Typing tool
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Typing tool
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Complete norovirus genomes
| PZ679178 | GII.17 | |
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| GII.P17 |
ORF1: 1..275
ORF2: 256..1872
ORF3: 1872..2651
LOCUS PZ679178 2722 bp RNA linear VRL 18-JUL-2026
DEFINITION Norovirus GII isolate Hu/GII.17[P17]/WI0288/2026/USA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION PZ679178
VERSION PZ679178.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2722)
AUTHORS Anhalt,K., Goodger,E., Griesser,R., Barclay,L., Montmayeur,A.M.,
Wall,H., Vinje,J. and Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2722
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/WI0288/2026/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: WI"
/collection_date="16-May-2026"
/note="genotype: GII.17[P17]"
gene <1..275
/gene="ORF1"
CDS <1..275
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YFW02032.1"
/translation="PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVIS
ELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..272
/gene="ORF1"
/product="RdRp"
gene 256..1872
/gene="ORF2"
CDS 256..1872
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YFW02033.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSYDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 1872..2651
/gene="ORF3"
CDS 1872..2651
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YFW02034.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNAPSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 ggcccaatca tgaagacccc agtgagacta tgataccaca cgcacagaga cctgtgcagc
61 tcatggcatt gctaggagaa tcctccctac atggaccctc attttacagc aaggttagca
121 aactggttat atctgaactt aaagagggag gaatggattt ttatgtgccc agacaagagt
181 caatgttcag gtggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg
241 ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct
301 gctggtctcg taccagaggg caataacgag acccttcccc tagagccagt tgcgggcgca
361 gccatagccg cacccgtcac tggccaaaat aatataattg acccctggat tagaacaaat
421 tttgtgcaag caccaaatgg agagttcaca gtgtcaccca gaaactctcc tggagaaatt
481 ttactaaacc tagagttggg ccctgatctg aacccttatt tggctcattt gtcaaggatg
541 tataatggat atgctggtgg agttgaagtc caggttctcc tggcagggaa cgcgttcact
601 gccgggaaga tcctcttcgc cgctgtcccg ccaaattttc cggtggaatt cttaagccca
661 gcccagatta caatgcttcc acatataata gtagatgtta ggactcttga accaattatg
721 atcccattac ctgatgttag gaatacattc ttccactata ataatcagcc caacagccgc
781 atgagattag tggctatgct ctacaccccc cttagatcta atggctcagg tgatgatgtt
841 ttcactgttt cttgcagggt tttgactagg cctactcctg attttgagtt cacttatcta
901 gtgccaccct ctgttgaatc taagactaaa cccttttctt tacccattct aaccctttct
961 gagctcacaa actcgaggtt cccggtcccc atcgattcgc ttttcaccgc ccaaaacaat
1021 gtgttgcagg tgcagtgtca aaatggcagg tgcacacttg acggtgagct acaaggcaca
1081 acccagttgc tcccatctgg catctgtgcg ttcaggggac gggtgacagc agaaactgac
1141 aatcctgaca agtggcacat gcaactgcaa aaccttaatg gcacaacata tgacccaact
1201 gatgatgtgc cagccccact gggcacacct gacttcaagg gcgtcgtgtt tgggatggca
1261 agccaaagaa atgtgggtaa cgacgcgccc ggctcaacca ggtcccatga ggcggtgatt
1321 tcaacctaca gccccagatt tgttcctaaa ttaggctctg tcaatttcaa aagctatgac
1381 gatgatttcc aattgcagcc aacaagattc acaccagtgg gcatcaatga tgatggcaac
1441 caaccattca gacaatggga actaccagac tactcagggg tgcttacctt gaatatgaac
1501 cttgcccccc ctgttgctcc aaatttccct ggcgaacaat tgctattctt caggtcttct
1561 gtgccatgtt caggaggtta caaccaaggt atcatagatt gccttatccc ccaagaatgg
1621 atccaacact tctaccagga atcagcacct tctcagtcag aagtggccct aatcaggtac
1681 gtcaaccccg acacgggtcg tacactgttt gaggcaaaat tgcataggtc aggctatatc
1741 actgtggctc attctggaga ctatcctctt gttgttccgg ctaatggata ctttagattt
1801 gattcttggg taaatcagtt ttactcactc gccccaatgg gaactgggaa tgggcgaagg
1861 agggctcagt aatggctgga gctttcattg caggattggc gggtgacatg ctcacgtcat
1921 ccgtgggctc cctggtgaac gcaggggcaa acgccatcaa ccaaaagata gactttgaaa
1981 acaacaaaca actacagtct gcttcctttc aacatgataa agagatgctc caagcgcagg
2041 tgaacgcaac caagcagctg caatctgaga tgatagccct aaaacagggg gttttggccg
2101 ctggcggctt ttcccccact gatgcagcga ggggggccat cggtgcaccc atgacaaagg
2161 tgcttgactg gtctggcact cgatactggg ctcccaattc cacaaagaca actggttatt
2221 cggggcaatt cacctcttca cctgtgcaca tgcccagccc gagtgtccca caatcaaaac
2281 ccgcaaagcc caagtctcta ggttcttctt cttcttctag tagtgtttac agtatgtcta
2341 cccaattaac ttctctaaca tctggctctt ctagtaatgc tccttctgct tctacaaagt
2401 tgacaaattt gagctccggc tcttctcaaa acagaacagc agagtgggtg aaccaacaga
2461 gaagtctcag ccctttcatg agtggcgcac tcaatatctc gcatgtcacg ccaccttcaa
2521 gtagggcctc cagttctggg acggtctcaa ccgtgcccaa ggaagttttg gactcctgga
2581 catctgcatt caacacacgc agacagccgc tcttcgcaca cctcagagtg aggggggagt
2641 cacgtgttta gtgaaaagaa ataattggct atgatatgat ttctttaaaa tttaaatttg
2701 gctaatttgt atcttttaaa aa
//