Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| PZ679171 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 1..275
ORF2: 256..1860
ORF3: 1860..2639
LOCUS PZ679171 2710 bp RNA linear VRL 18-JUL-2026
DEFINITION Norovirus GII isolate Hu/GII.17[P17]/WI0237/2026/USA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION PZ679171
VERSION PZ679171.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2710)
AUTHORS Anhalt,K., Goodger,E., Griesser,R., Barclay,L., Montmayeur,A.M.,
Wall,H., Vinje,J. and Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2710
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/WI0237/2026/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: WI"
/collection_date="14-Apr-2026"
/note="genotype: GII.17[P17]"
gene <1..275
/gene="ORF1"
CDS <1..275
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YFW02011.1"
/translation="PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVIS
ELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..272
/gene="ORF1"
/product="RdRp"
gene 256..1860
/gene="ORF2"
CDS 256..1860
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YFW02012.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRATAVTDDTYKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNDDASTRSHEVVISTYSPKFVPKLGSVNFKSKSDDFQLQPTRFTPVGINKDGDL
PFRQWELPNYSGALTLNMNLAPPVAPNFPGEQLLFFRSAVPCSGGYDEGIIDCLIPQE
WIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPANGY
FRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 1860..2639
/gene="ORF3"
CDS 1860..2639
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YFW02013.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 ggcccaatca tgaagacccc agtgagacta tgataccaca cgcacaaaga cctgtgcagc
61 tcatggcatt gctaggagaa tcctccctac atggaccctc attttacagc aaggttagca
121 agctggttat atctgaactt aaagagggag gaatggattt ttatgtgccc agacaagagt
181 caatgttcag gtggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg
241 ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct
301 gctggtctcg taccagaggg caataacgag acccttcccc tagaaccagt tgcgggcgca
361 gccatagccg cacccgtcac tggccaaaat aatataattg acccctggat tagaacaaac
421 tttgtgcaag caccaaatgg agagttcaca gtgtcaccca gaaactctcc tggagaaatt
481 ttactaaacc tagagttggg ccctgatctg aacccttatt tggctcattt gtcaaggatg
541 tataatggat atgctggtgg agttgaagtc caggttctcc tggcagggaa cgcgttcact
601 gccgggaaga tcctcttcgc cgctgtcccg ccaaattttc cggtggaatt cttaagccca
661 gcccagatta caatgctccc acatataata gtagatgtta ggactcttga accaattatg
721 atcccattac ctgatgttag gaatacattc ttccattata ataatcagcc caacagccgc
781 atgagattag tggctatgct ctacaccccc cttagatcta atggctcagg tgatgatgtt
841 ttcactgttt cttgcagggt tttgactagg cctacccctg atttcgagtt cacctatcta
901 gtgccaccct ctgttgaatc taagactaaa cccttttctt tacccattct aaccctttct
961 gagctcacaa attcgaggtt cccggtcccc attgactcgc ttttcaccgc ccaaaataat
1021 gtgttgcagg tgcagtgtca aaatggcagg tgcacacttg atggtgagct acaaggcaca
1081 acccagttgc tcccatctgg catctgtgcg ttcagggggc gggcgacagc ggtaactgat
1141 gatacttaca agtggcacat gcaactgcaa aaccttaatg gcacaacata tgacccaact
1201 gatgatgtgc cagccccact gggtacacct gacttcaagg gcgtcgtgtt tgggatggca
1261 agccaaagaa atgacgacgc gtcaaccagg tcccatgagg tggtaatttc aacctacagc
1321 cccaaatttg ttcctaaatt aggctctgtc aatttcaaaa gcaaaagcga cgatttccaa
1381 ttgcagccaa caagattcac accagtgggc attaataagg atggcgacct accattcaga
1441 caatgggaac taccaaatta ctcaggggcg ctcaccttga atatgaacct tgccccccct
1501 gttgccccaa atttccctgg tgaacaatta ctattcttca gatctgctgt gccatgttca
1561 ggaggttatg atgaaggtat tatagattgc cttatccccc aagaatggat tcaacatttc
1621 tatcaggaat cagcaccttc tcagtcagaa gtggccctaa tcaggtacgt caaccccgac
1681 acgggtcgta cactgtttga ggcaaaactg cataggtcag gctatatcac tgtggctcat
1741 tctggagact atcctcttgt tgttccggct aatggatact ttagatttga ctcttgggta
1801 aatcagtttt actcactcgc cccaatggga actgggaatg ggcgaaggag ggctcagtaa
1861 tggctggagc tttcattgca ggattggcgg gtgacatgct cacgtcatcc gtgggctccc
1921 tggtgaacgc aggggcaaac gccatcaacc aaaagataga ctttgaaaac aacaaacaac
1981 tccagtctgc ttcctttcaa catgataaag agatgctcca agcgcaggtg aacgcaacca
2041 agcagctgca atctgagatg atagccctaa aacagggggt tttggccgca ggcggctttt
2101 cccccactga tgcagcgagg ggggccatcg gtgcacccat gacaaaggtg cttgactggt
2161 ctggtactcg atactgggct cccaattcca caaagacaac tggttattcg gggcaattca
2221 cctcttcacc tgtgcacatg cccagcccga gtgtcccaca atcaaaaccc gcaaagccca
2281 agtctctagg ttcttcttct tcttctagta gtgtttatag catgtctacc caattaactt
2341 ctctaacatc tggctcttct agtaatgctt cttctgcttc tacaaaattg acaaatctga
2401 gctccggctc ttctcaaaac agaacagcag agtgggtgaa ccaacagaga agtctcagcc
2461 ctttcatgag tggcgcactc aacatctcgc atgtcacgcc accttcaagt agggcctcta
2521 gttctgggac ggtctcaacc gtgcccaaag aagttttgga ctcctggaca tctgcattca
2581 acacacgcag acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt
2641 gaaaagaaat aattggctat aatatgattt ctttaaaatt taaatttggc taatttgtat
2701 cttttaaaaa
//