Typing tool
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Typing tool
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Complete norovirus genomes
| PZ682715 | GII.17 | |
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| GII.P17 |
ORF1: 1..5109
ORF2: 5090..6700
ORF3: 6700..7479
LOCUS PZ682715 7550 bp RNA linear VRL 18-JUL-2026
DEFINITION Norovirus GII isolate Hu/GII.17[P17]/TX0024/2026/USA nonstructural
polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION PZ682715
VERSION PZ682715.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Gehlbach,D., Sciulli,M., Montmayeur,A.M., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TX0024/2026/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: TX"
/collection_date="23-Apr-2026"
/note="genotype: GII.17[P17]"
gene 1..5109
/gene="ORF1"
CDS 1..5109
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YFW08908.1"
/translation="MKMASNDASAAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGAR
SKQPPPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPTVTYKVGEGVSGLPDLTTVA
QPDAQNTAYSVPPLSQREVGAAKEPLPGSILEMWDGEIYHYGLYVERGYVLGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDV
IGKLKPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQG
PEDLAMELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAIVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARK
LSSKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYKPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTMRVGNQLKSV
KTMDELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALH
HLRSARIRYYVKCFQEAIYSVLQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDK
GGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRNVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..999
/gene="ORF1"
/product="p48"
mat_peptide 1000..2097
/gene="ORF1"
/product="NTPase"
mat_peptide 2098..2634
/gene="ORF1"
/product="p22"
mat_peptide 2635..3033
/gene="ORF1"
/product="VPg"
mat_peptide 3034..3576
/gene="ORF1"
/product="Pro"
mat_peptide 3577..5106
/gene="ORF1"
/product="RdRp"
gene 5090..6700
/gene="ORF2"
CDS 5090..6700
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YFW08909.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNSSGDDAFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAVSDTPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNNDDAGSTRSHEVVISTNSPKFVPKLGSVNFKTNTDDFQWQPTRFTPVGINDDG
DQPFRQWELPNYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCLLP
QEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPAN
GYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6700..7479
/gene="ORF3"
CDS 6700..7479
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YFW08910.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSIPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRNLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac
61 aatgtaaaat cttcaagtga cagcttgttt tctaacatga ctgttacttt taagaaagcc
121 ctcggggcgc ggtctaagca gccgcccccg ggagaaacaa aacaaacact aagaccacca
181 aggccgccga caccggaatt ggtgaagaag atacccccac ccccccccaa tggcgaggat
241 gaaccaacgg taacgtataa ggtgggagaa ggtgtgtctg ggctgcccga cttaacaacc
301 gtggcacaac ctgacgcaca gaacacagcc tatagtgtcc ccccacttag ccagagagag
361 gtcggcgcag ctaaagaacc gttgcctggc tccattctgg aaatgtggga tggtgagatc
421 taccactatg ggctgtatgt tgagcggggg tatgtgctgg gagtgcacaa accacctgct
481 gcaataagcc ttgccaaaat tgaattaaca ccgctgtctc tctactggag agtggtctac
541 actccccagt acttgatagc tccagagacc ctcaagaatt taaatggaga gactttccca
601 tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggttctaga cctcaacgac
661 tcctggctta gcagaagaat ggtccaaaga acaactggat tcttcagacc gtaccaggac
721 tggaacagaa aacccttacc aaccatggat gaaccaaaaa tcaagaaggc cgcgaatgct
781 gttctgtgtg ccctctcctc actcttcact aggcccatca aagatgtcat tggaaagctt
841 aaaccactaa acattatgaa catactggca acttgtgatt ggacttttgc gggcatagtg
901 gaatccatga tccttcttgc tgaactcttt ggggtgttct ggacgccccc agatgtgtct
