Typing tool
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Typing tool
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Complete norovirus genomes
| PZ537755 | GI.2 | |
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| GI.P2 |
ORF1: 1..270
ORF2: 254..1894
ORF3: 1894..2529
LOCUS PZ537755 2529 bp RNA linear VRL 21-JUN-2026
DEFINITION Norovirus GI isolate Hu/GI.2[P2]/OR0015/2026/USA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION PZ537755
VERSION PZ537755.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2529)
AUTHORS Tsaknaridis,L.J., Montmayeur,A.M., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2529
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="Hu/GI.2[P2]/OR0015/2026/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/geo_loc_name="USA: OR"
/collection_date="20-Mar-2026"
/note="genotype: GI.2[P2]"
gene <1..270
/gene="ORF1"
CDS <1..270
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YFG92638.1"
/translation="PNHSDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKISSKVIQ
EIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
mat_peptide <1..267
/gene="ORF1"
/product="RdRp"
gene 254..1894
/gene="ORF2"
CDS 254..1894
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YFG92639.1"
/translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA
TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM
PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGSSDSFVVAGRVLTAPSSDFSFL
FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ
LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR
ISKTPNNTSSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST
PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC
LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ
QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI"
gene 1894..2529
/gene="ORF3"
CDS 1894..2529
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YFG92640.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN
TFEHDKDMLSYQVQASNALLAKNLNTRYSMLVAGGLSSADASRAVAGAPVTQLIDWNG
TRVAAPRSSATTLRSGGFMAVPMPVQPKSKALQPSGFSNPAYNTSTVSSRTSSWVQSQ
NSLRSVSPFHRQALQTVWVTPPGSTSSSSVSSTPYGVFNTDRMPLFANLRR"
ORIGIN
1 cccaaccatt cagatccttt tgagacccta gtgccacacc aacaaaggaa ggtccaatta
61 atatcattat tgggtgaggc ctcactgcat ggtgaaaagt tctacagaaa gatttcaagt
121 aaagtcatcc aggaaatcaa aacagggggc cttgaaatgt atgtgccagg atggcaagcc
181 atgttccgtt ggatgcggtt ccatgacctt ggcttgtgga caggagatcg caatctcctg
241 cccgaatttg taaatgatga tggcgtctaa ggacgcccct caaagcgctg atggcgcaag
301 cggtgcaggt caactggtgc cggaggttaa tacagctgat cccttaccca tggaacccgt
361 ggctgggcca acaacagccg tagccactgc tgggcaagtt aatatgatcg atccctggat
421 tgttaataat tttgtccagt cacctcaagg tgagttcaca atctctccta acaatacccc
481 cggtgatatt ttgtttgatt tacaattagg tccacatcta aaccctttct tgtcacattt
541 gtcccaaatg tataatggct gggttgggaa tatgagagtt agaattctcc ttgctgggaa
601 tgcattctca gctggaaaga ttatagtttg ttgtgtcccc cctggcttta catcttcttc
661 tctcaccata gctcaggcta cattgtttcc ccatgtaatt gctgatgtga gaacccttga
721 gccaatagaa atgcccctcg aggatgtgcg taatgtcctc tatcatacca atgataatca
781 accaacaatg cggctggtgt gtatgttata cacgccgctc cgcactggtg gggggtctgg
841 tagttctgat tcctttgtag tcgctggcag ggttctcaca gcccctagca gcgacttcag
901 tttcttgttt cttgtcccgc ctaccataga gcagaagact cgggctttca ctgtgcctaa
961 tatccccttg caaaccttgt ccaattctag gtttccttcc ctcatccagg ggatgattct
1021 gtcccccgat gcatctcaag tggtccaatt ccaaaatggg cgttgcctta tagatggtca
1081 actcttaggc actacacccg ctacatcagg acagctgttc agagtaagag gaaagataaa
1141 tcagggagcc cgcacactca acctcacaga ggtggatggt aagccattca tggcatttga
1201 ttcccctgca cctgtggggt tccccgattt tggaaaatgt gactggcaca tgagaatcag
1261 caaaacccca aacaacacaa gttcaggtga ccctatgcgc agtgtcagcg tgcaaaccaa
1321 cgtgcagggt tttgtgccac acctgggaag tatacaattt gatgaagtgt ttaaccatcc
1381 cacaggtgac tacattggca ccattgaatg gatttcccag ccatctacac cccctggaac
1441 agacattaat ttgtgggaga tccccgacta tgggtcgtcc ctttcccaag cagctaacct
1501 ggccccccca gtattccccc ctggatttgg tgaggccctt gtatactttg tttctgcttt
1561 cccgggcccc aataaccgct cagccccgaa tgatgtaccc tgtcttctcc ctcaagagta
1621 cataacccac tttgtcagcg aacaagcccc aacgatgggt gacgcagctt tactgcatta
1681 tgtcgaccct gataccaaca ggaaccttgg ggagttcaag ctataccctg gaggttacct
1741 cacctgtgta ccaaacgggg taggtgccgg gcctcaacag ctccctctca atggtgtttt
1801 tctctttgtt tcttgggtgt ctcgttttta tcagcttaag cctgtgggaa cagccagtac
1861 ggcaagaggt aggcttggag tgcgccgtat ataatggccc aagccatcat aggagcaatt
1921 gccgcgtcag ctgcaggctc agcattgggt gcaggcatcc aggctggtgc cgaggctgcg
1981 cttcagagtc aaagatacca acaagattta gccctgcaaa ggaatacttt tgaacatgac
2041 aaggacatgc tttcctacca ggtccaggca agtaatgcac ttttggcaaa gaatctcaat
2101 acccgctatt ctatgcttgt tgcagggggc ctttctagtg ctgatgcttc tcgggctgtt
2161 gctggggccc ctgtaacaca attgattgat tggaacggca ctcgggttgc cgcccccaga
2221 tcaagtgcaa caactctgag gtctggtggt ttcatggcag tccccatgcc tgttcaaccc
2281 aaatctaagg cactgcaacc ctctgggttt tctaatcctg cttataacac gtccacagtt
2341 tcttctagga cttcttcttg ggtgcagtca cagaattccc tgcgaagtgt gtcacccttt
2401 cataggcagg ctcttcaaac tgtgtgggtt actccacctg ggtccacttc ctcttcttct
2461 gtttcctcaa caccttatgg tgtttttaat acggatagga tgccgctatt cgcaaatttg
2521 cggcgttaa
//