Typing tool
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Typing tool
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Complete norovirus genomes
| PZ679165 | GII.17 | |
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| GII.P17 |
ORF1: 1..275
ORF2: 256..1872
ORF3: 1872..2651
LOCUS PZ679165 2722 bp RNA linear VRL 18-JUL-2026
DEFINITION Norovirus GII isolate Hu/GII.17[P17]/Statewide0206/2026/USA
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION PZ679165
VERSION PZ679165.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2722)
AUTHORS Anhalt,K., Goodger,E., Griesser,R., Barclay,L., Montmayeur,A.M.,
Wall,H., Vinje,J. and Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2722
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/Statewide0206/2026/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: WI"
/collection_date="27-Mar-2026"
/note="genotype: GII.17[P17]"
gene <1..275
/gene="ORF1"
CDS <1..275
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YFW01993.1"
/translation="PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVIS
ELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..272
/gene="ORF1"
/product="RdRp"
gene 256..1872
/gene="ORF2"
CDS 256..1872
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YFW01994.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 1872..2651
/gene="ORF3"
CDS 1872..2651
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YFW01995.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ggcctaatca tgaagacccc agtgagacta tgataccaca cgcacagaga cctgtgcagc
61 tcatggcatt gctaggagaa tcctccctac atggaccctc attttacagc aaggttagca
121 aactggttat atctgaactt aaagagggag gaatggattt ttatgtgccc agacaagagt
181 caatgttcag gtggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg
241 ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ccccatctaa tgatggtgct
301 gctggtctcg taccagaggg caataacgag acccttcccc tagaaccagt tgcgggcgca
361 gccatagccg cacccgtcac tggccaaaat aatataattg acccctggat tagaacaaat
421 tttgtgcaag caccaaatgg agagttcaca gtgtcaccca gaaactctcc tggagaaatt
481 ttactaaacc tagagttggg ccctgatctg aacccttatt tggctcattt gtcaaggatg
541 tataatggat atgctggtgg agttgaagtc caggttctcc tggcagggaa cgcgttcact
601 gccgggaaga tcctcttcgc cgctgtcccg ccaaattttc cggtggaatt cttgagccca
661 gcccagatta caatgctccc acatataata gtagatgtta ggactcttga accaattatg
721 atcccattac ctgatgttag gaatacattc ttccattata ataatcagcc caacagccgc
781 atgagattag tggctatgct ctacaccccc cttagatcta atggctcagg tgatgatgtt
841 ttcactgttt cttgcagggt tttgactagg cctacccctg attttgagtt cacttatcta
901 gtgccaccct ctgttgaatc taagactaaa cccttttctt tacccattct aaccctttct
961 gagctcacaa attcgaggtt cccggtcccc atcgattcgc ttttcaccgc ccaaaataat
1021 gttttgcagg tgcagtgtca aaatggcagg tgcacacttg acggtgagct acaaggcaca
1081 acccagttgc tcccatctgg catctgtgcg ttcagggggc gggtgacagc agaaactgac
1141 aatcctgaca agtggcacat gcaactgcaa aacctcaatg gcacaacata tgacccaact
1201 gatgatgtgc cagccccact gggtacacct gacttcaagg gcgtcgtgtt tgggatggca
1261 agccaaagaa atgtgggtaa cgacgcgccc ggctcaacca ggtcccatga ggcggtgatt
1321 tcaacctaca gccccagatt tgttcctaaa ttaggctctg tcaatttcaa aagcaatgat
1381 gatgatttcc aattgcagcc aacaagattc acaccagtgg gcattaatga tgatggcaac
1441 caaccattca gacaatggga attaccagat tattcaggag tgcttacctt gaatatgaac
1501 cttgcccccc ctgttgctcc aaatttccct ggcgaacaat tactattctt cagatcttct
1561 gtgccatgtt caggaggtta caaccaaggt attatagatt gccttatccc ccaagaatgg
1621 atccaacact tctaccagga atcagcacct tctcagtcag aagtggccct aatcaggtac
1681 gtcaaccccg acacgggtcg tacactgttt gaggcaaaat tgcataggtc aggctatatc
1741 actgtggctc attctggaga ctatcctctt gttgttccgg ctaatggata ctttagattt
1801 gactcttggg tgaatcagtt ttactcactc gccccaatgg gaactgggaa tgggcgaagg
1861 agggctcagt aatggctgga gctttcattg caggattggc gggtgacatg ctcacgtcat
1921 ccgtgggctc cctggtgaac gcaggggcaa acgccatcaa ccaaaagata gactttgaaa
1981 acaacaaaca actccagtct gcttcctttc aacatgataa agagatgctc caagcgcagg
2041 tgaacgcaac caagcagctg caatctgaga tgatagccct aaaacagggg gttttggccg
2101 caggcggctt ttcccccact gatgcagcga ggggggccat cggtgcaccc atgacaaagg
2161 tgcttgactg gtctggcact cgatactggg ctcccaattc cacaaagaca actggttatt
2221 cggggcaatt cacctcttca cctgtgcaca tgcccagccc gagtgtccca caatcaaaac
2281 ccgcaaagcc caagtctcta ggttcttctt cttcttctag tagtgtttac agtatgtcta
2341 cccaattaac ttctctaaca tctggctctt ctagtaatgc ttcttctgct tctacaaaat
2401 tgacaaattt gagctccggc tcttctcaaa acagaacagc agagtgggtg aaccaacaga
2461 gaagtctcag ccctttcatg agtggtgcac tcaatatctc gcatgtcacg ccaccttcaa
2521 gtagggcctc cagttctggg acggtctcaa ccgtgcccaa ggaagttttg gactcctgga
2581 catctgcatt caacacacac agacagccgc tcttcgcaca cctcagagtg aggggggagt
2641 cacgtgttta gtgaaaagaa ataattggct ataatatgat ttcttcaaaa tctaaatttg
2701 gctaatttgt atcttttaaa aa
//