961 gcaataattg ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccatg
1021 gaacttgtgc ccgtggtaat gggaggaata ggtttggtgt taggattcac caaggaaaag
1081 atcggcaaga tgctttcatc agctgcaacc acactcaggg cctgtaagga tctaggatct
1141 tatggattgg agatactcaa actggttatg aagtggttct tccccaagaa ggaggaggcc
1201 aacgagttag ccatagtgag ggccattgag gatgcagttc tggatttgga ggcaatagaa
1261 aacaaccaca tgaccactct ccttaaggac aaagacgccc tggccacata catgaggact
1321 cttgacttgg aagaagaaaa agcaaggaaa ctatcttcca aatcggcgtc acctgacatc
1381 gtgggcacag taaacgcact attggcaaga atagcagccg ccaggtcact ggtccacaag
1441 gctaaggagg aactctcgag cagacagaga cctgttgttg taatgatatc aggtaggcca
1501 ggcataggaa agacccatct ggccagggag ctagccaaga aggttgcgtc aacactgtca
1561 ggcgaccaaa ggattggact gatacccaga aatggcgtcg atcattggga cgcctacaaa
1621 ggagagcggg tggttctgtg ggatgactat ggcatgagca accctataca ggacgcactg
1681 aggctccaag aattggctga cacctgtcct ctgaccctaa attgtgacag aattgaaaac
1741 aaaggaaaag tgttcgacag tgacgccata atcataacga ccaaccttgc aaacccagca
1801 ccattggatt atgtcaactt tgaggcttgt tccagacgca tagacttctt ggtgtatgca
1861 gacgcacctg acatcgagaa ggctaagcgt gacttccctg gccaaccaga tatgtggaaa
1921 gaccattaca aaccagactt ctcacacatt aaacttcagc tcgcaccaca gggaggcttt
1981 gacaagagtg gcaacacccc acatggcaaa ggtgtggtta agtccctgac gattggttct
2041 ctgatcgcca gggcttctgg cttgctccat gagagaatgg atgaattcga gctccaaggc
2101 cccaacttac caaccttcaa tttcgaccgt aacaaagtcg ccgccttcag acaattggca
2161 gctgaaaaca aatacggtct tatggacaca atgagggtcg gcaaccaact gaaaagtgtc
2221 aaaaccatgg atgagctgaa gcaggctata aagaacatca ccatcaagaa gtgccagata
2281 gtgtacaatg gatgcaccta caccatggaa tctgatggga ggaacaaggt tgtggttgaa
2341 aaggtccaaa atgcaacagt ccaaaccaac aatgaacttg caggagcact ccaccacctg
2401 agatctgcaa gaataagata ttatgtcaaa tgtttccaag aagctattta ctctgtactc
2461 caaattgctg gtgcagcctt cgtcaccaca cgcatcgtga ggcgtatgaa catctcaaac
2521 ctctggtcga agccacccgt cgaagagggt gatgagcctg aagacaaagg ggggtgcccc
2581 aagcccaggg acgaagatga cctcactatt gactccaaag acattaaagc agaaggtaag
2641 aagggcaaga acaaatctgg ccggggcaag aaacacacag ctttctcatc caagggcctc
2701 agtgatgaag agtacgatga gtacaagaga atcagggagg agagaaatgg caagtactca
2761 atagaagagt acctccagga tagggataga tactatgaag agcttgccat tgctaaggcc
2821 actgaggaag acttctgtga agaggaggaa atcaaaattc gccagagaat cttccggccc
2881 accaggaagc agcggaaaga ggaaagagcc acgcttgggc tcgtcacagg atcggaaatc
2941 agaaagagga acccagatga ttttaagcca aaaggaaaat tgtgggctga tgacaacagg
3001 aatgtggact acaatgagag gatagatttt gaggctcccc caagtgtttg gtctaggata
3061 gtcaactttg gcacagggtg gggattctgg gtctccccaa gtctctttat aacttcaaca
3121 catgtcatac caaaaggaat cactgaggcc tttggagttc ccattaacca aatccaaatt
3181 cacaaatctg gagagttttg ccgcttgcgg tttccaaaac caatcaggcc agacgtgagt
3241 ggaatgatct tggaagaggg tgcccctgaa ggcactgttg tttccattct catcaagagg
3301 acgacagggg aactgatgcc tctcgcagtc agaatgggga ctcacgctac aatgaaaatc
3361 caaggcagaa cggtgggcgg tcaaatgggc atgcttctca ctggctcaaa cgccaaaagc
3421 atggacctag gtacaacacc aggtgactgt ggatgcccat acatatacaa aaggggcaat
3481 gacttcgtgg tcattggggt gcacactgca gcagcccgtg gaggtaacac ggtcatatgt
3541 gccacacagg ggagtgaagg cgaggccacc ctcgaaggag gtgacaacaa gggcacctat
3601 tgtggagccc ccatcttggg tcctggcaac gcaccaaaat tgagcacaaa aacaaaattc
3661 tggagatctt ctaacgcgcc gctcccacca ggcacctatg aaccagcata ccttggtgga
3721 aaagacccgc gtgtgaaggg aggcccatct ttacaacagg ttatgagaga ccaactcaaa
3781 ccttttacag agcccagagg gaagccacca aaaccaagtg tcctagaatc agcaaagaag
3841 accatcatta atgttctgga acaaaccatt gacccccctg aaaagtggtc atatgcccaa
3901 gcttgtgcat ccctcgacaa gacaacctcc agtggatacc cgcatcacgt ccggaagaat
3961 gactactgga gtggtgagtc cttcacgggg aaacttgcag accaggcctc aaaagcaaat
4021 ctcatgtacg aggaaggtaa gcacatgcaa ccagtttaca ctgcagcact caaagacgag
4081 ctcgtgaaaa ctgacaaaat ttatggcaag atcaagaaaa gactcctgtg gggctctgac
4141 ctatccacca tgattcgatg cgccagggca tttggtggcc tcatggacga gctcaaagca
4201 aattgtatca cactccctat cagagttggt atgaacatga atgaagatgg ccccataata
