC576910  
100 SaitamaU16_AB039778  
101 SaitamaU4_AB039777  
102 Seacroft_AJ277620  
103 Shizuoka8913_HM633213  
104 TCHE99-13646_GU930737  
105 Tokyo_AB684664  
106 GII.7
 (6)		 236_MH218692  
107 CHDC3936_JX846926  
108 Gwynedd273_AF414409  
109 Leeds_AJ277608  
110 OsakaF140_AB258331  
111 TAKAsanKimchi_KJ196295  
112 GII.8
 (2)		 Amsterdam9818_AF195848  
113 SaitamaU25_AB039780  
114 GII.9
 (2)		 GoulburnValleyG5175C_DQ379715  
115 VA97207_AY038599  
116 GII.10
 (3)		 Erfurt546_AF427118  
117 Mc37_AY237415  
118 Vietnam026_AF504671  
119 GII.11
 (2)		 Sw43_AB126320  
120 Sw918_AB074893  
121 GII.12
 (5)		 No35-Saitama-99-1_LC342059  
122 PunePC24_EU921353  
123 SaitamaU1_AB039775  
124 StGeorge_GQ845370  
125 Wortley_AJ277618  
126 GII.13
 (5)		 Empangeni10403_KR904229  
127 Fayetteville_AY113106  
128 GoulburnValleyG5175B_DQ379714  
129 PunePC25_EU921354  
130 SaitamaT80_KJ196276  
131 GII.14
 (6)		 Beijing55028_GQ856465  
132 M7_AY130761  
133 Maizuru8533_GU017903  
134 PV-Voelk0017_KM289171  
135 Saga8610_GU594162  
136 SendaiYG99_KJ196278  
137 GII.16
 (3)		 Hiram_AY502006  
138 Neustrelitz260_AY772730  
139 Tiffin_AY502010  
140 GII.17
 (13)		 13BH1_KJ156329  
141 3351_MK789431  
142 446222_OP805362  
143 Arg13099_KX061540  
144 Briancon870_EF529741  
145 CA-RGDS-1180_OR685283  
146 CA_OP689689  
147 CS-E1_AY502009  
148 CUHK-NS-682_KT589391  
149 Katrina-17_DQ438972  
150 Kawasaki308_LC037415  
151 Kawasaki323_AB983218  
152 SaitamaT87_KJ196286  
153 GII.18
 (2)		 OH-QW101_AY823304  
154 OH-QW125_AY823305  
155 GII.19 OH-QW170_AY823306  
156 GII.20
 (4)		 Gothenburg_EU275779  
157 Leverkusen267_EU424333  
158 Luckewalde591_EU373815  
159 OC071182007_AB542917  
160 GII.21
 (3)		 IF1998_AY675554  
161 KawasakiYO284_KJ196284  
162 Salisbury150_JN899245  
163 GII.22
 (3)		 Dhaka1940_MG495082  
164 MinatoN16_AB233471  
165 Yuri_AB083780  
166 GII.23
 (3)		 Loreto1847_KT290889  
167 Loreto6422_MG495080  
168 Quininde1906_KR232647  
169 GII.24
 (2)		 EdenPrairie5457_MG495084  
170 Loreto1972_KY225989  
171 GII.25
 (3)		 Beijing53931_GQ856469  
172 Dhaka1928_MG495083  
173 Seoul0922_HM635128  
174 GII.26
 (2)		 Leipzig07788a_MF352142  
175 Leon4509_KU306738  
176 GII.27
 (3)		 Arg15813_MK733205  
177 Loreto0959_MG495077  
178 Loreto1041_MG495078  
179 GII.ancestral Tokyo68-4_AB684728  
180 GII.NA1 Loreto1257_MG495079  
181 GII.NA2 PNV06929_MG706448  
Norovirus genogroup II capsid phylogenetic tree
 
The tree was computed from amino acid sequence alignment using maximum likelihood (ML) method with PhyML software and was plotted and edited in FigTree graphical viewer.

Last updated: June 27, 2025