4261 tttgaaaagc actccaggta caggtaccac tatgatgctg attattcccg ctgggattcc
4321 acacaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag
4381 ccacagttgg cacaaatagt ggcagaggac ctgctatcac caagtgtggt tgatgtgggc
4441 gatttcaaaa ttactattaa tgaaggccta ccatctggcg tgccttgcac ttcacaatgg
4501 aattctattg cccactggtt actcacccta tgtgccctgt ctgaagtgac aggactaggc
4561 cctgacatca tacaagccaa ctccatgtac tctttctatg gtgatgatga gattgtgagc
4621 acagacataa aattagaccc agagaaattg actgcaaaac tcaaagaata tggtcttaaa
4681 cccacccggc ctgacaagac tgaggggcca ctggtaatta gtgaggacct gaatgggttg
4741 actttcctcc gccgaacagt cacccgcgat ccagcgggtt ggtttggaaa gttggaccaa
4801 aactccatcc tcagacagct gtactggaca aggggaccca accatgaaga ccccagtgag
4861 actatgatac cacacgcaca gagacctgtg cagctcatgg cattgctagg agaatcctcc
4921 ctgcatgggc cctcatttta cagcaaggtt agcaagctgg ttatatctga acttaaagag
4981 ggaggaatgg atttttatgt gcccagacaa gagtcaatgt tcaggtggat gaggttctca
5041 gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc
5101 gtcgaatgac gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaataa
5161 cgagaccctt cccctagaac cagttgcggg cgcagccata gccgcacccg tcactggcca
5221 aaataatata attgacccct ggattagaac aaactttgtg caagcaccaa atggagagtt
5281 cacagtgtca cccagaaact ctcctggaga aattttacta aacctagagt tgggccctga
5341 tctgaaccct tatttggctc atttgtcaag gatgtataat ggatatgctg gtggagttga
5401 agtccaggtt ctcctggcag ggaacgcgtt cactgccggg aagatcctct tcgccgctgt
5461 cccgccaaat tttccagtgg aattcttaag cccagcccag attacaatgc tcccacatat
5521 aatagtagat gttaggactc ttgaaccaat tatgatccca ttacctgatg ttaggaatac
5581 attcttccac tataataatc agcccaacag ccgcatgaga ttagtggcta tgctctacac
5641 cccccttaga tctaatagct caggtgatga tgctttcact gtttcttgca gggttttgac
5701 taggcctact cctgactttg agtttactta tctagtgcca ccctctgttg aatctaagac
5761 taaacccttt tctctaccca ttctaaccct ttctgagctc acaaattcga ggttcccggt
5821 ccccatcgat tcgcttttca ccgcccaaaa taatgtgttg caggtgcagt gtcaaaatgg
5881 caggtgcaca cttgacggtg agctacaagg cacaacccag ttgctcccat ctggcatctg
5941 tgcgttcagg ggacgggtga cagcagtatc tgacactcct gacaagtggc acatgcaact
6001 gcaaaacctt aatggcacaa catatgaccc aactgatgat gtgccagccc cactgggtac
6061 acctgacttt aagggcgtcg tgtttgggat ggcaagccaa agaaataacg acgatgccgg
6121 ctcaaccagg tcccatgagg tggtgatttc aacgaacagc cccaaatttg ttcctaaatt
6181 aggctctgtc aatttcaaaa ccaataccga tgatttccaa tggcagccaa caagattcac
6241 accagtgggc attaatgatg atggcgacca accattcaga caatgggaac taccaaatta
6301 ttctggggtg ctcaccttga atatgaacct tgccccccct gttgctccaa atttccctgg
6361 cgaacaatta ctattcttca gatcttctgt gccatgttca ggaggttaca accaaggtat
6421 tatagattgc cttcttcccc aagaatggat ccaacatttc taccaggaat cagcaccttc
6481 tcagtcagaa gtggccctaa tcaggtatgt caaccccgac acgggccgta cactgtttga
6541 ggcaaaattg cataggtcag gctatatcac tgtggctcat tctggagact atccccttgt
6601 tgttccggct aatggatact ttagatttga ctcttgggta aatcagtttt actcactcgc
6661 cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggagc tttcattgca
6721 ggattggcgg gtgacatgct cacgtcatcc gtgggctccc tggtgaacgc aggggcaaac
6781 gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc ttcctttcaa
6841 catgacaaag agatgctcca agcgcaggtg aacgcaacca agcagctgca gtctgaaatg
6901 atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga tgcagcgagg
6961 ggggccatcg gtgcacccat gacaaaggtg cttgactggt ctggcactcg atactgggct
7021 cccaattcca caaagacaac tggttattcg gggcaattca cctcttcacc tgtgcacatg
7081 cccagcccga gtatcccaca atcaaaaccc gcaaagccca agtctctagg ttcttcttct
7141 tcttctagta gtgtttacag tatgtctacc caattaactt ctctaacatc tggctcttct
7201 agtaatgctt cttctgcttc tacaaaattg acaaatttga gctccggctc ttctcaaaac
7261 agaacagcag agtgggtgaa ccaacagaga aatctcagcc ctttcatgag tggcgcactc
7321 aatatctcgc atgtcacgcc accttcaagt agggcctcca gttctgggac ggtctcaacc
7381 gtacccaagg aagttttgga ctcctggaca tctgcattca acacacgcag acagccgctc
7441 ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat aattggctat
7501 aatatgattt ctttaaaatt taaatttggc taatttgtat cttttaaaaa
//